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The map label for this gene is yggS [C]

Identifier: 159898076

GI number: 159898076

Start: 1803598

End: 1804344

Strand: Direct

Name: yggS [C]

Synonym: Haur_1552

Alternate gene names: 159898076

Gene position: 1803598-1804344 (Clockwise)

Preceding gene: 159898075

Following gene: 159898077

Centisome position: 28.42

GC content: 52.61

Gene sequence:

>747_bases
ATGCCGTTTGATCATGCCCGATTGTTGGAACAGGTCGCTCAGATTCAGCAGCGAATCAGCCAAGCCGCCCAGCGTAGCCA
CCGTGATCCAGCCAGCGTGCGCTTGATTGCGGTCACCAAAACCCATCCCATGCTGCGGATCAATGCGGTCTTGGCGGCAG
GCATTCACGATCTTGGTGAAAATCGGGTGCAAGAAGCCGAAGAAAAAATTGCTCTGCAAACGCCCGAAGCACTGGCCCAA
ACCCGTTGGCATTTAATCGGCCACTTGCAACGCAATAAAGCTCGCCGTGCTGCCAAACTTTTTTCATTAATTCACTCGAT
CGATAGCGTTAAATTGGCCGAAATTCTCAACCGAATTGTTGATGAAGAAGCCAGCGTAATTCCGCAACCCTTGCCAATTT
TGCTGCAAGTCAATGTTTCCGGTGAGCGCTCTAAAGATGGGTTTGAGCTAGCTGGTGGCGTGCACAACTCTGCATGGCTC
GATTTTGTAGGCGAAGTGCGGGCAATTGCTGAGTTGCCATTGATCGATTTACGTGGTTTGATGACGATTGCGCCCTATTC
TGATGATGTTGAGGGTGTGGTGCGCCCATGCTTTCGGGCCTTGCGCGAGGTACGCGACCAGCTTGAACAGCGGCTTGATC
GTCCGTTGTCAGAGCTTTCGATGGGCATGAGCGGCGATTTTGAGGTTGCAATCGAAGAAGGCTCAACGATTGTGCGGGTT
GGCACGGCACTGTTTGGCGCTCGCTAA

Upstream 100 bases:

>100_bases
ATGTGTACTGCTTGTCATCATGATCGTTTCTTCTCTCATCGCCATGAACGAGGAGCCACTGGTCGATTCGCCGCTGTGAT
TGGTCTACGCGAGGTACACC

Downstream 100 bases:

>100_bases
ATAACGCCGTACTACGAGCTATGCTAAAATTAGGATATTGTAATACGATTGATTGTTTGAGCGGTTGCTCCTAGTTGTCG
AGATGGTTATGCGTTCGATC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MPFDHARLLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGENRVQEAEEKIALQTPEALAQ
TRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIVDEEASVIPQPLPILLQVNVSGERSKDGFELAGGVHNSAWL
DFVGEVRAIAELPLIDLRGLMTIAPYSDDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRV
GTALFGAR

Sequences:

>Translated_248_residues
MPFDHARLLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGENRVQEAEEKIALQTPEALAQ
TRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIVDEEASVIPQPLPILLQVNVSGERSKDGFELAGGVHNSAWL
DFVGEVRAIAELPLIDLRGLMTIAPYSDDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRV
GTALFGAR
>Mature_247_residues
PFDHARLLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGENRVQEAEEKIALQTPEALAQT
RWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIVDEEASVIPQPLPILLQVNVSGERSKDGFELAGGVHNSAWLD
FVGEVRAIAELPLIDLRGLMTIAPYSDDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRVG
TALFGAR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=244, Percent_Identity=36.4754098360656, Blast_Score=134, Evalue=1e-31,
Organism=Escherichia coli, GI1789321, Length=241, Percent_Identity=40.6639004149378, Blast_Score=144, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17533025, Length=238, Percent_Identity=34.0336134453782, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=250, Percent_Identity=33.6, Blast_Score=108, Evalue=9e-25,
Organism=Drosophila melanogaster, GI45550861, Length=221, Percent_Identity=38.0090497737557, Blast_Score=122, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 27517; Mature: 27386

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFDHARLLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
NRVQEAEEKIALQTPEALAQTRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
DEEASVIPQPLPILLQVNVSGERSKDGFELAGGVHNSAWLDFVGEVRAIAELPLIDLRGL
CCHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCC
MTIAPYSDDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCEEEEE
GTALFGAR
HHHHHCCC
>Mature Secondary Structure 
PFDHARLLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
NRVQEAEEKIALQTPEALAQTRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
DEEASVIPQPLPILLQVNVSGERSKDGFELAGGVHNSAWLDFVGEVRAIAELPLIDLRGL
CCHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCC
MTIAPYSDDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCEEEEE
GTALFGAR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]