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The map label for this gene is ydcM [C]

Identifier: 159898064

GI number: 159898064

Start: 1796278

End: 1796949

Strand: Direct

Name: ydcM [C]

Synonym: Haur_1540

Alternate gene names: 159898064

Gene position: 1796278-1796949 (Clockwise)

Preceding gene: 159898063

Following gene: 159898065

Centisome position: 28.3

GC content: 52.23

Gene sequence:

>672_bases
GTGGTGCTTGTCTGCCATATTAACCGCCCTGATGTTGAACTACCGACTAATCAGTCTGTGGGCATTGATGTCGGGCTTGA
ATCCTTTACCACCCTGTCAACAGGCGAGAAAACCGAACCACCGAAGTTCTACCGCCGCAGCCAGAAGAAACTTGCCCGCG
CTCAGCGCAAGCTCTCACGCGCTCGAAAGGGCAGTAAAAACCGATTAAAAGCACGCAAGCGCGTTGCCAACGTCCATCAA
AAAATCCGTAACCAACGCGCCGATTGGCTTCACAAGCATGCGTTGGGGATTGTTCAACGATTCGACATGGTGTGCATCGA
AGATCTGAATGTCAAAGGTCTCGCGAGAACCAAACTGGCCAAATCATTCAGTGATGCTGCCCTGAGTACCTTCATGCAAC
GATTACAGGAAAAAGCAGAATGGTATGGACGACGGGTGATTAAGGTGGGACGTTTCTACGCCTCATCAAAGACCTGCCAT
TACTGCCAAACCAAAACCTCCTTGACGCTGGCGGATCGGGTGTGGACATGTCACACCTGTGGCATGACTCATGATCGCGA
TATCAACGCCGCGATCAACATCGTGCATGAAGGGCTACGCCTGCTTGCCGTTGGGACGACGGAAAGCCAAAACGCTGCTC
GAGATGGTGTAAACCCAGCGAAACGCTGGTAG

Upstream 100 bases:

>100_bases
TCAGCGTACCAAAAATCGGGCTGATGCGAGCGGTGATTCATCGACCACTGCTGGGGATAGCGAAGGGTGCAACGATTAAG
CAAGATCCAACAGGCGCATG

Downstream 100 bases:

>100_bases
CTGTCGTTGAAGGCAGAAGCCACGCCCCTCGTGGGCGTGGTAGTTCACACTACGGGACGAGTGAGCAAATTGAAGCCCAA
CGTCCCCGCTCGATGCCTGT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MVLVCHINRPDVELPTNQSVGIDVGLESFTTLSTGEKTEPPKFYRRSQKKLARAQRKLSRARKGSKNRLKARKRVANVHQ
KIRNQRADWLHKHALGIVQRFDMVCIEDLNVKGLARTKLAKSFSDAALSTFMQRLQEKAEWYGRRVIKVGRFYASSKTCH
YCQTKTSLTLADRVWTCHTCGMTHDRDINAAINIVHEGLRLLAVGTTESQNAARDGVNPAKRW

Sequences:

>Translated_223_residues
MVLVCHINRPDVELPTNQSVGIDVGLESFTTLSTGEKTEPPKFYRRSQKKLARAQRKLSRARKGSKNRLKARKRVANVHQ
KIRNQRADWLHKHALGIVQRFDMVCIEDLNVKGLARTKLAKSFSDAALSTFMQRLQEKAEWYGRRVIKVGRFYASSKTCH
YCQTKTSLTLADRVWTCHTCGMTHDRDINAAINIVHEGLRLLAVGTTESQNAARDGVNPAKRW
>Mature_223_residues
MVLVCHINRPDVELPTNQSVGIDVGLESFTTLSTGEKTEPPKFYRRSQKKLARAQRKLSRARKGSKNRLKARKRVANVHQ
KIRNQRADWLHKHALGIVQRFDMVCIEDLNVKGLARTKLAKSFSDAALSTFMQRLQEKAEWYGRRVIKVGRFYASSKTCH
YCQTKTSLTLADRVWTCHTCGMTHDRDINAAINIVHEGLRLLAVGTTESQNAARDGVNPAKRW

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=208, Percent_Identity=33.6538461538462, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 25399; Mature: 25399

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLVCHINRPDVELPTNQSVGIDVGLESFTTLSTGEKTEPPKFYRRSQKKLARAQRKLSR
CEEEEECCCCCCCCCCCCCCCEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ARKGSKNRLKARKRVANVHQKIRNQRADWLHKHALGIVQRFDMVCIEDLNVKGLARTKLA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KSFSDAALSTFMQRLQEKAEWYGRRVIKVGRFYASSKTCHYCQTKTSLTLADRVWTCHTC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHHHEEHEEC
GMTHDRDINAAINIVHEGLRLLAVGTTESQNAARDGVNPAKRW
CCCCCCCHHHHHHHHHHCHHEEEECCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MVLVCHINRPDVELPTNQSVGIDVGLESFTTLSTGEKTEPPKFYRRSQKKLARAQRKLSR
CEEEEECCCCCCCCCCCCCCCEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ARKGSKNRLKARKRVANVHQKIRNQRADWLHKHALGIVQRFDMVCIEDLNVKGLARTKLA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KSFSDAALSTFMQRLQEKAEWYGRRVIKVGRFYASSKTCHYCQTKTSLTLADRVWTCHTC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHHHEEHEEC
GMTHDRDINAAINIVHEGLRLLAVGTTESQNAARDGVNPAKRW
CCCCCCCHHHHHHHHHHCHHEEEECCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]