| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897861
Identifier: 159897861
GI number: 159897861
Start: 1546936
End: 1547901
Strand: Reverse
Name: 159897861
Synonym: Haur_1335
Alternate gene names: NA
Gene position: 1547901-1546936 (Counterclockwise)
Preceding gene: 159897870
Following gene: 159897860
Centisome position: 24.39
GC content: 50.52
Gene sequence:
>966_bases ATGCCAGTTTGCACGCGCTGCCACCAAGATACTGGTCTTATGGGTGCTTTACGCTTCAATCGTCAAACCAATCGCTGCGG CCCCTGCGACGGCGTTGTCCAACAACAACTCCAGCGCTTTCGCCAGGCGTTTCTGCAATTTTGTAATGATGGGCTTTTAT CGCCACAAGAATGGACGATCCTTATTCAAGGCTCGCAGCAAGAAGGCTTGAGCTGGGATGAGGCGCTGAACTATATTCGT GGTGATGCACTGAACTTCCTTGAACGCACACTGGCTTTTGCATCGACCGATGGCGTAATTACGAATGAAGAAGCCGCCCA TATTCAGCAACTCCAACAGGCCTTTCGCATCCCCGATCATCAAGCCCAACCGCTGCTCCAGCGCCTCAAATACTTGCAAA CCATTAGTAATGTGCGCCAAGGTCATCTGCCAACGATTCAACCAACCGTTCGGCTCGATGCTGGCGAAATCTGCCATCTC GAAACTGATGCCCGCTATCATAAAGTCACCGCCAAAGGCACTACCTTGCAACCTGGGCGTTTTGTGGCTACCAATAAGAA ACTGCATTTTCTTTCCCAAGCGGGTGGAAGCAGCATCGACTGGAAGAAGGTCATGCGGATTAACGCTGAGGCAGGCAGCA TCTACTTAGAACTATCGGTTAAAAGTGGGAATGGTCGCTATAGCGTGGCAGATCCAACCATGGCTGAAGCAGTATTTGAT GTGTTAGTGCGTATGGCCAAACGAGAGTTTATTGCACCCCAAACTGGACAAGAAAGCCGCTATATTCCCCAAGATGTAAA ACTGGCAGTGTGGCAACGTGATCAGGGCAAGTGTACCCAGTGTGGCGATGCCTCTTATCTTGAGTTTGATCATATCATTC CGCACAGCAAGGGCGGAGCAAACACCGTCGGCAATGTGCAGCTGCTTTGTCGGAAATGTAATCTGGCGAAGGGTGATCGG ATTTAG
Upstream 100 bases:
>100_bases TTGACAGCGGCGAGCATGATCGCTAGAGTAGCTGTAGCCTCATGTGGATATAGCTATACCTAACCTCAGAGTATTTTGGA TTTCTAGGAGTGAGACGATC
Downstream 100 bases:
>100_bases TTAATTATTCTTGGACTGTTGACCGACAACATATAACCCAAGTGTGCTTAAAATATGAGAGGAAGGGTTATTTCAGATTT TTTCTAGCAGATTAATATTT
Product: HNH endonuclease
Products: NA
Alternate protein names: Restriction Endonuclease; HNH Endonuclease Domain-Containing Protein; TerF-Related Protein; Tellurium Resistance Protein TerE; HNH Nuclease; Stress Protein
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MPVCTRCHQDTGLMGALRFNRQTNRCGPCDGVVQQQLQRFRQAFLQFCNDGLLSPQEWTILIQGSQQEGLSWDEALNYIR GDALNFLERTLAFASTDGVITNEEAAHIQQLQQAFRIPDHQAQPLLQRLKYLQTISNVRQGHLPTIQPTVRLDAGEICHL ETDARYHKVTAKGTTLQPGRFVATNKKLHFLSQAGGSSIDWKKVMRINAEAGSIYLELSVKSGNGRYSVADPTMAEAVFD VLVRMAKREFIAPQTGQESRYIPQDVKLAVWQRDQGKCTQCGDASYLEFDHIIPHSKGGANTVGNVQLLCRKCNLAKGDR I
Sequences:
>Translated_321_residues MPVCTRCHQDTGLMGALRFNRQTNRCGPCDGVVQQQLQRFRQAFLQFCNDGLLSPQEWTILIQGSQQEGLSWDEALNYIR GDALNFLERTLAFASTDGVITNEEAAHIQQLQQAFRIPDHQAQPLLQRLKYLQTISNVRQGHLPTIQPTVRLDAGEICHL ETDARYHKVTAKGTTLQPGRFVATNKKLHFLSQAGGSSIDWKKVMRINAEAGSIYLELSVKSGNGRYSVADPTMAEAVFD VLVRMAKREFIAPQTGQESRYIPQDVKLAVWQRDQGKCTQCGDASYLEFDHIIPHSKGGANTVGNVQLLCRKCNLAKGDR I >Mature_320_residues PVCTRCHQDTGLMGALRFNRQTNRCGPCDGVVQQQLQRFRQAFLQFCNDGLLSPQEWTILIQGSQQEGLSWDEALNYIRG DALNFLERTLAFASTDGVITNEEAAHIQQLQQAFRIPDHQAQPLLQRLKYLQTISNVRQGHLPTIQPTVRLDAGEICHLE TDARYHKVTAKGTTLQPGRFVATNKKLHFLSQAGGSSIDWKKVMRINAEAGSIYLELSVKSGNGRYSVADPTMAEAVFDV LVRMAKREFIAPQTGQESRYIPQDVKLAVWQRDQGKCTQCGDASYLEFDHIIPHSKGGANTVGNVQLLCRKCNLAKGDRI
Specific function: Unknown
COG id: COG1403
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35926; Mature: 35795
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVCTRCHQDTGLMGALRFNRQTNRCGPCDGVVQQQLQRFRQAFLQFCNDGLLSPQEWTI CCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE LIQGSQQEGLSWDEALNYIRGDALNFLERTLAFASTDGVITNEEAAHIQQLQQAFRIPDH EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCC QAQPLLQRLKYLQTISNVRQGHLPTIQPTVRLDAGEICHLETDARYHKVTAKGTTLQPGR CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCEECCCE FVATNKKLHFLSQAGGSSIDWKKVMRINAEAGSIYLELSVKSGNGRYSVADPTMAEAVFD EEECCCCEEEHHHCCCCCCCHHHHEEEECCCCEEEEEEEEECCCCEEEECCCHHHHHHHH VLVRMAKREFIAPQTGQESRYIPQDVKLAVWQRDQGKCTQCGDASYLEFDHIIPHSKGGA HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHCCCCCCCCC NTVGNVQLLCRKCNLAKGDRI CCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure PVCTRCHQDTGLMGALRFNRQTNRCGPCDGVVQQQLQRFRQAFLQFCNDGLLSPQEWTI CCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE LIQGSQQEGLSWDEALNYIRGDALNFLERTLAFASTDGVITNEEAAHIQQLQQAFRIPDH EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCC QAQPLLQRLKYLQTISNVRQGHLPTIQPTVRLDAGEICHLETDARYHKVTAKGTTLQPGR CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCEECCCE FVATNKKLHFLSQAGGSSIDWKKVMRINAEAGSIYLELSVKSGNGRYSVADPTMAEAVFD EEECCCCEEEHHHCCCCCCCHHHHEEEECCCCEEEEEEEEECCCCEEEECCCHHHHHHHH VLVRMAKREFIAPQTGQESRYIPQDVKLAVWQRDQGKCTQCGDASYLEFDHIIPHSKGGA HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHCCCCCCCCC NTVGNVQLLCRKCNLAKGDRI CCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA