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The map label for this gene is yisV [H]

Identifier: 159897769

GI number: 159897769

Start: 1444386

End: 1445822

Strand: Reverse

Name: yisV [H]

Synonym: Haur_1240

Alternate gene names: 159897769

Gene position: 1445822-1444386 (Counterclockwise)

Preceding gene: 159897770

Following gene: 159897768

Centisome position: 22.78

GC content: 49.9

Gene sequence:

>1437_bases
ATGCTGGCAATTCCGCTCAACCCCAACTTAACTCGCCCGTTGTATTTGCAAATTGCCGACCATATTACGGCGTTGGCGCG
GGCTGGTCAGTTGCAAGCCGATCAACGCCTGCCATCATCGCGTCAATTGGCCGAGCAACTAAATCTGCATCGTTCAACAG
TGGTTACTGCATTCGATGAACTCCGAGCACGCGGCATCATTCAAACGCTGCACGGCAGCGGCAGTTATATTTGCTCAGGT
CTGTTTGATCAAGCACTCCAAGCACCCAAACCACAAGCATTAACCACACCTGTGCTGGCCAACGATCAGCTAATTGCTGA
GTTGTGGCGTTTAAATCATGCCGAGGGGATGATTTCGCTGGCCTTGGGTGTGCCCGCTCCAGATATGTTTCCGAGCCAAC
GCTTCGGCCAATTGCAACAGCGGATCGCCCGCCGCAACCCGCAAACTGCTTGGAATTACACTCATCCCCAAGGCTTTTAT
CCATTACGTCAAGCGATTGCCAATGATCTCGCCCGCCATGGCATTCAAACTAGTGCTGAACAATTGATTATCACCAACGG
CGCGAACGAAGCGATTAATTTGGTAACTCAAGCGCTGGCAGTAACAGGCGATAGCGGTTTGATCGAAGAACCCTCGTTTC
ATACAACGTTGCTTAATTTGCAACAAGCGGGCATTCGGCTCAATGGCTTTGCAGTTACCCATAATGGGCCAGATTGGGCA
AGTTTAAATGCGGCTTTACGCACGGGCTCAAGCCATCCACGCTTTATTTTAGTTGTGCCCGATTATCATAATCCAACAGG
CATGCGCTGGGCCAGCGACCAACGCTATCAATTGTTAAATTGGGCCAATCAGCAGGCCATTCCAATCATTGAAGATGCCA
CCTATAGCGATTTAGGTCTAACTGGCCCAAGTCAGCCAGCCCTGCGGGCCTTTGATCCGAATGTGATTTACATTGGCTCA
TATTCTAAATCGTTGATGCCTGGCCTACGCATTGGCTTTATTGTCGCTAATGGTCTGCTTCAGCAACAACTTGTCAGCTT
GAAAACCATTACCAGCGGTAGCAACGAATCGTTTAGCCAACAAATTCTGGCCGAATATCTGCATGCTGGCGAATATCACG
AACAATTGGCATGGGTTACCAGCATCTACCAACAACGCCGCGATGCCCTGCTTGAGGCAATTCAATGCTATTTACCAACC
GAAGTTCATGCGACAATCGCCGATGGTGGGTTTTATAGCTGGCTGCATTTGCCAGCCGATCAGTCGATCATGCGCTTGTT
TCAACGCGCCTTACAGCGTGGCATAGTGATTTTTCCGGGCCAAGCTTTTTACCTTAATCAGGCCAATCAAACGCATAATG
CTATTCGACTGTGTTTTGCCCGTTACCCTGAGGACGTATTGACCCACGCCGTGCGGTTGCTCGGCAGTTGCTTTTAA

Upstream 100 bases:

>100_bases
TGCCAATCTGTGGCCAAAACAACCTTCGCGTTCTTCGCGTCCTTCGTGGTTCCGTCCTTCGTGAACTTCGTGAACTTCGT
GGATCAAAAAAGGATTTTGA

Downstream 100 bases:

>100_bases
TAGCCCGATTCCTAATCCAATATAGGCTGATTCGAGACCCCTAGCAACTGCGCACTCATTAGTTGACAACTACCCCGCTA
TCATCCACAATGCAGCGACT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MLAIPLNPNLTRPLYLQIADHITALARAGQLQADQRLPSSRQLAEQLNLHRSTVVTAFDELRARGIIQTLHGSGSYICSG
LFDQALQAPKPQALTTPVLANDQLIAELWRLNHAEGMISLALGVPAPDMFPSQRFGQLQQRIARRNPQTAWNYTHPQGFY
PLRQAIANDLARHGIQTSAEQLIITNGANEAINLVTQALAVTGDSGLIEEPSFHTTLLNLQQAGIRLNGFAVTHNGPDWA
SLNAALRTGSSHPRFILVVPDYHNPTGMRWASDQRYQLLNWANQQAIPIIEDATYSDLGLTGPSQPALRAFDPNVIYIGS
YSKSLMPGLRIGFIVANGLLQQQLVSLKTITSGSNESFSQQILAEYLHAGEYHEQLAWVTSIYQQRRDALLEAIQCYLPT
EVHATIADGGFYSWLHLPADQSIMRLFQRALQRGIVIFPGQAFYLNQANQTHNAIRLCFARYPEDVLTHAVRLLGSCF

Sequences:

>Translated_478_residues
MLAIPLNPNLTRPLYLQIADHITALARAGQLQADQRLPSSRQLAEQLNLHRSTVVTAFDELRARGIIQTLHGSGSYICSG
LFDQALQAPKPQALTTPVLANDQLIAELWRLNHAEGMISLALGVPAPDMFPSQRFGQLQQRIARRNPQTAWNYTHPQGFY
PLRQAIANDLARHGIQTSAEQLIITNGANEAINLVTQALAVTGDSGLIEEPSFHTTLLNLQQAGIRLNGFAVTHNGPDWA
SLNAALRTGSSHPRFILVVPDYHNPTGMRWASDQRYQLLNWANQQAIPIIEDATYSDLGLTGPSQPALRAFDPNVIYIGS
YSKSLMPGLRIGFIVANGLLQQQLVSLKTITSGSNESFSQQILAEYLHAGEYHEQLAWVTSIYQQRRDALLEAIQCYLPT
EVHATIADGGFYSWLHLPADQSIMRLFQRALQRGIVIFPGQAFYLNQANQTHNAIRLCFARYPEDVLTHAVRLLGSCF
>Mature_478_residues
MLAIPLNPNLTRPLYLQIADHITALARAGQLQADQRLPSSRQLAEQLNLHRSTVVTAFDELRARGIIQTLHGSGSYICSG
LFDQALQAPKPQALTTPVLANDQLIAELWRLNHAEGMISLALGVPAPDMFPSQRFGQLQQRIARRNPQTAWNYTHPQGFY
PLRQAIANDLARHGIQTSAEQLIITNGANEAINLVTQALAVTGDSGLIEEPSFHTTLLNLQQAGIRLNGFAVTHNGPDWA
SLNAALRTGSSHPRFILVVPDYHNPTGMRWASDQRYQLLNWANQQAIPIIEDATYSDLGLTGPSQPALRAFDPNVIYIGS
YSKSLMPGLRIGFIVANGLLQQQLVSLKTITSGSNESFSQQILAEYLHAGEYHEQLAWVTSIYQQRRDALLEAIQCYLPT
EVHATIADGGFYSWLHLPADQSIMRLFQRALQRGIVIFPGQAFYLNQANQTHNAIRLCFARYPEDVLTHAVRLLGSCF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=363, Percent_Identity=25.068870523416, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI33469970, Length=363, Percent_Identity=25.068870523416, Blast_Score=112, Evalue=1e-24,
Organism=Escherichia coli, GI1787710, Length=437, Percent_Identity=28.8329519450801, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1790797, Length=473, Percent_Identity=24.7357293868922, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1786816, Length=379, Percent_Identity=25.5936675461741, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI48994949, Length=343, Percent_Identity=23.6151603498542, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6321000, Length=286, Percent_Identity=23.4265734265734, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356535, Length=386, Percent_Identity=20.2072538860104, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52977; Mature: 52977

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAIPLNPNLTRPLYLQIADHITALARAGQLQADQRLPSSRQLAEQLNLHRSTVVTAFDE
CEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LRARGIIQTLHGSGSYICSGLFDQALQAPKPQALTTPVLANDQLIAELWRLNHAEGMISL
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
ALGVPAPDMFPSQRFGQLQQRIARRNPQTAWNYTHPQGFYPLRQAIANDLARHGIQTSAE
EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
QLIITNGANEAINLVTQALAVTGDSGLIEEPSFHTTLLNLQQAGIRLNGFAVTHNGPDWA
EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCHH
SLNAALRTGSSHPRFILVVPDYHNPTGMRWASDQRYQLLNWANQQAIPIIEDATYSDLGL
HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC
TGPSQPALRAFDPNVIYIGSYSKSLMPGLRIGFIVANGLLQQQLVSLKTITSGSNESFSQ
CCCCCCCCEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
QILAEYLHAGEYHEQLAWVTSIYQQRRDALLEAIQCYLPTEVHATIADGGFYSWLHLPAD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
QSIMRLFQRALQRGIVIFPGQAFYLNQANQTHNAIRLCFARYPEDVLTHAVRLLGSCF
HHHHHHHHHHHHCCEEEECCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAIPLNPNLTRPLYLQIADHITALARAGQLQADQRLPSSRQLAEQLNLHRSTVVTAFDE
CEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LRARGIIQTLHGSGSYICSGLFDQALQAPKPQALTTPVLANDQLIAELWRLNHAEGMISL
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
ALGVPAPDMFPSQRFGQLQQRIARRNPQTAWNYTHPQGFYPLRQAIANDLARHGIQTSAE
EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
QLIITNGANEAINLVTQALAVTGDSGLIEEPSFHTTLLNLQQAGIRLNGFAVTHNGPDWA
EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCHH
SLNAALRTGSSHPRFILVVPDYHNPTGMRWASDQRYQLLNWANQQAIPIIEDATYSDLGL
HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC
TGPSQPALRAFDPNVIYIGSYSKSLMPGLRIGFIVANGLLQQQLVSLKTITSGSNESFSQ
CCCCCCCCEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
QILAEYLHAGEYHEQLAWVTSIYQQRRDALLEAIQCYLPTEVHATIADGGFYSWLHLPAD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
QSIMRLFQRALQRGIVIFPGQAFYLNQANQTHNAIRLCFARYPEDVLTHAVRLLGSCF
HHHHHHHHHHHHCCEEEECCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]