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The map label for this gene is ydcP [H]

Identifier: 159897232

GI number: 159897232

Start: 808733

End: 811258

Strand: Reverse

Name: ydcP [H]

Synonym: Haur_0703

Alternate gene names: 159897232

Gene position: 811258-808733 (Counterclockwise)

Preceding gene: 159897236

Following gene: 159897229

Centisome position: 12.78

GC content: 53.44

Gene sequence:

>2526_bases
ATGAGCGAACAACGCCGTTTTTCCAAGCCCGAAGTGATGAGTCCAGCGGGCTATTGGCCGCAGTTGCATGCCGCAATCGA
AGCAGGTGCAGATGCGGTTTATTTTGGTTTGAAGCATTTTACCGCCCGCGCCAAGGTGGGTTTTACGCTCAGCGAGTTGC
CCGACGTAATGCGTACCCTGCATCAACGTGGTGTGCGCGGCTTTGTGACCTTCAATACCTTGGTGTTTGAACACGAATTG
CGCGAAGCCACCCGCTCGTTGGCAGCAATTGCCGAGGCTGGAGCCGATGCGGTGATTGTGCAAGATATTGGCATCGCTCA
GCTTGCCCGCCAAATCGCCCCCGAAATGGAAGTGCATGGCAGCACTCAAATGAGCATCACCAGCGCAGAAGGGGTTGAAT
TAGCGCGTCGTTTCGGAGCCAATCGGGTAGTTTTGGCCCGTGAATTATCGCTGGCTGAAATTGCCGCAATTCGCCAAGCC
ACCGATTGCGAGCTAGAAATGTTTGTCCATGGAGCCTTGTGCGTCTCGTATTCGGGCCAATGTTTCTCCTCGGAAGCATG
GGGCGGGCGTAGTGCCAACCGCGGCCAATGCGCTCAAGCCTGTCGGTTGCCCTACCAATTATTGGTTGATGGCAAGCACA
AACCCTTGGCCGATGCACGGTATTTGCTCTCGCCAGGCGATTTGTATGCTGTGCCCTTGATGCACGATATTATCAAATTG
GGTATTTCGTCGCTGAAAATCGAAGGCCGCTACAAAGATGCCGATTATGTGGCCTTGACTACCAGCGCCTATCGCAAGGC
GGTTGATGAGGCTTGGGCTGGCTTGCCCTTGAGCATTACACCCGCCGAAGAGTTGCAATTAGAGCAAGTCTATTCGCGTG
GCTTAGGCACATTTTTCATCGGCGGAACCAATCATCAAACCGTAGTCAATGGCCGTGCACCGCGTCACCGTGGCGTATTG
ATCGGTACTGTCAGCGATATCTATGGCGAACGGATTGTGCTCAAGCCCCACGAAAATCACGCCATCGCCCCGCTCAAGGC
TGGCGATGGCGTGGTCTTTGATGCCGCCAACTGGCGCAGCCCTGAAGAACGTGAAGAAGGTGGGCGAATTTATGGCATCG
AAGCCTTGCCAACTGGCGAAATTGAGCTACGTTTCGGTCCGCAAGCAATCAAGCCTAACCGCATTCGCATTGGCGATTTG
ATTTGGCGTAGCCACGATCCTGAGCTTGATCGCGCTGCCAAGCCGTTTTTAGAGGCCGCCGCGCCTGTCGCCAAACAACC
TTTGCAGGTGCATGTTGTAGCCCACGAAGGCCAGCCTTTACAATTAACCTGGACGGTCAGCAATTATCCTCAATTCAGCG
TAACCGTGCAATCGCCTGAGCCATTGCCACGCTCGCAGAACCGCGCCTTGACCAACGAATTTCTGTTTGATCAAGCTAGC
CGTTTGGGTAATACCGCCTACAGTTTGGCCGAAATGAATGTTGATAGTAGTGGCCAGCCGTTTGTGCCCAGCTCGTTGCT
GAATAACCTGCGCCGCCAAGCAATCGAACAACTTAGTGCCTTGCAAGCCGCCACGCCAACGCGCCAGATTCAAGCGCCAC
TTGAGGTTTTGGCCCAAGCACAGCAAACTGTTCAAGCAACTCCAAGCCTCAGCAATACGCCTCAATTGCATATTTTGGTA
CGCACGCCTGAGCAATTACAAGCTGCCATCGCCGCCAAACCGGACAGCATCACCCTCGATTATTTGGAATTGTATGGCTT
GAAGCCAGCAGTCGAGTTAGTCCAAGCTCATGGAATTACGGTGCGCGTGGCTAGCCCACGGGTGCTCAAACCTAGCGAAC
AACGAATTATTCACTTTTTGCTCAAGCTTGGCTGCGAAATTGTAGTACGTTCAACGGGCTTACTCGAAGCCTTGCGCCAA
GAGCAACACCCAGCCTTGATTGGCGATTTTAGTCTGAACGCCGCCAATAGCATTACCGCCAACACCCTGCTCGAATTAGG
CTTAGAGCGGATTACGCCGACCCACGATTTGAATGCGGCCCAAGTTGCGGCCTTGGCTGAGCAATTGGGCAGTGCAGCGG
TTGAAGTGATCGCCTATCAACATTTGCCTGTATTCCACACCGAGCATTGTGTGTTTTGCCGCTTCCTCTCAAATGGTACG
AGCTTCAAAGATTGTGGCCATCCCTGCGAGAAGCATCGGGTCGAGTTACGCGATCTGAATGGGCGGGCGCATCCAGTAAT
GGCTGATGTTGGCTGTCGCAATACGGTGTTTGGTGCTGAAGCACAAACGGCTGTGGAGCATCTTGATGCTTGGCGAGCTG
CTGGTATTGTGCATTATCGCTTGGAATTTGTGCACGAAACGGCTGAACAAGTAGCGGCAATTATTGCAGCCTTTGATCGC
ACCTTGCTCGGCCAACAACCCAGCAGTGTTTTGGCCGAGCAATTACGCAAGGCAGCGCCGCAGGGCATCACCCAAGGCAG
TTTGTTTATTCCCAATGATTATCTGCGCGTACCATTGATGCAGTAG

Upstream 100 bases:

>100_bases
ATCATAAAATAACCAATTGGCTAAAATGTGTTAAGCTTAATCCCAACGATGATTAATCCCATGCAATCCCAATTGCTACC
ACAATAGATGTAGGAACTTC

Downstream 100 bases:

>100_bases
TGAGCAAGGGGTCAGGGGCTAGTTGTCAGGGGTCAGAAAAAGTAATGCTAAATTCCTCAATTTCTGGCCCCTAGCCCCTG
AAACCTAGCACCTCGTCACA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 841; Mature: 840

Protein sequence:

>841_residues
MSEQRRFSKPEVMSPAGYWPQLHAAIEAGADAVYFGLKHFTARAKVGFTLSELPDVMRTLHQRGVRGFVTFNTLVFEHEL
REATRSLAAIAEAGADAVIVQDIGIAQLARQIAPEMEVHGSTQMSITSAEGVELARRFGANRVVLARELSLAEIAAIRQA
TDCELEMFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYQLLVDGKHKPLADARYLLSPGDLYAVPLMHDIIKL
GISSLKIEGRYKDADYVALTTSAYRKAVDEAWAGLPLSITPAEELQLEQVYSRGLGTFFIGGTNHQTVVNGRAPRHRGVL
IGTVSDIYGERIVLKPHENHAIAPLKAGDGVVFDAANWRSPEEREEGGRIYGIEALPTGEIELRFGPQAIKPNRIRIGDL
IWRSHDPELDRAAKPFLEAAAPVAKQPLQVHVVAHEGQPLQLTWTVSNYPQFSVTVQSPEPLPRSQNRALTNEFLFDQAS
RLGNTAYSLAEMNVDSSGQPFVPSSLLNNLRRQAIEQLSALQAATPTRQIQAPLEVLAQAQQTVQATPSLSNTPQLHILV
RTPEQLQAAIAAKPDSITLDYLELYGLKPAVELVQAHGITVRVASPRVLKPSEQRIIHFLLKLGCEIVVRSTGLLEALRQ
EQHPALIGDFSLNAANSITANTLLELGLERITPTHDLNAAQVAALAEQLGSAAVEVIAYQHLPVFHTEHCVFCRFLSNGT
SFKDCGHPCEKHRVELRDLNGRAHPVMADVGCRNTVFGAEAQTAVEHLDAWRAAGIVHYRLEFVHETAEQVAAIIAAFDR
TLLGQQPSSVLAEQLRKAAPQGITQGSLFIPNDYLRVPLMQ

Sequences:

>Translated_841_residues
MSEQRRFSKPEVMSPAGYWPQLHAAIEAGADAVYFGLKHFTARAKVGFTLSELPDVMRTLHQRGVRGFVTFNTLVFEHEL
REATRSLAAIAEAGADAVIVQDIGIAQLARQIAPEMEVHGSTQMSITSAEGVELARRFGANRVVLARELSLAEIAAIRQA
TDCELEMFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYQLLVDGKHKPLADARYLLSPGDLYAVPLMHDIIKL
GISSLKIEGRYKDADYVALTTSAYRKAVDEAWAGLPLSITPAEELQLEQVYSRGLGTFFIGGTNHQTVVNGRAPRHRGVL
IGTVSDIYGERIVLKPHENHAIAPLKAGDGVVFDAANWRSPEEREEGGRIYGIEALPTGEIELRFGPQAIKPNRIRIGDL
IWRSHDPELDRAAKPFLEAAAPVAKQPLQVHVVAHEGQPLQLTWTVSNYPQFSVTVQSPEPLPRSQNRALTNEFLFDQAS
RLGNTAYSLAEMNVDSSGQPFVPSSLLNNLRRQAIEQLSALQAATPTRQIQAPLEVLAQAQQTVQATPSLSNTPQLHILV
RTPEQLQAAIAAKPDSITLDYLELYGLKPAVELVQAHGITVRVASPRVLKPSEQRIIHFLLKLGCEIVVRSTGLLEALRQ
EQHPALIGDFSLNAANSITANTLLELGLERITPTHDLNAAQVAALAEQLGSAAVEVIAYQHLPVFHTEHCVFCRFLSNGT
SFKDCGHPCEKHRVELRDLNGRAHPVMADVGCRNTVFGAEAQTAVEHLDAWRAAGIVHYRLEFVHETAEQVAAIIAAFDR
TLLGQQPSSVLAEQLRKAAPQGITQGSLFIPNDYLRVPLMQ
>Mature_840_residues
SEQRRFSKPEVMSPAGYWPQLHAAIEAGADAVYFGLKHFTARAKVGFTLSELPDVMRTLHQRGVRGFVTFNTLVFEHELR
EATRSLAAIAEAGADAVIVQDIGIAQLARQIAPEMEVHGSTQMSITSAEGVELARRFGANRVVLARELSLAEIAAIRQAT
DCELEMFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYQLLVDGKHKPLADARYLLSPGDLYAVPLMHDIIKLG
ISSLKIEGRYKDADYVALTTSAYRKAVDEAWAGLPLSITPAEELQLEQVYSRGLGTFFIGGTNHQTVVNGRAPRHRGVLI
GTVSDIYGERIVLKPHENHAIAPLKAGDGVVFDAANWRSPEEREEGGRIYGIEALPTGEIELRFGPQAIKPNRIRIGDLI
WRSHDPELDRAAKPFLEAAAPVAKQPLQVHVVAHEGQPLQLTWTVSNYPQFSVTVQSPEPLPRSQNRALTNEFLFDQASR
LGNTAYSLAEMNVDSSGQPFVPSSLLNNLRRQAIEQLSALQAATPTRQIQAPLEVLAQAQQTVQATPSLSNTPQLHILVR
TPEQLQAAIAAKPDSITLDYLELYGLKPAVELVQAHGITVRVASPRVLKPSEQRIIHFLLKLGCEIVVRSTGLLEALRQE
QHPALIGDFSLNAANSITANTLLELGLERITPTHDLNAAQVAALAEQLGSAAVEVIAYQHLPVFHTEHCVFCRFLSNGTS
FKDCGHPCEKHRVELRDLNGRAHPVMADVGCRNTVFGAEAQTAVEHLDAWRAAGIVHYRLEFVHETAEQVAAIIAAFDRT
LLGQQPSSVLAEQLRKAAPQGITQGSLFIPNDYLRVPLMQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=536, Percent_Identity=34.3283582089552, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1788397, Length=373, Percent_Identity=32.171581769437, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1789548, Length=329, Percent_Identity=31.306990881459, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 92039; Mature: 91908

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQRRFSKPEVMSPAGYWPQLHAAIEAGADAVYFGLKHFTARAKVGFTLSELPDVMRTL
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHH
HQRGVRGFVTFNTLVFEHELREATRSLAAIAEAGADAVIVQDIGIAQLARQIAPEMEVHG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCC
STQMSITSAEGVELARRFGANRVVLARELSLAEIAAIRQATDCELEMFVHGALCVSYSGQ
CCEEEEECHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCC
CFSSEAWGGRSANRGQCAQACRLPYQLLVDGKHKPLADARYLLSPGDLYAVPLMHDIIKL
EECCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCEEEHHHHHHHHHH
GISSLKIEGRYKDADYVALTTSAYRKAVDEAWAGLPLSITPAEELQLEQVYSRGLGTFFI
CHHHEEEECEECCCCEEEEEHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCEEEE
GGTNHQTVVNGRAPRHRGVLIGTVSDIYGERIVLKPHENHAIAPLKAGDGVVFDAANWRS
CCCCCCEEECCCCCCCCCEEEEEHHHHHCCEEEEECCCCCCEEEEECCCCEEEECCCCCC
PEEREEGGRIYGIEALPTGEIELRFGPQAIKPNRIRIGDLIWRSHDPELDRAAKPFLEAA
CHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCEEEEHHEECCCCCCHHHHHHHHHHHH
APVAKQPLQVHVVAHEGQPLQLTWTVSNYPQFSVTVQSPEPLPRSQNRALTNEFLFDQAS
CHHHCCCEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
RLGNTAYSLAEMNVDSSGQPFVPSSLLNNLRRQAIEQLSALQAATPTRQIQAPLEVLAQA
HCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QQTVQATPSLSNTPQLHILVRTPEQLQAAIAAKPDSITLDYLELYGLKPAVELVQAHGIT
HHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHCCEE
VRVASPRVLKPSEQRIIHFLLKLGCEIVVRSTGLLEALRQEQHPALIGDFSLNAANSITA
EEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEECCCCCCCCHHH
NTLLELGLERITPTHDLNAAQVAALAEQLGSAAVEVIAYQHLPVFHTEHCVFCRFLSNGT
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHEEEHHHCCCC
SFKDCGHPCEKHRVELRDLNGRAHPVMADVGCRNTVFGAEAQTAVEHLDAWRAAGIVHYR
CCHHCCCCHHHHCEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
LEFVHETAEQVAAIIAAFDRTLLGQQPSSVLAEQLRKAAPQGITQGSLFIPNDYLRVPLM
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCEECCCC
Q
C
>Mature Secondary Structure 
SEQRRFSKPEVMSPAGYWPQLHAAIEAGADAVYFGLKHFTARAKVGFTLSELPDVMRTL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHH
HQRGVRGFVTFNTLVFEHELREATRSLAAIAEAGADAVIVQDIGIAQLARQIAPEMEVHG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCC
STQMSITSAEGVELARRFGANRVVLARELSLAEIAAIRQATDCELEMFVHGALCVSYSGQ
CCEEEEECHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCC
CFSSEAWGGRSANRGQCAQACRLPYQLLVDGKHKPLADARYLLSPGDLYAVPLMHDIIKL
EECCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCEEEHHHHHHHHHH
GISSLKIEGRYKDADYVALTTSAYRKAVDEAWAGLPLSITPAEELQLEQVYSRGLGTFFI
CHHHEEEECEECCCCEEEEEHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCEEEE
GGTNHQTVVNGRAPRHRGVLIGTVSDIYGERIVLKPHENHAIAPLKAGDGVVFDAANWRS
CCCCCCEEECCCCCCCCCEEEEEHHHHHCCEEEEECCCCCCEEEEECCCCEEEECCCCCC
PEEREEGGRIYGIEALPTGEIELRFGPQAIKPNRIRIGDLIWRSHDPELDRAAKPFLEAA
CHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCEEEEHHEECCCCCCHHHHHHHHHHHH
APVAKQPLQVHVVAHEGQPLQLTWTVSNYPQFSVTVQSPEPLPRSQNRALTNEFLFDQAS
CHHHCCCEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
RLGNTAYSLAEMNVDSSGQPFVPSSLLNNLRRQAIEQLSALQAATPTRQIQAPLEVLAQA
HCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QQTVQATPSLSNTPQLHILVRTPEQLQAAIAAKPDSITLDYLELYGLKPAVELVQAHGIT
HHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHCCEE
VRVASPRVLKPSEQRIIHFLLKLGCEIVVRSTGLLEALRQEQHPALIGDFSLNAANSITA
EEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEECCCCCCCCHHH
NTLLELGLERITPTHDLNAAQVAALAEQLGSAAVEVIAYQHLPVFHTEHCVFCRFLSNGT
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHEEEHHHCCCC
SFKDCGHPCEKHRVELRDLNGRAHPVMADVGCRNTVFGAEAQTAVEHLDAWRAAGIVHYR
CCHHCCCCHHHHCEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
LEFVHETAEQVAAIIAAFDRTLLGQQPSSVLAEQLRKAAPQGITQGSLFIPNDYLRVPLM
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCEECCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]