| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yjbR [C]
Identifier: 159896842
GI number: 159896842
Start: 369280
End: 369630
Strand: Reverse
Name: yjbR [C]
Synonym: Haur_0309
Alternate gene names: 159896842
Gene position: 369630-369280 (Counterclockwise)
Preceding gene: 159896843
Following gene: 159896841
Centisome position: 5.82
GC content: 48.72
Gene sequence:
>351_bases ATGAGCAACCACGTTGATTATGCCCAAGCTCGCAGCTATTGCCTGAGCCTTGACGACGTAATTGAAGATTATCCATTTGG GATTGAACCCTTGGTGTTTAAAATTGGCGATGAGCGCGGCAAAATGTTTGCCCTACTTGTTCGCAGTGAGCCAGCCCAAA TTAGCCTGAAATGCGATCCTGATCGGGCTGAGATGTTGCGCGAACAATATCCAGCGATTACGGCTGGCTATCATTTAAAT AAGCGCCATTGGAACACAATTGTGCTTGATGGCAGCGTGCCCGATGAGGAATGTTTGGCGCTGATCGCCCATTCCTATGA TTTAGTCCGGCCAAAACGGCGTAAAGCCTAG
Upstream 100 bases:
>100_bases GCCTGCGAATTGTGCTTGAGTGATGGCGTGACCAAAGCCATGAACGCCGTCAATGGCGAAGCCCCCAAGAAAAGTAAAGA TCAAGCAAAGGAGCCAGCCA
Downstream 100 bases:
>100_bases GCTTTTCCCTCACCCCCAACCCCTCTCACTGTGGCGGGCGAGGGGAGCTTGATTTAAGTTCATTTGAGGTTGATTAATGC TGCCGTTGCAGATTGTACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MSNHVDYAQARSYCLSLDDVIEDYPFGIEPLVFKIGDERGKMFALLVRSEPAQISLKCDPDRAEMLREQYPAITAGYHLN KRHWNTIVLDGSVPDEECLALIAHSYDLVRPKRRKA
Sequences:
>Translated_116_residues MSNHVDYAQARSYCLSLDDVIEDYPFGIEPLVFKIGDERGKMFALLVRSEPAQISLKCDPDRAEMLREQYPAITAGYHLN KRHWNTIVLDGSVPDEECLALIAHSYDLVRPKRRKA >Mature_115_residues SNHVDYAQARSYCLSLDDVIEDYPFGIEPLVFKIGDERGKMFALLVRSEPAQISLKCDPDRAEMLREQYPAITAGYHLNK RHWNTIVLDGSVPDEECLALIAHSYDLVRPKRRKA
Specific function: Unknown
COG id: COG2315
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367342, Length=80, Percent_Identity=41.25, Blast_Score=62, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13293; Mature: 13162
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNHVDYAQARSYCLSLDDVIEDYPFGIEPLVFKIGDERGKMFALLVRSEPAQISLKCDP CCCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECC DRAEMLREQYPAITAGYHLNKRHWNTIVLDGSVPDEECLALIAHSYDLVRPKRRKA CHHHHHHHHCCCEECCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SNHVDYAQARSYCLSLDDVIEDYPFGIEPLVFKIGDERGKMFALLVRSEPAQISLKCDP CCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECC DRAEMLREQYPAITAGYHLNKRHWNTIVLDGSVPDEECLALIAHSYDLVRPKRRKA CHHHHHHHHCCCEECCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA