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The map label for this gene is rbsR [H]

Identifier: 159896830

GI number: 159896830

Start: 354584

End: 355606

Strand: Direct

Name: rbsR [H]

Synonym: Haur_0297

Alternate gene names: 159896830

Gene position: 354584-355606 (Clockwise)

Preceding gene: 159896825

Following gene: 159896831

Centisome position: 5.59

GC content: 53.76

Gene sequence:

>1023_bases
GTGGAACAACTCACGATTCGCCAAATAGCCCAACTTGCCAATGTTTCACGCTCGACCGTTTCGCGGGTAATCAACAATCA
TCCCAGCGTGCGGCCCGAAGTGCGACAACGGGTGTTGGAAGTTATTCGCGAACAAGACTATGTTCCGCAGGCAGCCGCTC
GTAGTCTGGCAAGCCGCCGAACCAATGTGGTGACCCTGTTGATCCCACGCAGCTCGGCAATTATCTTCACTGACCCATTC
TTCCCATTAATCATCCAAGGAATTACCGAAACCTGTTCTGAGCGGGATTATTCGGTGATGCTTTCGATGGTGACTGGCAC
CCAAGAACGGGATTTCTATCAGCGGGTATTACGCAGTCGGATGACCGACGGTCTGTTGATGCTTTCGAGCGATATTGATG
ACCCAGTGTTACCCTTGCTGATTAACGACCAAATGCCGTTGGTCTTAATCGGCGAACACCCGTATATGCAGCCAATGTAT
ACCGTTGACGTGGCAAATCGGGCCGGGGCAGTGCTAGCAGTCAGCCATTTATTGCAACTTGGCCATCGACGGATTGGGGC
GATTACAGGCCTACTGCAGATGAAAACCGCCATTGATCGCCGTGACGGCTATAAGCAAGCGTTATTGCAAGCAGGCGTTG
CCATCGAGCATTCGTTGATGATCGAGGGCGAATTTACCCAAGAGGGTGGCTATGCTGCAATGCGCCAATTGCTCAGCCTT
GAACAGCGACCAAGCGCTGTCTTTGTGGCCAGCGACACCATGGCATTAGGAGCCTTACGGGCTATTTACGAGGCCGGGTT
ACATGCTCCCCACGATATTTCGCTGATCGGCTTTGATGATGTGCCAGGCGCGGCCTATACAACCCCCGCCCTGACGACGA
TTCACCAACCAATTCAGAAGCTTGGTAGTACCGCCGCCACGATGTTGCTTGACCATCTCGAAGGGCGACCACCGCTCCAG
CAACACATCCGTCTCTCACCTTCGTTAGTCTTACGCCAATCGTGCGGGCCACGGGTCGCCTAA

Upstream 100 bases:

>100_bases
AAAACACCTGCTTGACAAAATACATAAGATCTTTTATTCTCTCCCTAAGACTTCTGAGACCGGTTCCAAAGTAATTTAAA
TCAGTTTGTGGGGTTTCGCC

Downstream 100 bases:

>100_bases
ACAGCACCCACGGATTCACTAGATCGCATGGTCTGTCGAACACGGGAGTTTTTGGGAGCGATCCCAAATGAGTTCGAATG
GACACTGATGTTCAACCCAC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MEQLTIRQIAQLANVSRSTVSRVINNHPSVRPEVRQRVLEVIREQDYVPQAAARSLASRRTNVVTLLIPRSSAIIFTDPF
FPLIIQGITETCSERDYSVMLSMVTGTQERDFYQRVLRSRMTDGLLMLSSDIDDPVLPLLINDQMPLVLIGEHPYMQPMY
TVDVANRAGAVLAVSHLLQLGHRRIGAITGLLQMKTAIDRRDGYKQALLQAGVAIEHSLMIEGEFTQEGGYAAMRQLLSL
EQRPSAVFVASDTMALGALRAIYEAGLHAPHDISLIGFDDVPGAAYTTPALTTIHQPIQKLGSTAATMLLDHLEGRPPLQ
QHIRLSPSLVLRQSCGPRVA

Sequences:

>Translated_340_residues
MEQLTIRQIAQLANVSRSTVSRVINNHPSVRPEVRQRVLEVIREQDYVPQAAARSLASRRTNVVTLLIPRSSAIIFTDPF
FPLIIQGITETCSERDYSVMLSMVTGTQERDFYQRVLRSRMTDGLLMLSSDIDDPVLPLLINDQMPLVLIGEHPYMQPMY
TVDVANRAGAVLAVSHLLQLGHRRIGAITGLLQMKTAIDRRDGYKQALLQAGVAIEHSLMIEGEFTQEGGYAAMRQLLSL
EQRPSAVFVASDTMALGALRAIYEAGLHAPHDISLIGFDDVPGAAYTTPALTTIHQPIQKLGSTAATMLLDHLEGRPPLQ
QHIRLSPSLVLRQSCGPRVA
>Mature_340_residues
MEQLTIRQIAQLANVSRSTVSRVINNHPSVRPEVRQRVLEVIREQDYVPQAAARSLASRRTNVVTLLIPRSSAIIFTDPF
FPLIIQGITETCSERDYSVMLSMVTGTQERDFYQRVLRSRMTDGLLMLSSDIDDPVLPLLINDQMPLVLIGEHPYMQPMY
TVDVANRAGAVLAVSHLLQLGHRRIGAITGLLQMKTAIDRRDGYKQALLQAGVAIEHSLMIEGEFTQEGGYAAMRQLLSL
EQRPSAVFVASDTMALGALRAIYEAGLHAPHDISLIGFDDVPGAAYTTPALTTIHQPIQKLGSTAATMLLDHLEGRPPLQ
QHIRLSPSLVLRQSCGPRVA

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=339, Percent_Identity=38.3480825958702, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1790194, Length=333, Percent_Identity=37.5375375375375, Blast_Score=204, Evalue=6e-54,
Organism=Escherichia coli, GI1790369, Length=319, Percent_Identity=36.0501567398119, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1787580, Length=332, Percent_Identity=31.3253012048193, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1789202, Length=336, Percent_Identity=34.5238095238095, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788474, Length=341, Percent_Identity=31.3782991202346, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789068, Length=304, Percent_Identity=28.9473684210526, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1786540, Length=331, Percent_Identity=29.3051359516616, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1789456, Length=316, Percent_Identity=28.1645569620253, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI48994940, Length=313, Percent_Identity=24.6006389776358, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787906, Length=309, Percent_Identity=25.8899676375405, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790715, Length=325, Percent_Identity=25.5384615384615, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790689, Length=324, Percent_Identity=24.6913580246914, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37530; Mature: 37530

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLTIRQIAQLANVSRSTVSRVINNHPSVRPEVRQRVLEVIREQDYVPQAAARSLASRR
CCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
TNVVTLLIPRSSAIIFTDPFFPLIIQGITETCSERDYSVMLSMVTGTQERDFYQRVLRSR
CCEEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
MTDGLLMLSSDIDDPVLPLLINDQMPLVLIGEHPYMQPMYTVDVANRAGAVLAVSHLLQL
CCCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHH
GHRRIGAITGLLQMKTAIDRRDGYKQALLQAGVAIEHSLMIEGEFTQEGGYAAMRQLLSL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHH
EQRPSAVFVASDTMALGALRAIYEAGLHAPHDISLIGFDDVPGAAYTTPALTTIHQPIQK
HCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
LGSTAATMLLDHLEGRPPLQQHIRLSPSLVLRQSCGPRVA
HHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MEQLTIRQIAQLANVSRSTVSRVINNHPSVRPEVRQRVLEVIREQDYVPQAAARSLASRR
CCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
TNVVTLLIPRSSAIIFTDPFFPLIIQGITETCSERDYSVMLSMVTGTQERDFYQRVLRSR
CCEEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
MTDGLLMLSSDIDDPVLPLLINDQMPLVLIGEHPYMQPMYTVDVANRAGAVLAVSHLLQL
CCCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHH
GHRRIGAITGLLQMKTAIDRRDGYKQALLQAGVAIEHSLMIEGEFTQEGGYAAMRQLLSL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHH
EQRPSAVFVASDTMALGALRAIYEAGLHAPHDISLIGFDDVPGAAYTTPALTTIHQPIQK
HCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
LGSTAATMLLDHLEGRPPLQQHIRLSPSLVLRQSCGPRVA
HHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]