| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is recG [H]
Identifier: 159896821
GI number: 159896821
Start: 337162
End: 339660
Strand: Direct
Name: recG [H]
Synonym: Haur_0288
Alternate gene names: 159896821
Gene position: 337162-339660 (Clockwise)
Preceding gene: 159896819
Following gene: 159896822
Centisome position: 5.31
GC content: 52.14
Gene sequence:
>2499_bases ATGTTCTTTGTTTTGATGGTTATGCAAGCAAATCAGCATATTATTGAACTTGGCAAAACCTTGGCTGCCGAAGAAAAGGC CGGCTGCGACGATACTGCAACCGACCACGGCATCAGCATATTTCTGCGCGAATGGCAGGCCCAACATCCCCAAGCCTTGC ATGAACCAGTTGTGCAGGGCGTGCTTGATGCCCTCGATGGCTACTCCGAGTTGAGCCATGCCGAACGTGAGGCTCGTTTG AGTGTTGCGCTTGATCGGCTGCGCAATTTGTTTCGCAAACAGCCCAAAGCTCCGGCTGAACCCGTGGGTGCTGTGCCGCC AATCGATACCTTGCTGAAAACTTTGCAAGGCATTGGCCCAAGTACTGCCCGTTCATTTGCCAAACTCGGGGTGCATACGC TCGAAGATTTGCTCTATCACGTGCCGCATCGCTACGACGATTTCAGCAAACGCAAGCAGATTTGTGATTTGGTGGTGGGC GAAACTGATACGGTGATTGTAACCGTCGATGCAATTAAAAGCTTCAATGCCAAAGGTCGCCAAGGTGTGGAAATTACCGT CGGCGACGATACTGGCGTGCTCAAGGCTTCGTGGTTTCGTGGTACGTGGATGGCCAAGCAGTTTCGCGAAGGCATGCGGA TTGTGCTCAGTGGCAAAGTCAGCATGTTCCGCGAAATGAAATCGATGAGCAACCCACAGTGGGAGCCATTTGTTGAAGAC GATTTGGTGCATACAGGTCGCCTTGTGCCCGTCCACCCACTGACCAAAGGCTTGCAAGATCGCAATGCCCGTCAAGTTAT TAAACGGGTCGTTGATGCAGTGACCCCAACCTTGTCCGACCCGTTGCCGATTGAACTCCGCGAACGAGCTGGATTATTGC CCTTGGGCGTTGCCATCAGCCAAATACATTTCCCTGATAGTTGGGCAATGGTGCAACGCGCCCGCCAACGCTTGGGCTTT GATGAATTTTTGTACATTCAATTGGGCGTATTACAGCGCAAACGGCTGTATCAAGGCGTGCAAGGCCAGCCAATTGCCTT TAATCAAGCGATTCATGATGCCTACCTGAGCAGTTTGCCCTTTGCTTTGACCAACGCCCAAACTCGGACATTTAACGAAA TTTGCCGTGATTTGGAGCGGCCAGTGCCCATGACACGGCTGGTGCAGGGCGATGTTGGTTCGGGCAAAACGGCGGTGGCG GCGGCAGCTTTGGTGCAGGCAGTCGCAGCGGGTTTTCAAGGGGCGATGATGGCTCCGACTGAAATTTTGGCCGAGCAACA TTATCGCGGGCTGAAAAAACTGCTTGCCAATGTTAAAATTCCAGGCCGTGAAACCAATAGCAATGGCGATTGGCGCGATG AACTTGATCAAGAAAAACGTAATCGCCTCGCCCAAATTAAGCAATTATTGATGCTGGCCGACGAGCCAGAACCCGAGCCA GGTGGCATTCGGGTTGCGCTGCTAACTGGTAGCCTCAAAGCTCGCCAACGCCGCGAAGCGCTCAAACTGATCGCCGATGG CGAAGTTGATATCATCATTGGAACCCATGCCCTGATTCAAGCCAATGTTGATTATCAAGCGCTCGGCTTGGCAGTGGTCG ATGAGCAACATCGCTTTGGGGTTGAGCAGCGCGAGGCACTCAAACGCAAGGGCTTCAATCCACATCTTTTGGTGATGACC GCCACGCCAATTCCGCGCTCGTTGGCCTTGACGATTTACGGCGATCTTGATGTTTCAGTGATCGACGAGCGCCCGCCAGG CCGCCAGCCAATTCGCACCAAATGGATCAGCTCGGGCGAACGCAGCAAAGCCTACAAACATATGCGCAAGGAGATTGCGG CTGGCCGTCAAGCCTTTGTAATTTGCCCGTTAGTTGAGGAAAGCGAAAAACTCGAAGATGTAAAATCGGCGATTGTTGAG CAAGAGCATTTGCAACACGAGATTTTCCCTGATCTCAAGGTAGGCTTGATTCATGGCCGTATGACTTCGAGCGAAAAAGA CACAATTATGGCCCAGTTTCGCGACCGCGAATTCGATATTTTGGTGGCGACGGCGGTGGTTGAAGTTGGGATTGATATTC CCAATGCCACGACGATTATGATCGAAGGTGCTGAGCGTTTTGGTTTGGCCCAATTGCACCAATTTCGCGGGCGGGTTGGG CGGGGCAGCCATCAATCGTTCTGCGTTTTGGTCAGCGATAAAGAAGATAACGATGTAACCGTGGCGCGGCTTTCGTCGAT GGAAGAGAGCGAAGATGGCTTCCGTTTGGCTGAAATTGACCTTGAATTGCGTGGGCCAGGTGAGTTTTTTGGTATTCGCC AGAGCGGCACGCCTGATCTTAAAGTTGCCCAGTTGACCGATACGCGCTTGCTGCATGCGGCGCGGATTGAAGCTGAGCGA ATATTGAAACTTGATCCTGAATTGGAATTACCTGAACATGCCAAAGTCCGCGAAAAACTCCAAGCTTTTTGGGCGGGCAT GGAAACTCAAAGCAACTAA
Upstream 100 bases:
>100_bases AGCGCCATTGGGGTCTGTCGCAAGACCTACTTGCTCGTGCCATTTCTGGTACAATAGACGCACAGTTGAGCGACTAGATC AGAACATAGAGCTAGTTTCT
Downstream 100 bases:
>100_bases TTTGTGGCGAATTTGCAACATTGCGTGACTAAAACACGAAAAACCCTCTTGACAGAGAGTGATTGCTGCGGTACTATATA TTCAAACCTTCTCCTCTCTC
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 832; Mature: 832
Protein sequence:
>832_residues MFFVLMVMQANQHIIELGKTLAAEEKAGCDDTATDHGISIFLREWQAQHPQALHEPVVQGVLDALDGYSELSHAEREARL SVALDRLRNLFRKQPKAPAEPVGAVPPIDTLLKTLQGIGPSTARSFAKLGVHTLEDLLYHVPHRYDDFSKRKQICDLVVG ETDTVIVTVDAIKSFNAKGRQGVEITVGDDTGVLKASWFRGTWMAKQFREGMRIVLSGKVSMFREMKSMSNPQWEPFVED DLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVTPTLSDPLPIELRERAGLLPLGVAISQIHFPDSWAMVQRARQRLGF DEFLYIQLGVLQRKRLYQGVQGQPIAFNQAIHDAYLSSLPFALTNAQTRTFNEICRDLERPVPMTRLVQGDVGSGKTAVA AAALVQAVAAGFQGAMMAPTEILAEQHYRGLKKLLANVKIPGRETNSNGDWRDELDQEKRNRLAQIKQLLMLADEPEPEP GGIRVALLTGSLKARQRREALKLIADGEVDIIIGTHALIQANVDYQALGLAVVDEQHRFGVEQREALKRKGFNPHLLVMT ATPIPRSLALTIYGDLDVSVIDERPPGRQPIRTKWISSGERSKAYKHMRKEIAAGRQAFVICPLVEESEKLEDVKSAIVE QEHLQHEIFPDLKVGLIHGRMTSSEKDTIMAQFRDREFDILVATAVVEVGIDIPNATTIMIEGAERFGLAQLHQFRGRVG RGSHQSFCVLVSDKEDNDVTVARLSSMEESEDGFRLAEIDLELRGPGEFFGIRQSGTPDLKVAQLTDTRLLHAARIEAER ILKLDPELELPEHAKVREKLQAFWAGMETQSN
Sequences:
>Translated_832_residues MFFVLMVMQANQHIIELGKTLAAEEKAGCDDTATDHGISIFLREWQAQHPQALHEPVVQGVLDALDGYSELSHAEREARL SVALDRLRNLFRKQPKAPAEPVGAVPPIDTLLKTLQGIGPSTARSFAKLGVHTLEDLLYHVPHRYDDFSKRKQICDLVVG ETDTVIVTVDAIKSFNAKGRQGVEITVGDDTGVLKASWFRGTWMAKQFREGMRIVLSGKVSMFREMKSMSNPQWEPFVED DLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVTPTLSDPLPIELRERAGLLPLGVAISQIHFPDSWAMVQRARQRLGF DEFLYIQLGVLQRKRLYQGVQGQPIAFNQAIHDAYLSSLPFALTNAQTRTFNEICRDLERPVPMTRLVQGDVGSGKTAVA AAALVQAVAAGFQGAMMAPTEILAEQHYRGLKKLLANVKIPGRETNSNGDWRDELDQEKRNRLAQIKQLLMLADEPEPEP GGIRVALLTGSLKARQRREALKLIADGEVDIIIGTHALIQANVDYQALGLAVVDEQHRFGVEQREALKRKGFNPHLLVMT ATPIPRSLALTIYGDLDVSVIDERPPGRQPIRTKWISSGERSKAYKHMRKEIAAGRQAFVICPLVEESEKLEDVKSAIVE QEHLQHEIFPDLKVGLIHGRMTSSEKDTIMAQFRDREFDILVATAVVEVGIDIPNATTIMIEGAERFGLAQLHQFRGRVG RGSHQSFCVLVSDKEDNDVTVARLSSMEESEDGFRLAEIDLELRGPGEFFGIRQSGTPDLKVAQLTDTRLLHAARIEAER ILKLDPELELPEHAKVREKLQAFWAGMETQSN >Mature_832_residues MFFVLMVMQANQHIIELGKTLAAEEKAGCDDTATDHGISIFLREWQAQHPQALHEPVVQGVLDALDGYSELSHAEREARL SVALDRLRNLFRKQPKAPAEPVGAVPPIDTLLKTLQGIGPSTARSFAKLGVHTLEDLLYHVPHRYDDFSKRKQICDLVVG ETDTVIVTVDAIKSFNAKGRQGVEITVGDDTGVLKASWFRGTWMAKQFREGMRIVLSGKVSMFREMKSMSNPQWEPFVED DLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVTPTLSDPLPIELRERAGLLPLGVAISQIHFPDSWAMVQRARQRLGF DEFLYIQLGVLQRKRLYQGVQGQPIAFNQAIHDAYLSSLPFALTNAQTRTFNEICRDLERPVPMTRLVQGDVGSGKTAVA AAALVQAVAAGFQGAMMAPTEILAEQHYRGLKKLLANVKIPGRETNSNGDWRDELDQEKRNRLAQIKQLLMLADEPEPEP GGIRVALLTGSLKARQRREALKLIADGEVDIIIGTHALIQANVDYQALGLAVVDEQHRFGVEQREALKRKGFNPHLLVMT ATPIPRSLALTIYGDLDVSVIDERPPGRQPIRTKWISSGERSKAYKHMRKEIAAGRQAFVICPLVEESEKLEDVKSAIVE QEHLQHEIFPDLKVGLIHGRMTSSEKDTIMAQFRDREFDILVATAVVEVGIDIPNATTIMIEGAERFGLAQLHQFRGRVG RGSHQSFCVLVSDKEDNDVTVARLSSMEESEDGFRLAEIDLELRGPGEFFGIRQSGTPDLKVAQLTDTRLLHAARIEAER ILKLDPELELPEHAKVREKLQAFWAGMETQSN
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=692, Percent_Identity=39.0173410404624, Blast_Score=426, Evalue=1e-120, Organism=Escherichia coli, GI1787357, Length=431, Percent_Identity=34.1067285382831, Blast_Score=245, Evalue=9e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 92820; Mature: 92820
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFVLMVMQANQHIIELGKTLAAEEKAGCDDTATDHGISIFLREWQAQHPQALHEPVVQG CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH VLDALDGYSELSHAEREARLSVALDRLRNLFRKQPKAPAEPVGAVPPIDTLLKTLQGIGP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC STARSFAKLGVHTLEDLLYHVPHRYDDFSKRKQICDLVVGETDTVIVTVDAIKSFNAKGR HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCC QGVEITVGDDTGVLKASWFRGTWMAKQFREGMRIVLSGKVSMFREMKSMSNPQWEPFVED CCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCCH DLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVTPTLSDPLPIELRERAGLLPLGVAIS HHHHCCCEEECCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHH QIHFPDSWAMVQRARQRLGFDEFLYIQLGVLQRKRLYQGVQGQPIAFNQAIHDAYLSSLP HEECCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCC FALTNAQTRTFNEICRDLERPVPMTRLVQGDVGSGKTAVAAAALVQAVAAGFQGAMMAPT HHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH EILAEQHYRGLKKLLANVKIPGRETNSNGDWRDELDQEKRNRLAQIKQLLMLADEPEPEP HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GGIRVALLTGSLKARQRREALKLIADGEVDIIIGTHALIQANVDYQALGLAVVDEQHRFG CCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCHHHCCEEEECCHHHCC VEQREALKRKGFNPHLLVMTATPIPRSLALTIYGDLDVSVIDERPPGRQPIRTKWISSGE CHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCEEEECCCCCCCCCHHHHHHCCCH RSKAYKHMRKEIAAGRQAFVICPLVEESEKLEDVKSAIVEQEHLQHEIFPDLKVGLIHGR HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC MTSSEKDTIMAQFRDREFDILVATAVVEVGIDIPNATTIMIEGAERFGLAQLHQFRGRVG CCCCCHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCC RGSHQSFCVLVSDKEDNDVTVARLSSMEESEDGFRLAEIDLELRGPGEFFGIRQSGTPDL CCCCCEEEEEEECCCCCCEEHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCE KVAQLTDTRLLHAARIEAERILKLDPELELPEHAKVREKLQAFWAGMETQSN EEEEECHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MFFVLMVMQANQHIIELGKTLAAEEKAGCDDTATDHGISIFLREWQAQHPQALHEPVVQG CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH VLDALDGYSELSHAEREARLSVALDRLRNLFRKQPKAPAEPVGAVPPIDTLLKTLQGIGP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC STARSFAKLGVHTLEDLLYHVPHRYDDFSKRKQICDLVVGETDTVIVTVDAIKSFNAKGR HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCC QGVEITVGDDTGVLKASWFRGTWMAKQFREGMRIVLSGKVSMFREMKSMSNPQWEPFVED CCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCCH DLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVTPTLSDPLPIELRERAGLLPLGVAIS HHHHCCCEEECCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHH QIHFPDSWAMVQRARQRLGFDEFLYIQLGVLQRKRLYQGVQGQPIAFNQAIHDAYLSSLP HEECCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCC FALTNAQTRTFNEICRDLERPVPMTRLVQGDVGSGKTAVAAAALVQAVAAGFQGAMMAPT HHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH EILAEQHYRGLKKLLANVKIPGRETNSNGDWRDELDQEKRNRLAQIKQLLMLADEPEPEP HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GGIRVALLTGSLKARQRREALKLIADGEVDIIIGTHALIQANVDYQALGLAVVDEQHRFG CCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCHHHCCEEEECCHHHCC VEQREALKRKGFNPHLLVMTATPIPRSLALTIYGDLDVSVIDERPPGRQPIRTKWISSGE CHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCEEEECCCCCCCCCHHHHHHCCCH RSKAYKHMRKEIAAGRQAFVICPLVEESEKLEDVKSAIVEQEHLQHEIFPDLKVGLIHGR HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC MTSSEKDTIMAQFRDREFDILVATAVVEVGIDIPNATTIMIEGAERFGLAQLHQFRGRVG CCCCCHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCC RGSHQSFCVLVSDKEDNDVTVARLSSMEESEDGFRLAEIDLELRGPGEFFGIRQSGTPDL CCCCCEEEEEEECCCCCCEEHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCE KVAQLTDTRLLHAARIEAERILKLDPELELPEHAKVREKLQAFWAGMETQSN EEEEECHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]