| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896776
Identifier: 159896776
GI number: 159896776
Start: 281522
End: 282214
Strand: Reverse
Name: 159896776
Synonym: Haur_0243
Alternate gene names: NA
Gene position: 282214-281522 (Counterclockwise)
Preceding gene: 159896777
Following gene: 159896775
Centisome position: 4.45
GC content: 42.14
Gene sequence:
>693_bases ATGGCTCGACCTGCTGCTAGCAATCCTTTCTTTCGCACATGGTCACCAACCATGGCCTATGTTCTAGGCTATTGGTGGGC TGATGGATATATGCGAATTCATTCCAACACTGGTGGTCATTTTGTTCAGATCGCTAGTATTGATATAGAACACTTACAAG CAATTGCCGATGCTATGGGTGCGACAACAGCTTTGCGTCAAGTACGTAAAGAATCAACCTGTCACGAAATGGTTATTTGC AATCAAGGCTTGTATCACGATCTACTCAATCTTGGGGGAATTCCAAATAAATCGCATGTTATAGGCTTTCCTAATGTACC AACCGAATATCTCGTGGATTTTATTCGTGGGTTTATTGATGGTGACGGTACCTTAGTTTGGAATGGAGATCGGCCTGTCA TTCAAATTTACTCTGGTTCTCAGCAGTTACTGCTGGAAACAGGTAGATGTATTGAATTAATGACTGGAATTCCAGCACCA AATATTAGCCATAATCGCAATAATTATTACATCAAGTGGAGCACAATTCGTGCTAAGTGTTTAGCAATATGGCTGTATCA TAATAATAGCCTGATGCTAGCACGTAAGGCTGCTATCGCGCAGCAATTTGAGCAATGGCAACCAAAGAAGTCGCCTGAGC GGGGAACAATTACCGAGAAGATGCGCTTGCATTTTGCAAACTATCTTCCTTAA
Upstream 100 bases:
>100_bases GATGGAAAAAGGCGAACTCTAAACTTCGGTTGCGATCCATTGCTCTCGCGGTAGTTCCCAATGACGTGAACTACCGCCTC TCTATCGCACGGTGCTAACC
Downstream 100 bases:
>100_bases CCGAGGAGCGTTCAACCATGCTCGAAATCAATGAATTCAATGCAATTCGTATCAGTCTCGCTTCACCAGAAGATATCCTG AGCTGGTCGCACGGTGAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MARPAASNPFFRTWSPTMAYVLGYWWADGYMRIHSNTGGHFVQIASIDIEHLQAIADAMGATTALRQVRKESTCHEMVIC NQGLYHDLLNLGGIPNKSHVIGFPNVPTEYLVDFIRGFIDGDGTLVWNGDRPVIQIYSGSQQLLLETGRCIELMTGIPAP NISHNRNNYYIKWSTIRAKCLAIWLYHNNSLMLARKAAIAQQFEQWQPKKSPERGTITEKMRLHFANYLP
Sequences:
>Translated_230_residues MARPAASNPFFRTWSPTMAYVLGYWWADGYMRIHSNTGGHFVQIASIDIEHLQAIADAMGATTALRQVRKESTCHEMVIC NQGLYHDLLNLGGIPNKSHVIGFPNVPTEYLVDFIRGFIDGDGTLVWNGDRPVIQIYSGSQQLLLETGRCIELMTGIPAP NISHNRNNYYIKWSTIRAKCLAIWLYHNNSLMLARKAAIAQQFEQWQPKKSPERGTITEKMRLHFANYLP >Mature_229_residues ARPAASNPFFRTWSPTMAYVLGYWWADGYMRIHSNTGGHFVQIASIDIEHLQAIADAMGATTALRQVRKESTCHEMVICN QGLYHDLLNLGGIPNKSHVIGFPNVPTEYLVDFIRGFIDGDGTLVWNGDRPVIQIYSGSQQLLLETGRCIELMTGIPAPN ISHNRNNYYIKWSTIRAKCLAIWLYHNNSLMLARKAAIAQQFEQWQPKKSPERGTITEKMRLHFANYLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26123; Mature: 25992
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS50819 INTEIN_ENDONUCLEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPAASNPFFRTWSPTMAYVLGYWWADGYMRIHSNTGGHFVQIASIDIEHLQAIADAMG CCCCCCCCCCEECCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHH ATTALRQVRKESTCHEMVICNQGLYHDLLNLGGIPNKSHVIGFPNVPTEYLVDFIRGFID HHHHHHHHHHHCCHHHHEEECCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCC GDGTLVWNGDRPVIQIYSGSQQLLLETGRCIELMTGIPAPNISHNRNNYYIKWSTIRAKC CCCEEEECCCCCEEEEECCCHHEEHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEE LAIWLYHNNSLMLARKAAIAQQFEQWQPKKSPERGTITEKMRLHFANYLP EEEEEEECCCEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure ARPAASNPFFRTWSPTMAYVLGYWWADGYMRIHSNTGGHFVQIASIDIEHLQAIADAMG CCCCCCCCCEECCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHH ATTALRQVRKESTCHEMVICNQGLYHDLLNLGGIPNKSHVIGFPNVPTEYLVDFIRGFID HHHHHHHHHHHCCHHHHEEECCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCC GDGTLVWNGDRPVIQIYSGSQQLLLETGRCIELMTGIPAPNISHNRNNYYIKWSTIRAKC CCCEEEECCCCCEEEEECCCHHEEHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEE LAIWLYHNNSLMLARKAAIAQQFEQWQPKKSPERGTITEKMRLHFANYLP EEEEEEECCCEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA