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The map label for this gene is rpoC

Identifier: 159896775

GI number: 159896775

Start: 276873

End: 281504

Strand: Reverse

Name: rpoC

Synonym: Haur_0242

Alternate gene names: 159896775

Gene position: 281504-276873 (Counterclockwise)

Preceding gene: 159896776

Following gene: 159896774

Centisome position: 4.44

GC content: 52.25

Gene sequence:

>4632_bases
ATGCTCGAAATCAATGAATTCAATGCAATTCGTATCAGTCTCGCTTCACCAGAAGATATCCTGAGCTGGTCGCACGGTGA
AGTAACCAAACCAGAGACGATTAATTATAGAACTCTGCGTCCTGAACGCGATGGCTTGTTCTGTGAAAAAATCTTCGGAC
CTACCCGCGATTGGGAATGTTACTGTGGGAAGTACAAACGTGTGCGTTATAAGGGCATTGTATGCGATAAATGTGGCGTA
GAAGTCACCCGATCCAAAGTGCGACGCGATCGCATGGGTCATATCAAACTTGCCTCGCCTGTATCGCATATTTGGTTTGT
TAAAGGCACACCATCGCGTTTGGGTTTACTTTTAGATATCTCGCCACGTAATCTTGAGCGAGTGCTTTATTTTGCCTCGT
ATATTATCACCGATGTCGATGATCTGGCATTGGGCAATGTACGTGAGCAAATGAAGACCGACTTTGGCGTGCGGCGCAAA
GATCTCGAAGAAAAAATTATCGAACAACGTGGCGAAAAGGCAACCCGTTTAAGCAAAGACCTTGCGGCGATGGATAATGC
CATGGAAGGCACGTTGGAGCGAACGCATGAACAATTTGCCCGCCAACGCCAAGAAATCGAAGATGAAGCCAATGCATTGC
GCGAACACCTCGAAGAACTGATCGGCATCGACGCACTAGCCGATGAAGATATTGTTTATCGTGGCACGGTGCTGCTCGAA
GAAAACGAGCCAGTGCGCGAACGCAGCTTGGAACAGCTCGAACAACTGATCGATCAAGAGCGCGAAAAGCTTGAACAACG
CCGCGAATACGAGATTGAAAACGTGCGCTTGTTGGCCGACGGCGAGCGTGATCAACGCCAATCGGTGGCTGATGCTGAAC
AAGAACGGCTAACCACGGCCTTGATCAAACAGCTTGAAGATCTCAACAAAGAAGAAAAAGACAAGCTTGATCGCTTGGAT
GATATTCAGTTGCACCGGATTATTTCGGAAAACGAATATCGGATTCTGCGTGATTTAGCGCCCTACACCTTCAAGGCTGA
TATGGGTGCTGGCGCGGTGCGCGACATCGTATCGATGGTTGATCTCGACGAATTGTCGAACCAAATGCAAGCCGAAGTCC
AAAGCTCATCGGGTCAACGCCGCAAGAAAGCCACCAAACGGCTGCGCGTGGTTGAAGCATTCCGCAAGAGCGGCAATCGT
CCTGAATGGATGATTATGACCGTCTTGCCAGTGATTCCACCAGATTTGCGCCCGATGGTCCAGCTTGATGGTGGTCGGTT
TGCGACCTCTGACTTGAACGACCTGTATCGACGGGTGATCAACCGCAACAACCGGCTCAAGCGCTTGATGGAGTTGAACG
CTCCTGAAATCATCGTGCGCAACGAAAAACGTATGTTGCAAGAAGCGGTTGATGCCTTGATCGACAACGGTCGCCGTGGC
CGCCCAGTCAGTGGCAAGGGCAAGCATCGCCTTAAGAGCCTGAGCGATATGCTCAAAGGCAAGCAAGGCCGCTTCCGCCA
AAACCTCTTGGGTAAGCGGGTTGACTACTCAGGCCGTTCGGTGATTGTGGTCGGACCAACCCTGCAATTGCACCAATGTG
GTTTGCCCAAGAAAATGGCCTTGGAATTGTTCAAGCCATTCGTCATGCGCCGCTTGGTCGATAAAGGCTTTGCCCACAAC
ATCAAATCAGCCAAGCGCTTCGTTGAGCGGGTTCGCCCCGAAGTGTGGGATGTGCTCGAAGAAGTCATCAAAGACTACTT
GGTATTGCTGAACCGTGCGCCTTCGCTGCACCGTTTGTCGATTCAAGCCTTTGAAGCCAAGCTGATCGAAGGCTCGGCGA
TTCAATTGCACCCCTTGGTGTGTGCCGCATTCAACGCCGACTTTGACGGCGACCAAATGGCTGTGCACGTACCATTGTCG
CGCAAAGCCCAAGAAGAAGCCCGTCGTCGTATGATTTCAACCTACAACCTGTTGTCACCGGCAACTGGCGACCCAATTAT
TACGCCATCGCAAGACATCGTGTTGGGTTGTTTCTACCTGACCCAAGTTCGACCTGGGGCTAAGGGTGGCGGCAAGCGCT
TTGGGTCAATTGACGAAGCTTTGTTGGCCTACACCAATGGTGTTGTACATATTCAAGCACCTGTTTGGATTGTGATCGAA
GATTACATTCTGCCAGGCAGCGATTTGCGTGAAAAGGAATTGCCATCGTTGGATGGCGTTACGCCACGCGTTTTGATCGA
AACCAGCGTTGGGCGGATCATCTTCAACAATGCGTTGCGCTACCAAGGCGAGCCAAAAGCTGGCGAAAACGGCTATCGCT
CACCATTGCACTATCGCAACTTCTTGGTTGGCAAATCGGGATTGAAAGCCTTGATCGCCGACTGCTATCGCTTCCACTCA
CAGCGCGAGAACATCATCGCCGACGTGTATCAAGAATTAATTGAACGTTTCGGCCCTGAAACCTCGGAAGAATCGCTGTT
GCGTTTCTATGCCTCAGAACGGACGGCGCGTTTGGCCGACCGGATCAAGGCCTTGGGCTTCAAGCACGCGACCTTGGGCG
GGATGACCTTCTCGGCTTCGGACGTAGAAGTGCCTGATACCAAAGATGCAATTGTGCAAGAAACCTACAAGAAAGTGCAA
GACATCGAAAAGATGCAACGTCGTGGTTTGATTACCGACGACGAGCGCTATCGTGAAGTGGTTACGGCGTGGCTCGATGC
TACCAACCAAATCAAGGTTGAAGTTCAACGCTCATTGAATCCATTCGGGCCAGTTTCGATGATGTCAACCTCGGGTGCGC
GTGGTAACGTCGAGCAAATTCGCCAGATGGCGGGGATGCGGGGCTTGACCACTGACCCAACCGGACGGATTATCGAATTG
CCGATTACCGCCAACTTCCGCGAAGGCTTGAGCGTTATCGAGTACTTCATCTCAACCCACGGTGGTCGGAAAGGTTTGGC
TGATACCGCCTTGCGGACAGCCGACGCTGGTTACTTGACCCGCCGTTTGGTGGACGTGGCCCAAGATGTGATCGTGACGA
TCGAAGATTGTGGCACAACCGAAGGTATGTGGATTCGGGTCAGTCGCGATATTTTGGCCTCGGTCGAAGATCGGATCGTT
GGCCGCGTGACGGTGGCTCCGGTCACTAATCCCGTGACTGGTGAAGTCATTTTCGATACCGATAGCGAAATCTTAGAAGA
CGATGGCAAGCACATTGCGAATGTGCTGAAATCGTTGGACAAAGAGGCTCAAGCTGAATTTGGCATTTATGTCCGTTCGG
TACTGACCTGTAACGCCGATTATGGCATTTGTCGCAAGTGCTATGGCCGCAACCTTGCCACTGGCAAGATGGTCGAAATT
GGCGAAGCTGTCGGGATTATCGCGGCGCAATCGATTGGTGAGCCAGGGACGCAGCTGACCCTGCGGACGTTCCACACTGG
TGGTGTGGCAACTGATACCGACATCACCCAAGGTTTGCCACGGGTGCAAGAAATCTTCGAAGCCCGGATTCCGAAAGGGA
AAGCGGTGCTGGCTCAGATTGCTGGCCGTGTCCAGATTGTGCGCGAAGAAGAAGGCATTCGGCGCTTGCGGATCGTCTCT
GAGGAAGTCTATACCGACGAGCAAATGTTGCCCAAAGATTACCGCGTGGTGGTCAAAAACGGCGATGCTGTCGAAATTGG
CAACCTCTTGGCCGAAAGCAATGTCGATGGCGATGGTCGTGCACCATTGGTCGCAGGCCTAGCTGGCAACGTCTATGTTG
ACGATGATCGCTTGGTAATTCAAGCCAAAGACATCGAAGAACATGAAGAAGTGATTGCCCACGCTGCTCGTTTGCGGGTC
AAAGATGGCGATTTGGTGCAAGTTGGCCAACAAATGACCGAAGGCTCATCTGACCCTCAAGAAATGCTGCAATTGCGTGG
TCGCGAAGCAGTTCAAGAATACCTGACCAACGAAGCCCAAAAGGTCTATCGTTCGCAAGGTGTGGGGATCAACGATAAGC
ACATTGAAGTGATTGTGCGCCAAATGTTGCGACGGGTACGCATCGAAGAGCCAGGCGATACTGAACTCTTGCCAGGCGAA
TTGGTCGAACTCCACGAACTCAATCGGATCAATGCTTCGATTGTGAGCCAAGGTGGTGACCCAGCATTGGCAGTGCCAGT
TTTGTTGGGGATTACCAAGGCCTCGTTGTCAACCGACTCATTCTTGTCGGCGGCCTCGTTCCAAGAAACCACGCGCGTGC
TGACTGAAGCTGCCGTCAATGGCAAGATCGATTACCTGCGTGGCTTGAAAGAAAACGTGGTTATCGGCAAGCTGATTCCA
GCTGGTACGGGGATGGAGCAACGGCGCAAATTGGCTGAAGAAGCCGCCTTGCGGGTTGCCCAAATCACCAGCACTCCCGC
TGATCGCGAAGTTCCAGCAGCAACGCCTGCGCCAGCAGTGATGAGCGAACCCAAGCCCGCGCCACCACGCTCATTCGACG
AAGCCTTGAACGCTGTCACCAACATCGACAGTGGCAATGGACCAAAGGATGACTTGTTTGCCCAAGCCATGGCTCGTTTG
CAAGCTGAAGAAGGTCGTAAACCAACCCTGAGCGAACTCTTAGGCACCGACGAAGACGAGGAAAACGTCTAA

Upstream 100 bases:

>100_bases
AGCAATGGCAACCAAAGAAGTCGCCTGAGCGGGGAACAATTACCGAGAAGATGCGCTTGCATTTTGCAAACTATCTTCCT
TAACCGAGGAGCGTTCAACC

Downstream 100 bases:

>100_bases
GCAATAGCCCAAAAGTTCAATCAACAAAACACCGTTGGAGCCATTCCAACGGTGTTTTTGTGCTATTCCCCCAACCAGTG
ATCGCCTAGTACACTAAAAC

Product: DNA-directed RNA polymerase subunit beta'

Products: NA

Alternate protein names: RNAP subunit beta'; RNA polymerase subunit beta'; Transcriptase subunit beta'

Number of amino acids: Translated: 1543; Mature: 1543

Protein sequence:

>1543_residues
MLEINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWECYCGKYKRVRYKGIVCDKCGV
EVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDISPRNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRK
DLEEKIIEQRGEKATRLSKDLAAMDNAMEGTLERTHEQFARQRQEIEDEANALREHLEELIGIDALADEDIVYRGTVLLE
ENEPVRERSLEQLEQLIDQEREKLEQRREYEIENVRLLADGERDQRQSVADAEQERLTTALIKQLEDLNKEEKDKLDRLD
DIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMVDLDELSNQMQAEVQSSSGQRRKKATKRLRVVEAFRKSGNR
PEWMIMTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRG
RPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMALELFKPFVMRRLVDKGFAHN
IKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLS
RKAQEEARRRMISTYNLLSPATGDPIITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIE
DYILPGSDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRNFLVGKSGLKALIADCYRFHS
QRENIIADVYQELIERFGPETSEESLLRFYASERTARLADRIKALGFKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQ
DIEKMQRRGLITDDERYREVVTAWLDATNQIKVEVQRSLNPFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIEL
PITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTTEGMWIRVSRDILASVEDRIV
GRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLDKEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEI
GEAVGIIAAQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS
EEVYTDEQMLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVIQAKDIEEHEEVIAHAARLRV
KDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGE
LVELHELNRINASIVSQGGDPALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIP
AGTGMEQRRKLAEEAALRVAQITSTPADREVPAATPAPAVMSEPKPAPPRSFDEALNAVTNIDSGNGPKDDLFAQAMARL
QAEEGRKPTLSELLGTDEDEENV

Sequences:

>Translated_1543_residues
MLEINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWECYCGKYKRVRYKGIVCDKCGV
EVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDISPRNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRK
DLEEKIIEQRGEKATRLSKDLAAMDNAMEGTLERTHEQFARQRQEIEDEANALREHLEELIGIDALADEDIVYRGTVLLE
ENEPVRERSLEQLEQLIDQEREKLEQRREYEIENVRLLADGERDQRQSVADAEQERLTTALIKQLEDLNKEEKDKLDRLD
DIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMVDLDELSNQMQAEVQSSSGQRRKKATKRLRVVEAFRKSGNR
PEWMIMTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRG
RPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMALELFKPFVMRRLVDKGFAHN
IKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLS
RKAQEEARRRMISTYNLLSPATGDPIITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIE
DYILPGSDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRNFLVGKSGLKALIADCYRFHS
QRENIIADVYQELIERFGPETSEESLLRFYASERTARLADRIKALGFKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQ
DIEKMQRRGLITDDERYREVVTAWLDATNQIKVEVQRSLNPFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIEL
PITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTTEGMWIRVSRDILASVEDRIV
GRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLDKEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEI
GEAVGIIAAQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS
EEVYTDEQMLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVIQAKDIEEHEEVIAHAARLRV
KDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGE
LVELHELNRINASIVSQGGDPALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIP
AGTGMEQRRKLAEEAALRVAQITSTPADREVPAATPAPAVMSEPKPAPPRSFDEALNAVTNIDSGNGPKDDLFAQAMARL
QAEEGRKPTLSELLGTDEDEENV
>Mature_1543_residues
MLEINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWECYCGKYKRVRYKGIVCDKCGV
EVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDISPRNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRK
DLEEKIIEQRGEKATRLSKDLAAMDNAMEGTLERTHEQFARQRQEIEDEANALREHLEELIGIDALADEDIVYRGTVLLE
ENEPVRERSLEQLEQLIDQEREKLEQRREYEIENVRLLADGERDQRQSVADAEQERLTTALIKQLEDLNKEEKDKLDRLD
DIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMVDLDELSNQMQAEVQSSSGQRRKKATKRLRVVEAFRKSGNR
PEWMIMTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRG
RPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMALELFKPFVMRRLVDKGFAHN
IKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLS
RKAQEEARRRMISTYNLLSPATGDPIITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIE
DYILPGSDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRNFLVGKSGLKALIADCYRFHS
QRENIIADVYQELIERFGPETSEESLLRFYASERTARLADRIKALGFKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQ
DIEKMQRRGLITDDERYREVVTAWLDATNQIKVEVQRSLNPFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIEL
PITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTTEGMWIRVSRDILASVEDRIV
GRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLDKEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEI
GEAVGIIAAQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS
EEVYTDEQMLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVIQAKDIEEHEEVIAHAARLRV
KDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGE
LVELHELNRINASIVSQGGDPALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIP
AGTGMEQRRKLAEEAALRVAQITSTPADREVPAATPAPAVMSEPKPAPPRSFDEALNAVTNIDSGNGPKDDLFAQAMARL
QAEEGRKPTLSELLGTDEDEENV

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta' chain family

Homologues:

Organism=Homo sapiens, GI39725938, Length=1211, Percent_Identity=25.5986787778695, Blast_Score=211, Evalue=4e-54,
Organism=Homo sapiens, GI4505939, Length=307, Percent_Identity=31.9218241042345, Blast_Score=152, Evalue=3e-36,
Organism=Homo sapiens, GI103471997, Length=631, Percent_Identity=25.5150554675119, Blast_Score=111, Evalue=6e-24,
Organism=Escherichia coli, GI2367335, Length=849, Percent_Identity=49.5877502944641, Blast_Score=794, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71987878, Length=337, Percent_Identity=31.7507418397626, Blast_Score=157, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI25145495, Length=312, Percent_Identity=32.0512820512821, Blast_Score=149, Evalue=9e-36,
Organism=Saccharomyces cerevisiae, GI6324690, Length=700, Percent_Identity=25.2857142857143, Blast_Score=171, Evalue=9e-43,
Organism=Saccharomyces cerevisiae, GI6320061, Length=313, Percent_Identity=33.2268370607029, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI281360912, Length=879, Percent_Identity=27.9863481228669, Blast_Score=222, Evalue=2e-57,
Organism=Drosophila melanogaster, GI17530899, Length=308, Percent_Identity=33.4415584415584, Blast_Score=157, Evalue=7e-38,
Organism=Drosophila melanogaster, GI17647875, Length=328, Percent_Identity=28.3536585365854, Blast_Score=107, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOC_HERA2 (A9B6J1)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001543022.1
- ProteinModelPortal:   A9B6J1
- GeneID:   5732137
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_0242
- HOGENOM:   HBG621785
- OMA:   FEARVPK
- ProtClustDB:   PRK00566
- BioCyc:   HAUR316274:HAUR_0242-MONOMER
- HAMAP:   MF_01322
- InterPro:   IPR000722
- InterPro:   IPR006592
- InterPro:   IPR007080
- InterPro:   IPR007066
- InterPro:   IPR007083
- InterPro:   IPR007081
- InterPro:   IPR012754
- SMART:   SM00663
- TIGRFAMs:   TIGR02386

Pfam domain/function: PF04997 RNA_pol_Rpb1_1; PF00623 RNA_pol_Rpb1_2; PF04983 RNA_pol_Rpb1_3; PF05000 RNA_pol_Rpb1_4; PF04998 RNA_pol_Rpb1_5

EC number: =2.7.7.6

Molecular weight: Translated: 172908; Mature: 172908

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWEC
CCEECCCCEEEEEECCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCHH
YCGKYKRVRYKGIVCDKCGVEVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDI
HCCCCCEEEECCEEECCCCCHHHHHHHHHHHCCCEEEECCCCEEEEEECCHHHCEEEEEC
SPRNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRKDLEEKIIEQRGEKATRLSKD
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
LAAMDNAMEGTLERTHEQFARQRQEIEDEANALREHLEELIGIDALADEDIVYRGTVLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE
ENEPVRERSLEQLEQLIDQEREKLEQRREYEIENVRLLADGERDQRQSVADAEQERLTTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
LIKQLEDLNKEEKDKLDRLDDIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHH
DLDELSNQMQAEVQSSSGQRRKKATKRLRVVEAFRKSGNRPEWMIMTVLPVIPPDLRPMV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
QLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRG
EECCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCC
RPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMA
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCEEHHHCCCCHHHH
LELFKPFVMRRLVDKGFAHNIKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IQAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMISTYNLLSP
HHHHHHHHHCCCCEEECHHEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCC
ATGDPIITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIE
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCEEEEEE
DYILPGSDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRN
EEECCCCCCCHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
FLVGKSGLKALIADCYRFHSQRENIIADVYQELIERFGPETSEESLLRFYASERTARLAD
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RIKALGFKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQDIEKMQRRGLITDDERYREV
HHHHHCCCHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VTAWLDATNQIKVEVQRSLNPFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIEL
HHHHHCCCCEEEEEHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEE
PITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTT
ECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCC
EGMWIRVSRDILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLD
CCEEEEECHHHHHHHHHHHHCEEEEEECCCCCCCCEEECCCHHHHHCCHHHHHHHHHHHH
KEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
LRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS
EEEEECCCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHEEEECHHHHHHHHHHH
EEVYTDEQMLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVI
HHHHCCHHHCCCCEEEEEECCCEEHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCEEEE
QAKDIEEHEEVIAHAARLRVKDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQ
EECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHH
KVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGELVELHELNRINASIVSQGGD
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCC
PALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIP
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHCCEEEEECC
AGTGMEQRRKLAEEAALRVAQITSTPADREVPAATPAPAVMSEPKPAPPRSFDEALNAVT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH
NIDSGNGPKDDLFAQAMARLQAEEGRKPTLSELLGTDEDEENV
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MLEINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWEC
CCEECCCCEEEEEECCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCHH
YCGKYKRVRYKGIVCDKCGVEVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDI
HCCCCCEEEECCEEECCCCCHHHHHHHHHHHCCCEEEECCCCEEEEEECCHHHCEEEEEC
SPRNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRKDLEEKIIEQRGEKATRLSKD
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
LAAMDNAMEGTLERTHEQFARQRQEIEDEANALREHLEELIGIDALADEDIVYRGTVLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE
ENEPVRERSLEQLEQLIDQEREKLEQRREYEIENVRLLADGERDQRQSVADAEQERLTTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
LIKQLEDLNKEEKDKLDRLDDIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHH
DLDELSNQMQAEVQSSSGQRRKKATKRLRVVEAFRKSGNRPEWMIMTVLPVIPPDLRPMV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
QLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRG
EECCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCC
RPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMA
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCEEHHHCCCCHHHH
LELFKPFVMRRLVDKGFAHNIKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IQAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMISTYNLLSP
HHHHHHHHHCCCCEEECHHEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCC
ATGDPIITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIE
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCEEEEEE
DYILPGSDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRN
EEECCCCCCCHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
FLVGKSGLKALIADCYRFHSQRENIIADVYQELIERFGPETSEESLLRFYASERTARLAD
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RIKALGFKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQDIEKMQRRGLITDDERYREV
HHHHHCCCHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VTAWLDATNQIKVEVQRSLNPFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIEL
HHHHHCCCCEEEEEHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEE
PITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTT
ECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCC
EGMWIRVSRDILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLD
CCEEEEECHHHHHHHHHHHHCEEEEEECCCCCCCCEEECCCHHHHHCCHHHHHHHHHHHH
KEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
LRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS
EEEEECCCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHEEEECHHHHHHHHHHH
EEVYTDEQMLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVI
HHHHCCHHHCCCCEEEEEECCCEEHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCEEEE
QAKDIEEHEEVIAHAARLRVKDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQ
EECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHH
KVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGELVELHELNRINASIVSQGGD
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCC
PALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIP
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHCCEEEEECC
AGTGMEQRRKLAEEAALRVAQITSTPADREVPAATPAPAVMSEPKPAPPRSFDEALNAVT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH
NIDSGNGPKDDLFAQAMARLQAEEGRKPTLSELLGTDEDEENV
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA