Click here to switch to the map view.

The map label for this gene is tolB [H]

Identifier: 159896754

GI number: 159896754

Start: 257239

End: 258852

Strand: Reverse

Name: tolB [H]

Synonym: Haur_0221

Alternate gene names: 159896754

Gene position: 258852-257239 (Counterclockwise)

Preceding gene: 159896755

Following gene: 159896752

Centisome position: 4.08

GC content: 50.5

Gene sequence:

>1614_bases
ATGGCTCAATCGTGTGTCGTTTGTCGAGCCGCGCTTGCCGATGGCTCGGTCTATTGTTCTGAATGTGGCTCGCGGCAGCC
CGCCGCAGGTCAATCAACCCAAGTGTTGGGCAGCGCGGTTTTCGGTTCGCAGCCCTTACCAAGCAGCAGCGATCATGATG
ATTCGCCGTATGCGCCACGGCGGAGCGGCACGCAACCGCTAAATGATCCACCAACCCAAGTCGTCAACAACTACCAAAGC
CCTAGCTCAACCAGCAATGTTGGTGGCTTTGGGCAAGGGCCATCAACCCAACCCAATTTTCCGTTACCTCAATATACCCC
GCCGACCCCACCCAACTATGCCCAACCTACTGCAAAATCGAAGAACCTTGGGCATTGGTTGATTGGTGGTGGCTTGGCCT
TGCTGTTGATTGGCGGCGGCGCAGGGGCTTATTATTTCCTCGGCAACAACGATTCAAACAATGGCGAAAGTGGCAATGTT
GCGACTGGCCCAACCTGGACTCCGATTCCAACCAAAATCGCCGAGCCAACCGAACAAGCAGCTGGCGATCCACTGGTTGA
GCCAACCAGCGAGCCAACTGTTGAGCCAACTCAAGGCCAAAGTGATCCGGCCGATCAACCAACGCCAACCAATGAATCCA
ACGATTTGCCAACTCAAGCGGCTGGTGGTAGCGCCCCAACTGATCTCACTGGCGAGCTGATTTATCTTGATGATAGCTTT
GAATTGGTGCGCCAAACCATGAGCACTGGCTCAGTCAGCCCGCTTGATCTTGGCGGACAAGCCTATTACAACGATTTACT
GAGTTGGTCGCCTGATGGCAAAACTATGGCCTTTTTTGTACGCGACGGCGCAAAAACCAACATTTATTTAGCCGATGGTG
ATGGCAGTAATAGCCGCAGCGTGATTGAATTGCAGAATATGGCTCCCCAAAGCTTGAGCTGGTCGCCTGATAGCAGCAAA
TTTGCCTTTATCACCAGCGATATCGATTTTGAAACCAAGGAAGATCAAAATCTATATGTTTATGATCTGGCCAGTAATAA
CGAAAAACAACTGACAACCACCGGCTTGATCGATTTTGATCCGTTGAGTTGGTCGCCTGATAATCAAACGATTTTGTTTG
CTGCTGGTCAGGATGGTATCGAATTCAATGTGATTAATGCTGATGGCAGCAATCTCGCCAAACTTGCCGATGTGTTTACT
TCTGATGCATGGTGGACCAAGGATAGCAAAATCATCTACGACGATTTTTGCGATCGTTCAAACTTTGATCGTGGGGTTTG
TTTGCTCGACCCAGCCACGGGCGAGGTTGAAACATTGCAAAAAATTGGCGATTTTTATCTGAGCGGAATTTCGCCCGATG
CCAATTGGTATATGCTCGATAATTATAACGATGGCTCGTTGCTGCTGATCAATGCCGATACTGGCGATAAAGAATTAGTT
GCGCCACCAAGCAGCGGCGGTTCCTACGAAGTTCGGGTGTGGGGCAAGTGGTCACCCGATGGACGTTATGTCACCTACGA
AACGATTGGCCAAGGCACGTTTATCTATGAAATTGGCTCGGGCCAAGCCGCCGCACCTTTCGTCAATGGCTCAATTATGG
AGTGGCTGCCATAA

Upstream 100 bases:

>100_bases
TCGGGGCGTGGCGATAAAGATATTTTCACCGTTGCAGATGTATTGGGAGTGCAAATGTAGCGGAATGGCTTCGAGCGAAG
CCAATGTGTAAGGAGTAGTT

Downstream 100 bases:

>100_bases
AAATATGAAGGATGAGGGATGAAGGATGAACAGCAGGCTATAGGATCTAAGCTATAGCCTGCTGTTTAAATTTAGGTCGC
GATCCACAGAAGCATAATCA

Product: periplasmic component of the Tol biopolymer transport system-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 536

Protein sequence:

>537_residues
MAQSCVVCRAALADGSVYCSECGSRQPAAGQSTQVLGSAVFGSQPLPSSSDHDDSPYAPRRSGTQPLNDPPTQVVNNYQS
PSSTSNVGGFGQGPSTQPNFPLPQYTPPTPPNYAQPTAKSKNLGHWLIGGGLALLLIGGGAGAYYFLGNNDSNNGESGNV
ATGPTWTPIPTKIAEPTEQAAGDPLVEPTSEPTVEPTQGQSDPADQPTPTNESNDLPTQAAGGSAPTDLTGELIYLDDSF
ELVRQTMSTGSVSPLDLGGQAYYNDLLSWSPDGKTMAFFVRDGAKTNIYLADGDGSNSRSVIELQNMAPQSLSWSPDSSK
FAFITSDIDFETKEDQNLYVYDLASNNEKQLTTTGLIDFDPLSWSPDNQTILFAAGQDGIEFNVINADGSNLAKLADVFT
SDAWWTKDSKIIYDDFCDRSNFDRGVCLLDPATGEVETLQKIGDFYLSGISPDANWYMLDNYNDGSLLLINADTGDKELV
APPSSGGSYEVRVWGKWSPDGRYVTYETIGQGTFIYEIGSGQAAAPFVNGSIMEWLP

Sequences:

>Translated_537_residues
MAQSCVVCRAALADGSVYCSECGSRQPAAGQSTQVLGSAVFGSQPLPSSSDHDDSPYAPRRSGTQPLNDPPTQVVNNYQS
PSSTSNVGGFGQGPSTQPNFPLPQYTPPTPPNYAQPTAKSKNLGHWLIGGGLALLLIGGGAGAYYFLGNNDSNNGESGNV
ATGPTWTPIPTKIAEPTEQAAGDPLVEPTSEPTVEPTQGQSDPADQPTPTNESNDLPTQAAGGSAPTDLTGELIYLDDSF
ELVRQTMSTGSVSPLDLGGQAYYNDLLSWSPDGKTMAFFVRDGAKTNIYLADGDGSNSRSVIELQNMAPQSLSWSPDSSK
FAFITSDIDFETKEDQNLYVYDLASNNEKQLTTTGLIDFDPLSWSPDNQTILFAAGQDGIEFNVINADGSNLAKLADVFT
SDAWWTKDSKIIYDDFCDRSNFDRGVCLLDPATGEVETLQKIGDFYLSGISPDANWYMLDNYNDGSLLLINADTGDKELV
APPSSGGSYEVRVWGKWSPDGRYVTYETIGQGTFIYEIGSGQAAAPFVNGSIMEWLP
>Mature_536_residues
AQSCVVCRAALADGSVYCSECGSRQPAAGQSTQVLGSAVFGSQPLPSSSDHDDSPYAPRRSGTQPLNDPPTQVVNNYQSP
SSTSNVGGFGQGPSTQPNFPLPQYTPPTPPNYAQPTAKSKNLGHWLIGGGLALLLIGGGAGAYYFLGNNDSNNGESGNVA
TGPTWTPIPTKIAEPTEQAAGDPLVEPTSEPTVEPTQGQSDPADQPTPTNESNDLPTQAAGGSAPTDLTGELIYLDDSFE
LVRQTMSTGSVSPLDLGGQAYYNDLLSWSPDGKTMAFFVRDGAKTNIYLADGDGSNSRSVIELQNMAPQSLSWSPDSSKF
AFITSDIDFETKEDQNLYVYDLASNNEKQLTTTGLIDFDPLSWSPDNQTILFAAGQDGIEFNVINADGSNLAKLADVFTS
DAWWTKDSKIIYDDFCDRSNFDRGVCLLDPATGEVETLQKIGDFYLSGISPDANWYMLDNYNDGSLLLINADTGDKELVA
PPSSGGSYEVRVWGKWSPDGRYVTYETIGQGTFIYEIGSGQAAAPFVNGSIMEWLP

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 57289; Mature: 57158

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQSCVVCRAALADGSVYCSECGSRQPAAGQSTQVLGSAVFGSQPLPSSSDHDDSPYAPR
CCCCHHHHHHHHCCCCEEHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RSGTQPLNDPPTQVVNNYQSPSSTSNVGGFGQGPSTQPNFPLPQYTPPTPPNYAQPTAKS
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KNLGHWLIGGGLALLLIGGGAGAYYFLGNNDSNNGESGNVATGPTWTPIPTKIAEPTEQA
CCCCEEEECCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHH
AGDPLVEPTSEPTVEPTQGQSDPADQPTPTNESNDLPTQAAGGSAPTDLTGELIYLDDSF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHH
ELVRQTMSTGSVSPLDLGGQAYYNDLLSWSPDGKTMAFFVRDGAKTNIYLADGDGSNSRS
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCE
VIELQNMAPQSLSWSPDSSKFAFITSDIDFETKEDQNLYVYDLASNNEKQLTTTGLIDFD
EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECEEEEC
PLSWSPDNQTILFAAGQDGIEFNVINADGSNLAKLADVFTSDAWWTKDSKIIYDDFCDRS
CCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCEECCCCCEEEECCCCCC
NFDRGVCLLDPATGEVETLQKIGDFYLSGISPDANWYMLDNYNDGSLLLINADTGDKELV
CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEE
APPSSGGSYEVRVWGKWSPDGRYVTYETIGQGTFIYEIGSGQAAAPFVNGSIMEWLP
CCCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEECCCCCCCHHHCCC
>Mature Secondary Structure 
AQSCVVCRAALADGSVYCSECGSRQPAAGQSTQVLGSAVFGSQPLPSSSDHDDSPYAPR
CCCHHHHHHHHCCCCEEHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RSGTQPLNDPPTQVVNNYQSPSSTSNVGGFGQGPSTQPNFPLPQYTPPTPPNYAQPTAKS
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KNLGHWLIGGGLALLLIGGGAGAYYFLGNNDSNNGESGNVATGPTWTPIPTKIAEPTEQA
CCCCEEEECCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHH
AGDPLVEPTSEPTVEPTQGQSDPADQPTPTNESNDLPTQAAGGSAPTDLTGELIYLDDSF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHH
ELVRQTMSTGSVSPLDLGGQAYYNDLLSWSPDGKTMAFFVRDGAKTNIYLADGDGSNSRS
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCE
VIELQNMAPQSLSWSPDSSKFAFITSDIDFETKEDQNLYVYDLASNNEKQLTTTGLIDFD
EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECEEEEC
PLSWSPDNQTILFAAGQDGIEFNVINADGSNLAKLADVFTSDAWWTKDSKIIYDDFCDRS
CCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCEECCCCCEEEECCCCCC
NFDRGVCLLDPATGEVETLQKIGDFYLSGISPDANWYMLDNYNDGSLLLINADTGDKELV
CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEE
APPSSGGSYEVRVWGKWSPDGRYVTYETIGQGTFIYEIGSGQAAAPFVNGSIMEWLP
CCCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA