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The map label for this gene is comF [H]

Identifier: 159896698

GI number: 159896698

Start: 197673

End: 198344

Strand: Direct

Name: comF [H]

Synonym: Haur_0165

Alternate gene names: 159896698

Gene position: 197673-198344 (Clockwise)

Preceding gene: 159896697

Following gene: 159896700

Centisome position: 3.11

GC content: 51.34

Gene sequence:

>672_bases
ATGATCAACCGTTTATGGAATAGCTTGCTTGATCTCGTTTACCCGCCACGCTGCTATAGCTGTGGCAAGGCTGGCACGCA
ATTTTGCCCCGCTTGCTTTGCCGAATGTATTCCGCTGACTCCACCCCAACGACCGCAACCTTTAGCCGCCAATTCACCAC
TGGAACGCGCTTTGGGTATTTATCCGTTTCAAGGCAGTCTACGCGCTGCAATCCATGCCTTTAAATATCAAAATGCCCAT
CCCTTAGCCCAAATTTTGGCTCCATTGTTGTTTGATTTTTGTGCGTGGAACGATGTTGTGTTGATGCCTGTGCCATTGCA
TGGCGTGCGCAAACGTGAACGTGGCTATAATCAAGCTGAATTATTGGCGCGTCATTTGGCCAAAGCTTGGCAATTACCAC
TGAGCACCGATTTGCAACGGGTACGCGCTACCGAGCATCAAGTTGGGCAGCAAGCGCAGGCTCGTGCCAGCAATGTCGCC
GGAGCATTTGCATGGCGTGGTCAACAGCCTGCCCCAAACCATGTATTGCTGATCGACGATGTGCTTACTACTGGCTCGAC
CTTTGAAGCTTGTGCTAGTGCATTAATTGCTGCTGGTAGTACAGCGGTCGAAGGTCTAGCGCTAGCCAAAGCGGTTATCA
AGCCTGCGCCACCGCTTGATTCGCCTGAATAA

Upstream 100 bases:

>100_bases
CAAGTTTGGGAACGCATGCCTCTACCCAATAATCGACAAACCGCCTAAAAGCGTAACCCGCAAGTCAACTGGCTTGCGGG
TTTTTTGATTTGGGGCTACG

Downstream 100 bases:

>100_bases
CGCTGGCCCAACGCAATAGTCGCTCGACTGCTCCTGCTGGTTGTTCAGGCAGATAGACATCGGCAATTGTCATGGCCCAT
TGTTGCAACTGCGGTCGGCG

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MINRLWNSLLDLVYPPRCYSCGKAGTQFCPACFAECIPLTPPQRPQPLAANSPLERALGIYPFQGSLRAAIHAFKYQNAH
PLAQILAPLLFDFCAWNDVVLMPVPLHGVRKRERGYNQAELLARHLAKAWQLPLSTDLQRVRATEHQVGQQAQARASNVA
GAFAWRGQQPAPNHVLLIDDVLTTGSTFEACASALIAAGSTAVEGLALAKAVIKPAPPLDSPE

Sequences:

>Translated_223_residues
MINRLWNSLLDLVYPPRCYSCGKAGTQFCPACFAECIPLTPPQRPQPLAANSPLERALGIYPFQGSLRAAIHAFKYQNAH
PLAQILAPLLFDFCAWNDVVLMPVPLHGVRKRERGYNQAELLARHLAKAWQLPLSTDLQRVRATEHQVGQQAQARASNVA
GAFAWRGQQPAPNHVLLIDDVLTTGSTFEACASALIAAGSTAVEGLALAKAVIKPAPPLDSPE
>Mature_223_residues
MINRLWNSLLDLVYPPRCYSCGKAGTQFCPACFAECIPLTPPQRPQPLAANSPLERALGIYPFQGSLRAAIHAFKYQNAH
PLAQILAPLLFDFCAWNDVVLMPVPLHGVRKRERGYNQAELLARHLAKAWQLPLSTDLQRVRATEHQVGQQAQARASNVA
GAFAWRGQQPAPNHVLLIDDVLTTGSTFEACASALIAAGSTAVEGLALAKAVIKPAPPLDSPE

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 24191; Mature: 24191

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRLWNSLLDLVYPPRCYSCGKAGTQFCPACFAECIPLTPPQRPQPLAANSPLERALGI
CHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
YPFQGSLRAAIHAFKYQNAHPLAQILAPLLFDFCAWNDVVLMPVPLHGVRKRERGYNQAE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHH
LLARHLAKAWQLPLSTDLQRVRATEHQVGQQAQARASNVAGAFAWRGQQPAPNHVLLIDD
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEHH
VLTTGSTFEACASALIAAGSTAVEGLALAKAVIKPAPPLDSPE
HHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MINRLWNSLLDLVYPPRCYSCGKAGTQFCPACFAECIPLTPPQRPQPLAANSPLERALGI
CHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
YPFQGSLRAAIHAFKYQNAHPLAQILAPLLFDFCAWNDVVLMPVPLHGVRKRERGYNQAE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHH
LLARHLAKAWQLPLSTDLQRVRATEHQVGQQAQARASNVAGAFAWRGQQPAPNHVLLIDD
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEHH
VLTTGSTFEACASALIAAGSTAVEGLALAKAVIKPAPPLDSPE
HHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]