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The map label for this gene is ctaC [H]

Identifier: 159896637

GI number: 159896637

Start: 136808

End: 137887

Strand: Direct

Name: ctaC [H]

Synonym: Haur_0104

Alternate gene names: 159896637

Gene position: 136808-137887 (Clockwise)

Preceding gene: 159896629

Following gene: 159896638

Centisome position: 2.16

GC content: 51.57

Gene sequence:

>1080_bases
ATGCCCAATCGTTCGCCTGCCAAGGCTCTGCTGCGCCCTACGGCAACCCTGTTGCTTGGAAGCGTTGTACTGGCAGCGTG
CGGTCAGAAGACCCCTCAGACGACCCTGAACCCAGCAAGCGAGAGCACCCGCGCAATTTACAATCTCTCGGAATTGTTGT
TTTGGTTGGGCGTTGTGGTCTTTTTGATCGTACAAACCTGGTTGATCGTTTCGATCATCAAGTATCGGCAAAAAGATAGT
TCGCAGATTCCCACACAGATCCATGGCAATACGAAGGTTGAAATTGCTTGGACAATCGTGCCAGCAATTATTGCGATTGT
CATTTTCGTCTTTACCTTCGACACGATTCGCAAAATCGAGTTTATGCCCGACGAAGCCGCTGGCAATACCTTAAATGTTA
AGGTTATCGGCCATCAGTGGTGGTGGGAGTTCCAGTATCCTGATATTAAGGATGCCAGCGGTAAGCCTTTGGTCACTGCT
AACGAGCTATGGATTCCATCAGGAAGCTATATCGACGTGAAAATGACCTCGGTTGACGTAATCCACGACTTCTGGATTCC
TGGCTTGGCTGGCAAGCGCGACGTGATGCCCAATCGCGAGAGTGGCTTGTGGTTTAAAGCCGATGACGTGGCCGATGGTT
CGCCAGCAGTATTTTGGGGTCAATGCGCCGAATACTGTGGTGGCCAACATGCTTATATGAAAATGCGCGTGGTTGTGGCC
AGCCCTGCCGACTTCCAAAAATGGTCAAGCGAGCAAAGCCAAGTGGCGGTTAACACCACCTTGCCCGAATCGTTTACCAA
AAATTGTATCGGTTGTCACGTGGTGCGTGGCACCAACGCCGCTGGTATTACCGGCCCCGACTTGACCCACTTCGGTGGCC
GCATGACGATTGCCGCTGGCACGACCGATAACACCCGTGAACATCTCTATGCCTGGTTAGACGACCCTGATGCAGTCAAA
CGTGGCAACATTATGACCACCGCGATCAAGGCCGATACCCTGACCGAAGCAGAAATTACCGAGTTAGTCGATTATCTGGA
AAGCCTCAATCCTGGCACCAGTGTTAAAGGTCAGCAGTAG

Upstream 100 bases:

>100_bases
TGATTTAGTAGTATTGGAAAGGCCAATCGTTCGACTTGGTGGCGGATGTTCGCGGTGCCAACGACGATTTGGAGAACACG
GTCTTAGCAAGGAGGCATGG

Downstream 100 bases:

>100_bases
GAGGGCCGTATGGCAACTGACGTAAGTACCCTCCATCACGCCCCAGCTAAGCAACGGCGGGGTTGGTTGGAATGGATCAC
CACTGTCGATCATAAAAAAA

Product: cytochrome c oxidase subunit II

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MPNRSPAKALLRPTATLLLGSVVLAACGQKTPQTTLNPASESTRAIYNLSELLFWLGVVVFLIVQTWLIVSIIKYRQKDS
SQIPTQIHGNTKVEIAWTIVPAIIAIVIFVFTFDTIRKIEFMPDEAAGNTLNVKVIGHQWWWEFQYPDIKDASGKPLVTA
NELWIPSGSYIDVKMTSVDVIHDFWIPGLAGKRDVMPNRESGLWFKADDVADGSPAVFWGQCAEYCGGQHAYMKMRVVVA
SPADFQKWSSEQSQVAVNTTLPESFTKNCIGCHVVRGTNAAGITGPDLTHFGGRMTIAAGTTDNTREHLYAWLDDPDAVK
RGNIMTTAIKADTLTEAEITELVDYLESLNPGTSVKGQQ

Sequences:

>Translated_359_residues
MPNRSPAKALLRPTATLLLGSVVLAACGQKTPQTTLNPASESTRAIYNLSELLFWLGVVVFLIVQTWLIVSIIKYRQKDS
SQIPTQIHGNTKVEIAWTIVPAIIAIVIFVFTFDTIRKIEFMPDEAAGNTLNVKVIGHQWWWEFQYPDIKDASGKPLVTA
NELWIPSGSYIDVKMTSVDVIHDFWIPGLAGKRDVMPNRESGLWFKADDVADGSPAVFWGQCAEYCGGQHAYMKMRVVVA
SPADFQKWSSEQSQVAVNTTLPESFTKNCIGCHVVRGTNAAGITGPDLTHFGGRMTIAAGTTDNTREHLYAWLDDPDAVK
RGNIMTTAIKADTLTEAEITELVDYLESLNPGTSVKGQQ
>Mature_358_residues
PNRSPAKALLRPTATLLLGSVVLAACGQKTPQTTLNPASESTRAIYNLSELLFWLGVVVFLIVQTWLIVSIIKYRQKDSS
QIPTQIHGNTKVEIAWTIVPAIIAIVIFVFTFDTIRKIEFMPDEAAGNTLNVKVIGHQWWWEFQYPDIKDASGKPLVTAN
ELWIPSGSYIDVKMTSVDVIHDFWIPGLAGKRDVMPNRESGLWFKADDVADGSPAVFWGQCAEYCGGQHAYMKMRVVVAS
PADFQKWSSEQSQVAVNTTLPESFTKNCIGCHVVRGTNAAGITGPDLTHFGGRMTIAAGTTDNTREHLYAWLDDPDAVKR
GNIMTTAIKADTLTEAEITELVDYLESLNPGTSVKGQQ

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI251831110, Length=159, Percent_Identity=31.4465408805031, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI1786635, Length=246, Percent_Identity=26.0162601626016, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6226540, Length=240, Percent_Identity=27.9166666666667, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR014222
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2; PF02790 COX2_TM; PF00034 Cytochrom_C [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 39546; Mature: 39414

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRSPAKALLRPTATLLLGSVVLAACGQKTPQTTLNPASESTRAIYNLSELLFWLGVVV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FLIVQTWLIVSIIKYRQKDSSQIPTQIHGNTKVEIAWTIVPAIIAIVIFVFTFDTIRKIE
HHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHEE
FMPDEAAGNTLNVKVIGHQWWWEFQYPDIKDASGKPLVTANELWIPSGSYIDVKMTSVDV
ECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEEECEEECCCCCEEEEEECHHHH
IHDFWIPGLAGKRDVMPNRESGLWFKADDVADGSPAVFWGQCAEYCGGQHAYMKMRVVVA
HHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEHHHHHHHHCCCEEEEEEEEEEE
SPADFQKWSSEQSQVAVNTTLPESFTKNCIGCHVVRGTNAAGITGPDLTHFGGRMTIAAG
CCCCHHHHCCCCCEEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCEEEEEEC
TTDNTREHLYAWLDDPDAVKRGNIMTTAIKADTLTEAEITELVDYLESLNPGTSVKGQQ
CCCCCCHHEEEEECCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PNRSPAKALLRPTATLLLGSVVLAACGQKTPQTTLNPASESTRAIYNLSELLFWLGVVV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FLIVQTWLIVSIIKYRQKDSSQIPTQIHGNTKVEIAWTIVPAIIAIVIFVFTFDTIRKIE
HHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHEE
FMPDEAAGNTLNVKVIGHQWWWEFQYPDIKDASGKPLVTANELWIPSGSYIDVKMTSVDV
ECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEEECEEECCCCCEEEEEECHHHH
IHDFWIPGLAGKRDVMPNRESGLWFKADDVADGSPAVFWGQCAEYCGGQHAYMKMRVVVA
HHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEHHHHHHHHCCCEEEEEEEEEEE
SPADFQKWSSEQSQVAVNTTLPESFTKNCIGCHVVRGTNAAGITGPDLTHFGGRMTIAAG
CCCCHHHHCCCCCEEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCEEEEEEC
TTDNTREHLYAWLDDPDAVKRGNIMTTAIKADTLTEAEITELVDYLESLNPGTSVKGQQ
CCCCCCHHEEEEECCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7678007 [H]