Click here to switch to the map view.

The map label for this gene is ctaD [H]

Identifier: 159896638

GI number: 159896638

Start: 137897

End: 139744

Strand: Direct

Name: ctaD [H]

Synonym: Haur_0105

Alternate gene names: 159896638

Gene position: 137897-139744 (Clockwise)

Preceding gene: 159896637

Following gene: 159896639

Centisome position: 2.17

GC content: 51.89

Gene sequence:

>1848_bases
ATGGCAACTGACGTAAGTACCCTCCATCACGCCCCAGCTAAGCAACGGCGGGGTTGGTTGGAATGGATCACCACTGTCGA
TCATAAAAAAATTGGCATCATGTATGCTGTGACTGCCTTTTTATTCTTTGTGATCGGTGGGCTTGAGGCGTTGCTCATCC
GTTTGCAGCTTGGTACGCCCCAAAATACGCTGCTGACACCCGAAGCTTATAACCAAGTCTTTACGATGCACGGCACAACC
ATGGTGTTTATGGCGATTATGCCTGTCAACGCTGGGTTTATGAACTATTTTGTGCCCTTGATGATTGGCGCAGGCGATAT
GGCCTACCCGCGCATGAACGCCATGAGCTATTGGCTCTTGTTGTTCGGCGGGATTGTCATGTATTCCAGCTTTGTGTTCG
GCGGCGGCGCTCCCGATGCTGGCTGGTTTGCTTATGCTCCACTCACCTCAACCACCTACTCGGTTACCCGAGGGATGGAT
TATTGGGTGCTAGGTTTGCAGCTGCTGGGGGTTTCCTCGCTGGCTGGCTCGGTCAACATCATCGTAACAATCATCAGGCT
ACGAGCACCTGGCATGCGCTTTAATCGGATGCCGCTGTTCGTTTGGATGAGCTTCGTTACCTCATTCTTGTTGATTTTTG
CCTTGCCAAGCATCACGGTTGGGATCACCTTGCTGTTCTTTGACCGCAACTTTGGTACCAACTTCTTCTTGCCTGCTGCT
GGCGGCGACCCACTGTTGTGGCAACATTTGTTCTGGTTCTTCGGTCACCCCGAAGTGTACATTATGATTCTGCCCGCCTT
CGGTGTGGTTTCAGAAATGTTGCCAGTTTTCTCACGCAAGCCGATTTTCGGTTACGAGTTTGTGGCCTACTCTGGGGTTG
CAATCGGGGTGTTGGGCTTCACCGTGTGGGCACACCACATGTTTGCCACCAACTTGGGCGTGATTGCCGACACCTTCTTT
GCTGCCGCTTCGATGTTGATTTCTGTCCCGACGGGGGTCAAAATCTTCAACTGGCTAGCAACCTTGTGGCGCGGTGAGTT
GCGCTTCAAAACCCCAATGCTGTTCAGCCTTGGCTTTATCGCCATGTTCGTGATCGGCGGGATTTCCGGGGTTTCGTTGG
CGGCTGCGCCGTTCGACTTACAAGTTACCGATAGCTACTTTGTGGTTGCTCACTTCCACTATGTGCTGTTTGGTGGCGCT
GTCTTTGCCTTGTTTGGTGCATCATACTATTGGTTCCCCAAAATTACTGGCAAGATGATGAGCGAACGCATCGGCAAATG
GCACTTCTGGATTTTAATGCTGGGCTTTAATTTGACCTTCTTCCCGCAACATATGCTTGGGCTGCAAGGTATGCCACGGC
GGGTCTGGACGTATCAACAAAACCAAGGCTGGGATTTCTACAACTTGCTTTCAACGATTGGGGCATTTTGTATCGCCTTG
GGTACGTTGGTCTTTATCGTCAACTTTATTATCAGCTTGCGCAAGGGCGCTCCTGCGGGCAACGACCCATGGGATGCCGC
AACCCTGGAATGGGCGACCACCTCGCCACCACCAGCCCACAACTTCGATGTGGAATACATTGTGCATAGCCGTCGCCCCT
TGTGGGATAACAAATATAGCGGCGAAGGTCGAGGCATGACGATCAATTATGATTTCCATCCCCACTTGCCACCGCCATCG
TTTGCCCCAATCATCTTCTCGTTTGGCTTGTTTGTGCTAGCTTATGGCATGCTCAACCTCGCCTCTGCGCCATTGATTGG
GATTCCATTGATCTTGGTGGCCTTGGCAATTGCCTTCGTTGGCATGAACCGCTGGGTCGGCGAAATTGCCCAAGATCCGG
TGCTGTAA

Upstream 100 bases:

>100_bases
GGCCGATACCCTGACCGAAGCAGAAATTACCGAGTTAGTCGATTATCTGGAAAGCCTCAATCCTGGCACCAGTGTTAAAG
GTCAGCAGTAGGAGGGCCGT

Downstream 100 bases:

>100_bases
ACAACCTTGCTCGGTGTCGATTGCATGATCGGCATCGAGCCCAGTTATTTGGGAGAATCTATGGCACAGGCAGTCGTGCG
CGATATCGATAAAAATGATC

Product: cytochrome c oxidase subunit I type

Products: NA

Alternate protein names: Caa-3605 subunit 1; Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I; Oxidase aa(3) subunit 1 [H]

Number of amino acids: Translated: 615; Mature: 614

Protein sequence:

>615_residues
MATDVSTLHHAPAKQRRGWLEWITTVDHKKIGIMYAVTAFLFFVIGGLEALLIRLQLGTPQNTLLTPEAYNQVFTMHGTT
MVFMAIMPVNAGFMNYFVPLMIGAGDMAYPRMNAMSYWLLLFGGIVMYSSFVFGGGAPDAGWFAYAPLTSTTYSVTRGMD
YWVLGLQLLGVSSLAGSVNIIVTIIRLRAPGMRFNRMPLFVWMSFVTSFLLIFALPSITVGITLLFFDRNFGTNFFLPAA
GGDPLLWQHLFWFFGHPEVYIMILPAFGVVSEMLPVFSRKPIFGYEFVAYSGVAIGVLGFTVWAHHMFATNLGVIADTFF
AAASMLISVPTGVKIFNWLATLWRGELRFKTPMLFSLGFIAMFVIGGISGVSLAAAPFDLQVTDSYFVVAHFHYVLFGGA
VFALFGASYYWFPKITGKMMSERIGKWHFWILMLGFNLTFFPQHMLGLQGMPRRVWTYQQNQGWDFYNLLSTIGAFCIAL
GTLVFIVNFIISLRKGAPAGNDPWDAATLEWATTSPPPAHNFDVEYIVHSRRPLWDNKYSGEGRGMTINYDFHPHLPPPS
FAPIIFSFGLFVLAYGMLNLASAPLIGIPLILVALAIAFVGMNRWVGEIAQDPVL

Sequences:

>Translated_615_residues
MATDVSTLHHAPAKQRRGWLEWITTVDHKKIGIMYAVTAFLFFVIGGLEALLIRLQLGTPQNTLLTPEAYNQVFTMHGTT
MVFMAIMPVNAGFMNYFVPLMIGAGDMAYPRMNAMSYWLLLFGGIVMYSSFVFGGGAPDAGWFAYAPLTSTTYSVTRGMD
YWVLGLQLLGVSSLAGSVNIIVTIIRLRAPGMRFNRMPLFVWMSFVTSFLLIFALPSITVGITLLFFDRNFGTNFFLPAA
GGDPLLWQHLFWFFGHPEVYIMILPAFGVVSEMLPVFSRKPIFGYEFVAYSGVAIGVLGFTVWAHHMFATNLGVIADTFF
AAASMLISVPTGVKIFNWLATLWRGELRFKTPMLFSLGFIAMFVIGGISGVSLAAAPFDLQVTDSYFVVAHFHYVLFGGA
VFALFGASYYWFPKITGKMMSERIGKWHFWILMLGFNLTFFPQHMLGLQGMPRRVWTYQQNQGWDFYNLLSTIGAFCIAL
GTLVFIVNFIISLRKGAPAGNDPWDAATLEWATTSPPPAHNFDVEYIVHSRRPLWDNKYSGEGRGMTINYDFHPHLPPPS
FAPIIFSFGLFVLAYGMLNLASAPLIGIPLILVALAIAFVGMNRWVGEIAQDPVL
>Mature_614_residues
ATDVSTLHHAPAKQRRGWLEWITTVDHKKIGIMYAVTAFLFFVIGGLEALLIRLQLGTPQNTLLTPEAYNQVFTMHGTTM
VFMAIMPVNAGFMNYFVPLMIGAGDMAYPRMNAMSYWLLLFGGIVMYSSFVFGGGAPDAGWFAYAPLTSTTYSVTRGMDY
WVLGLQLLGVSSLAGSVNIIVTIIRLRAPGMRFNRMPLFVWMSFVTSFLLIFALPSITVGITLLFFDRNFGTNFFLPAAG
GDPLLWQHLFWFFGHPEVYIMILPAFGVVSEMLPVFSRKPIFGYEFVAYSGVAIGVLGFTVWAHHMFATNLGVIADTFFA
AASMLISVPTGVKIFNWLATLWRGELRFKTPMLFSLGFIAMFVIGGISGVSLAAAPFDLQVTDSYFVVAHFHYVLFGGAV
FALFGASYYWFPKITGKMMSERIGKWHFWILMLGFNLTFFPQHMLGLQGMPRRVWTYQQNQGWDFYNLLSTIGAFCIALG
TLVFIVNFIISLRKGAPAGNDPWDAATLEWATTSPPPAHNFDVEYIVHSRRPLWDNKYSGEGRGMTINYDFHPHLPPPSF
APIIFSFGLFVLAYGMLNLASAPLIGIPLILVALAIAFVGMNRWVGEIAQDPVL

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=507, Percent_Identity=43.5897435897436, Blast_Score=395, Evalue=1e-110,
Organism=Escherichia coli, GI1786634, Length=555, Percent_Identity=41.4414414414414, Blast_Score=431, Evalue=1e-122,
Organism=Saccharomyces cerevisiae, GI6226519, Length=529, Percent_Identity=39.8865784499055, Blast_Score=399, Evalue=1e-112,
Organism=Saccharomyces cerevisiae, GI6226524, Length=322, Percent_Identity=41.9254658385093, Blast_Score=266, Evalue=9e-72,
Organism=Saccharomyces cerevisiae, GI6226523, Length=246, Percent_Identity=39.0243902439024, Blast_Score=166, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 68553; Mature: 68421

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDVSTLHHAPAKQRRGWLEWITTVDHKKIGIMYAVTAFLFFVIGGLEALLIRLQLGTP
CCCCCCHHHCCCHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
QNTLLTPEAYNQVFTMHGTTMVFMAIMPVNAGFMNYFVPLMIGAGDMAYPRMNAMSYWLL
CCCEECHHHHCCEEEECCHHEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LFGGIVMYSSFVFGGGAPDAGWFAYAPLTSTTYSVTRGMDYWVLGLQLLGVSSLAGSVNI
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
IVTIIRLRAPGMRFNRMPLFVWMSFVTSFLLIFALPSITVGITLLFFDRNFGTNFFLPAA
EEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEECC
GGDPLLWQHLFWFFGHPEVYIMILPAFGVVSEMLPVFSRKPIFGYEFVAYSGVAIGVLGF
CCCHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHH
TVWAHHMFATNLGVIADTFFAAASMLISVPTGVKIFNWLATLWRGELRFKTPMLFSLGFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHH
AMFVIGGISGVSLAAAPFDLQVTDSYFVVAHFHYVLFGGAVFALFGASYYWFPKITGKMM
HHHHHHCCCCCEEEECCCEEEECCCEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
SERIGKWHFWILMLGFNLTFFPQHMLGLQGMPRRVWTYQQNQGWDFYNLLSTIGAFCIAL
HHHCCCHHEEEHHHHCCCCCHHHHHHCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHH
GTLVFIVNFIISLRKGAPAGNDPWDAATLEWATTSPPPAHNFDVEYIVHSRRPLWDNKYS
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
GEGRGMTINYDFHPHLPPPSFAPIIFSFGLFVLAYGMLNLASAPLIGIPLILVALAIAFV
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GMNRWVGEIAQDPVL
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATDVSTLHHAPAKQRRGWLEWITTVDHKKIGIMYAVTAFLFFVIGGLEALLIRLQLGTP
CCCCCHHHCCCHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
QNTLLTPEAYNQVFTMHGTTMVFMAIMPVNAGFMNYFVPLMIGAGDMAYPRMNAMSYWLL
CCCEECHHHHCCEEEECCHHEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LFGGIVMYSSFVFGGGAPDAGWFAYAPLTSTTYSVTRGMDYWVLGLQLLGVSSLAGSVNI
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
IVTIIRLRAPGMRFNRMPLFVWMSFVTSFLLIFALPSITVGITLLFFDRNFGTNFFLPAA
EEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEECC
GGDPLLWQHLFWFFGHPEVYIMILPAFGVVSEMLPVFSRKPIFGYEFVAYSGVAIGVLGF
CCCHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHH
TVWAHHMFATNLGVIADTFFAAASMLISVPTGVKIFNWLATLWRGELRFKTPMLFSLGFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHH
AMFVIGGISGVSLAAAPFDLQVTDSYFVVAHFHYVLFGGAVFALFGASYYWFPKITGKMM
HHHHHHCCCCCEEEECCCEEEECCCEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
SERIGKWHFWILMLGFNLTFFPQHMLGLQGMPRRVWTYQQNQGWDFYNLLSTIGAFCIAL
HHHCCCHHEEEHHHHCCCCCHHHHHHCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHH
GTLVFIVNFIISLRKGAPAGNDPWDAATLEWATTSPPPAHNFDVEYIVHSRRPLWDNKYS
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
GEGRGMTINYDFHPHLPPPSFAPIIFSFGLFVLAYGMLNLASAPLIGIPLILVALAIAFV
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GMNRWVGEIAQDPVL
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1847686; 9384377 [H]