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The map label for this gene is 159896633

Identifier: 159896633

GI number: 159896633

Start: 129796

End: 131118

Strand: Reverse

Name: 159896633

Synonym: Haur_0100

Alternate gene names: NA

Gene position: 131118-129796 (Counterclockwise)

Preceding gene: 159896634

Following gene: 159896632

Centisome position: 2.07

GC content: 54.8

Gene sequence:

>1323_bases
ATGACCCGACCTGCCACCCAAGCCGAGCAGCCAGAGCAAGAACAATGGCTGCTCGACGAGGCAAGTTTGCTCGATGCAAG
CCTGCTTGATGAACCCGACGAGGATTTGCCAGAGGTTGATGCCCGTTTACAAGGCGGCTTCAAAGCCAAATTACAATTCG
CCCCGCGTCCCTATCAAACCGAGGCCGTCGCTGCTTGGACGGCCAACGAAGGACACGGGGTGATTGTGCTGCCCACTGGA
GCAGGCAAAACGATCACAGCGATGTTGGCAATTGCCAAGCTTGGGCTGCGCACGCTGATTGTCGTGCCAACGATTGAATT
ACTCTATCAATGGCGCGACACCGTGGTCCAAACCCTCGCGCTCGATCCAAAATTAGTCGGCGTGGTTGGTGATGGCCAGC
GTGAATGGCGACCAATCACCGTGATTACCTATGCTTCGGCGGCCATGCCCGATGCACCACTTGAAAATTTGGGCTTGCTC
ATTTGTGATGAAGTGCATCATTTGCCTTCACCAGCCTATAGCACGATTGCCCTGCGCAGCCGCACGCCCTATCGCCTAGG
CTTAACCGCCACACCCGAACGCAGCGATGGCTCGCATACCGCGCTTGATCGCTTGGTTGGCAAAGTGGTTTATCAGCGTG
CGCCTGCCGATTTAGCCGAAGAAGGCCATATCGCCAAGTTTCGCGAAAAACGGATTTTGGTCGATCTAACTGCCGATGAG
TTGGTGCGCTACGAAACCTTGATGACCACATGGCGCTGGTTTTTGGCCAAACATCGGCATAAATTGGCCAGCGGCGGCGA
TTTCTTCGGCGAACTCATTCGCCGTTCTGGTAGCGACCCCCAAGCTCGCAATGCGCTCCAAGCTCAGCATCAAGCGCGAA
TGATTGCGCTCAACGCCGAGAAAAAGCTTGAGCATGTTGGCCAACTGCTCAGCCAACATCCCAACGATAAAATCATCATC
TTTTCGGAATACAACGCCTTGGTCAATACGATCAGCCGTCAGTTTGCCATACCCAGCATTACCTATCGCACAGCTGCTGA
TGAACGTAAATCAATTTTGGATGGCTTTCGGTCTGGACGCTATTCCAAGTTGGTGACGGGGCGGGTGCTGAACGAGGGCG
TTGATGTTCCCGATGCCAATGTCGCGATTGTGGTCAGTGGTTCAGCCACGGCCCGCGAATATATTCAGCGTTTGGGGCGG
GTGCTGCGCAAAAAGCCCGATGAAGCCTTGCTTTACGAGTTGGTCACGCGCAATACCAGCGAAGTTCAAACCGCCCGCCG
TCGTAAAAAAGCCGTGGCCGCCCATAATCTGCAGGCGAAGTAG

Upstream 100 bases:

>100_bases
CACCGCCAGCCAATGCTGCTCACAGTGCCCGCAAAAGCAACATCATCTACACCCAACCAACCTTATGGGAGTATGGGCAA
AAAGCCGCCTAGGAGGATGC

Downstream 100 bases:

>100_bases
AACATAGAACAAAGAGCATAGAACATAACCCTTGGGATAAACCTCGGTTTTGAGCATAACAGAATAATCAAAACAATCTG
TGGCTAAAAACGTATCTTCG

Product: type III restriction protein res subunit

Products: NA

Alternate protein names: DNA Repair Helicase; Type III Restriction Res Subunit; Helicase Domain-Containing Protein; Helicase Domain Protein; ATP-Dependent DNA Helicase; DNA Repair Helicase RAD; Type III Restriction Res Subunit Family; Helicase; DNA Repair Helicase Rad; DNA Repair Protein Rad; Superfamily II DNA/RNA Helicase; DNA Helicase; DNA Repair Protein RAD; DNA/RNA Helicase; ATP-Dependent Helicase; DNA Repair Protein; DNA/RNA Helicase Superfamily II; Helicase-Like Protein; Helicase Protein; DNA Or RNA Helicase Of Superfamily II; DNA/RNA Repair Helicase; Helicase ATP-Dependent; ATP-Dependent RNA Helicase; Type III Restriction- System Subunit Res; DEAD/DEAH Family Helicase; Helicase DNA Repair; DNA Or RNA Helicase; Helicase DNA Repair Rad; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction; Restriction Endonuclease Family Protein; XPB/RAD25-Related Helicase; Helicase ATP-Dependent Intein-Containing; DEAD/DEAH Box Family Helicase; DEAD/DEAH Box Helicase Domain-Containing Protein; ATP-Dependet DEAD/DEAH Box Helicase; RNA Polymerase Sigma; DEAD/DEAH Box Helicase-Like; DNA-Helicase; Type III Restriction Protein; Nucleic Acid ATP-Dependent Helicase; DNA Or RNA Helicase Of Superfamily Protein II; DEAD/DEAH Box Helicase

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MTRPATQAEQPEQEQWLLDEASLLDASLLDEPDEDLPEVDARLQGGFKAKLQFAPRPYQTEAVAAWTANEGHGVIVLPTG
AGKTITAMLAIAKLGLRTLIVVPTIELLYQWRDTVVQTLALDPKLVGVVGDGQREWRPITVITYASAAMPDAPLENLGLL
ICDEVHHLPSPAYSTIALRSRTPYRLGLTATPERSDGSHTALDRLVGKVVYQRAPADLAEEGHIAKFREKRILVDLTADE
LVRYETLMTTWRWFLAKHRHKLASGGDFFGELIRRSGSDPQARNALQAQHQARMIALNAEKKLEHVGQLLSQHPNDKIII
FSEYNALVNTISRQFAIPSITYRTAADERKSILDGFRSGRYSKLVTGRVLNEGVDVPDANVAIVVSGSATAREYIQRLGR
VLRKKPDEALLYELVTRNTSEVQTARRRKKAVAAHNLQAK

Sequences:

>Translated_440_residues
MTRPATQAEQPEQEQWLLDEASLLDASLLDEPDEDLPEVDARLQGGFKAKLQFAPRPYQTEAVAAWTANEGHGVIVLPTG
AGKTITAMLAIAKLGLRTLIVVPTIELLYQWRDTVVQTLALDPKLVGVVGDGQREWRPITVITYASAAMPDAPLENLGLL
ICDEVHHLPSPAYSTIALRSRTPYRLGLTATPERSDGSHTALDRLVGKVVYQRAPADLAEEGHIAKFREKRILVDLTADE
LVRYETLMTTWRWFLAKHRHKLASGGDFFGELIRRSGSDPQARNALQAQHQARMIALNAEKKLEHVGQLLSQHPNDKIII
FSEYNALVNTISRQFAIPSITYRTAADERKSILDGFRSGRYSKLVTGRVLNEGVDVPDANVAIVVSGSATAREYIQRLGR
VLRKKPDEALLYELVTRNTSEVQTARRRKKAVAAHNLQAK
>Mature_439_residues
TRPATQAEQPEQEQWLLDEASLLDASLLDEPDEDLPEVDARLQGGFKAKLQFAPRPYQTEAVAAWTANEGHGVIVLPTGA
GKTITAMLAIAKLGLRTLIVVPTIELLYQWRDTVVQTLALDPKLVGVVGDGQREWRPITVITYASAAMPDAPLENLGLLI
CDEVHHLPSPAYSTIALRSRTPYRLGLTATPERSDGSHTALDRLVGKVVYQRAPADLAEEGHIAKFREKRILVDLTADEL
VRYETLMTTWRWFLAKHRHKLASGGDFFGELIRRSGSDPQARNALQAQHQARMIALNAEKKLEHVGQLLSQHPNDKIIIF
SEYNALVNTISRQFAIPSITYRTAADERKSILDGFRSGRYSKLVTGRVLNEGVDVPDANVAIVVSGSATAREYIQRLGRV
LRKKPDEALLYELVTRNTSEVQTARRRKKAVAAHNLQAK

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557563, Length=401, Percent_Identity=24.6882793017456, Blast_Score=102, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17556358, Length=407, Percent_Identity=26.5356265356265, Blast_Score=119, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322048, Length=405, Percent_Identity=25.9259259259259, Blast_Score=112, Evalue=8e-26,
Organism=Drosophila melanogaster, GI221331068, Length=411, Percent_Identity=23.6009732360097, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24662247, Length=411, Percent_Identity=23.6009732360097, Blast_Score=102, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48878; Mature: 48747

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPATQAEQPEQEQWLLDEASLLDASLLDEPDEDLPEVDARLQGGFKAKLQFAPRPYQT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCC
EAVAAWTANEGHGVIVLPTGAGKTITAMLAIAKLGLRTLIVVPTIELLYQWRDTVVQTLA
CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDPKLVGVVGDGQREWRPITVITYASAAMPDAPLENLGLLICDEVHHLPSPAYSTIALRS
CCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHCCEEEEHHHHCCCCCCHHEEEECC
RTPYRLGLTATPERSDGSHTALDRLVGKVVYQRAPADLAEEGHIAKFREKRILVDLTADE
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHCCEEEEEECHHH
LVRYETLMTTWRWFLAKHRHKLASGGDFFGELIRRSGSDPQARNALQAQHQARMIALNAE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEECHH
KKLEHVGQLLSQHPNDKIIIFSEYNALVNTISRQFAIPSITYRTAADERKSILDGFRSGR
HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCC
YSKLVTGRVLNEGVDVPDANVAIVVSGSATAREYIQRLGRVLRKKPDEALLYELVTRNTS
HHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
EVQTARRRKKAVAAHNLQAK
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TRPATQAEQPEQEQWLLDEASLLDASLLDEPDEDLPEVDARLQGGFKAKLQFAPRPYQT
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCC
EAVAAWTANEGHGVIVLPTGAGKTITAMLAIAKLGLRTLIVVPTIELLYQWRDTVVQTLA
CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDPKLVGVVGDGQREWRPITVITYASAAMPDAPLENLGLLICDEVHHLPSPAYSTIALRS
CCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHCCEEEEHHHHCCCCCCHHEEEECC
RTPYRLGLTATPERSDGSHTALDRLVGKVVYQRAPADLAEEGHIAKFREKRILVDLTADE
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHCCEEEEEECHHH
LVRYETLMTTWRWFLAKHRHKLASGGDFFGELIRRSGSDPQARNALQAQHQARMIALNAE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEECHH
KKLEHVGQLLSQHPNDKIIIFSEYNALVNTISRQFAIPSITYRTAADERKSILDGFRSGR
HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCC
YSKLVTGRVLNEGVDVPDANVAIVVSGSATAREYIQRLGRVLRKKPDEALLYELVTRNTS
HHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
EVQTARRRKKAVAAHNLQAK
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA