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The map label for this gene is ybfI [H]

Identifier: 159896624

GI number: 159896624

Start: 118259

End: 119095

Strand: Direct

Name: ybfI [H]

Synonym: Haur_0091

Alternate gene names: 159896624

Gene position: 118259-119095 (Clockwise)

Preceding gene: 159896623

Following gene: 159896625

Centisome position: 1.86

GC content: 50.66

Gene sequence:

>837_bases
ATGCAAGCGCCGCTTAATCGTGAAACCGTGCATTTTTGGCAAGATCGGGTGCTGAATAACTTGGAGTTGTTGCATGCCCA
CTATATTACCCAGCGTTTTGCTCCGCATAGCCATGAAGAATTTGCGATTGGGGTGATTGAGGCTGGTGGCCAGGCCTTTA
CCTATCAGCGGCGCTCGGAGTGGCTTATGCCTGCTGGCAGTATTGCGGTGATTAATCCGCAGGTGGTGCATACTGGCCAT
GCGGCTACGCCCCAAGGCTGGGTCTATCGTATGTTTTATCCACCAGCGCAAATCTTGCAGCAAGCTGCTAGTCAATTAGC
TGGGCGCAATCAAGCAACCCCATTTTTTCCTCAGCCAGTGATTCATGATCCATTTTTGATGCAGCGCCTGCTTCAACTTC
ATCAATTGTTGGAAGACCCCAGCACCACTGCGCTCGAACGCGAATCGCGCTTGCTCTGGACGATGGCACAACTCATTATT
CGCCATGCTCAAAGCAAACCAGCGCTTAGCGCCCAGCAACTGCACCCCAAAGCGGTAACGACGATTCGTGAATATTTGGC
GGTGCACTATGCTGATTCAATTTCGCTTGAGCAACTGGCCCAATTGGTCAATTTAAGTCCGTTTCATACACTGCGGATGT
TTCGTCAAGCAACTGGTTTGCCACCCCATGGCTACCTCATTCAATTGCGAATCAATCAAGCGAAACAGCTGTTACATACG
CAGTTGCCCTTGGCCGAGGTAGCCGTGCAAACCGGATTTAGCGACCAAAGTCATTTGAACCGTCATTTCAAGCGGGTTTT
AGGCGTTACACCACTGCAATATCGTCGCCAAGGCTAA

Upstream 100 bases:

>100_bases
AGCATTCTCCTAAACTTCGCAAAATTCAAAGCAGCGCTGAAGCCTTGTGCTCGGCGCTGTTTTGGTTAATGGTTTGAGAC
AATCAAGGAGCAGGTTGGCT

Downstream 100 bases:

>100_bases
ATTAGCAAGATCATCCAAGCAATTAATCTTGGATCAAGCTATGCTCAATTAAATCGTAGTTTACAAGCTTTGGAGCAGCG
CCATGCACTCAATTTCTGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MQAPLNRETVHFWQDRVLNNLELLHAHYITQRFAPHSHEEFAIGVIEAGGQAFTYQRRSEWLMPAGSIAVINPQVVHTGH
AATPQGWVYRMFYPPAQILQQAASQLAGRNQATPFFPQPVIHDPFLMQRLLQLHQLLEDPSTTALERESRLLWTMAQLII
RHAQSKPALSAQQLHPKAVTTIREYLAVHYADSISLEQLAQLVNLSPFHTLRMFRQATGLPPHGYLIQLRINQAKQLLHT
QLPLAEVAVQTGFSDQSHLNRHFKRVLGVTPLQYRRQG

Sequences:

>Translated_278_residues
MQAPLNRETVHFWQDRVLNNLELLHAHYITQRFAPHSHEEFAIGVIEAGGQAFTYQRRSEWLMPAGSIAVINPQVVHTGH
AATPQGWVYRMFYPPAQILQQAASQLAGRNQATPFFPQPVIHDPFLMQRLLQLHQLLEDPSTTALERESRLLWTMAQLII
RHAQSKPALSAQQLHPKAVTTIREYLAVHYADSISLEQLAQLVNLSPFHTLRMFRQATGLPPHGYLIQLRINQAKQLLHT
QLPLAEVAVQTGFSDQSHLNRHFKRVLGVTPLQYRRQG
>Mature_278_residues
MQAPLNRETVHFWQDRVLNNLELLHAHYITQRFAPHSHEEFAIGVIEAGGQAFTYQRRSEWLMPAGSIAVINPQVVHTGH
AATPQGWVYRMFYPPAQILQQAASQLAGRNQATPFFPQPVIHDPFLMQRLLQLHQLLEDPSTTALERESRLLWTMAQLII
RHAQSKPALSAQQLHPKAVTTIREYLAVHYADSISLEQLAQLVNLSPFHTLRMFRQATGLPPHGYLIQLRINQAKQLLHT
QLPLAEVAVQTGFSDQSHLNRHFKRVLGVTPLQYRRQG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=126, Percent_Identity=34.9206349206349, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31745; Mature: 31745

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAPLNRETVHFWQDRVLNNLELLHAHYITQRFAPHSHEEFAIGVIEAGGQAFTYQRRSE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEHHHHC
WLMPAGSIAVINPQVVHTGHAATPQGWVYRMFYPPAQILQQAASQLAGRNQATPFFPQPV
CCCCCCCEEEECCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC
IHDPFLMQRLLQLHQLLEDPSTTALERESRLLWTMAQLIIRHAQSKPALSAQQLHPKAVT
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHH
TIREYLAVHYADSISLEQLAQLVNLSPFHTLRMFRQATGLPPHGYLIQLRINQAKQLLHT
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHH
QLPLAEVAVQTGFSDQSHLNRHFKRVLGVTPLQYRRQG
HCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure
MQAPLNRETVHFWQDRVLNNLELLHAHYITQRFAPHSHEEFAIGVIEAGGQAFTYQRRSE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEHHHHC
WLMPAGSIAVINPQVVHTGHAATPQGWVYRMFYPPAQILQQAASQLAGRNQATPFFPQPV
CCCCCCCEEEECCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC
IHDPFLMQRLLQLHQLLEDPSTTALERESRLLWTMAQLIIRHAQSKPALSAQQLHPKAVT
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHH
TIREYLAVHYADSISLEQLAQLVNLSPFHTLRMFRQATGLPPHGYLIQLRINQAKQLLHT
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHH
QLPLAEVAVQTGFSDQSHLNRHFKRVLGVTPLQYRRQG
HCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]