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The map label for this gene is ymdB [C]

Identifier: 159041858

GI number: 159041858

Start: 1364869

End: 1365432

Strand: Reverse

Name: ymdB [C]

Synonym: Cmaq_1293

Alternate gene names: 159041858

Gene position: 1365432-1364869 (Counterclockwise)

Preceding gene: 159041859

Following gene: 159041856

Centisome position: 65.72

GC content: 46.63

Gene sequence:

>564_bases
ATGCCTAGGTTTAAGTTCCCTAATGGTGTGGTTGTTGAGTTAATGAAGGGGGATATTACTACCCTTGAGGTTGATGCCAT
AGTTAATGCCGCTAACCCGTACCTTGAACACGGTGGCGGTGTAGCTGGGGCAATTGTTAGGAGGGGTGGTTGGATGATTC
AGGAGGAGTCGAGGGAGTGGGTTAAGAAGCATGGCCCAGTACCAGTTGGTGGTGTTGCGGTCACTGGGGCTGGTAGGTTG
AAGGCAAGGTACATTATTCACACCGTTGGCCCAAGATGCGGCATTGAACCTATTGAGAAGCTTAATGATGCTGTAGTTAA
CTCATTGAGGAAGGCTGAGGAATTGAATATCGTGAGTATAGCATTCCCAGCCATTAGTACAGGGGTCTTCGGTTGCCCCT
ATGATGAGGCCGCTAGGATAATGGCCAAAGCCATAAGGCGTGAGGCACCTGGATTGAGGAGTGTCAGGTTGATAATAATA
TGTCTTTACGATGATGAGGCATTTAATGTATTCAGCGGTGTATTTAATGAGGAGCTTAAGGAATTTAAGGAATCTAAGGA
TTAA

Upstream 100 bases:

>100_bases
TACTGAAGACTTAAACCCTTAAGCCAACACTACTGCAATATTAATACCACTACCATGAATAAATTGTAATGCATTTAAGT
CAACTCACTGAAGCATCCTA

Downstream 100 bases:

>100_bases
CCGAAAAGCGGAATCCTACTCCTCTTCGGTGGTTTAGGTACAACTACCCAAAGGGCACTGGATATGAAGGCTAGTATAAG
CACTATGAGTAATGCATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MPRFKFPNGVVVELMKGDITTLEVDAIVNAANPYLEHGGGVAGAIVRRGGWMIQEESREWVKKHGPVPVGGVAVTGAGRL
KARYIIHTVGPRCGIEPIEKLNDAVVNSLRKAEELNIVSIAFPAISTGVFGCPYDEAARIMAKAIRREAPGLRSVRLIII
CLYDDEAFNVFSGVFNEELKEFKESKD

Sequences:

>Translated_187_residues
MPRFKFPNGVVVELMKGDITTLEVDAIVNAANPYLEHGGGVAGAIVRRGGWMIQEESREWVKKHGPVPVGGVAVTGAGRL
KARYIIHTVGPRCGIEPIEKLNDAVVNSLRKAEELNIVSIAFPAISTGVFGCPYDEAARIMAKAIRREAPGLRSVRLIII
CLYDDEAFNVFSGVFNEELKEFKESKD
>Mature_186_residues
PRFKFPNGVVVELMKGDITTLEVDAIVNAANPYLEHGGGVAGAIVRRGGWMIQEESREWVKKHGPVPVGGVAVTGAGRLK
ARYIIHTVGPRCGIEPIEKLNDAVVNSLRKAEELNIVSIAFPAISTGVFGCPYDEAARIMAKAIRREAPGLRSVRLIIIC
LYDDEAFNVFSGVFNEELKEFKESKD

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI226371718, Length=152, Percent_Identity=41.4473684210526, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI226371710, Length=152, Percent_Identity=41.4473684210526, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI226371706, Length=152, Percent_Identity=41.4473684210526, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI226371716, Length=152, Percent_Identity=41.4473684210526, Blast_Score=110, Evalue=8e-25,
Organism=Homo sapiens, GI226371714, Length=152, Percent_Identity=41.4473684210526, Blast_Score=110, Evalue=8e-25,
Organism=Homo sapiens, GI226371712, Length=152, Percent_Identity=41.4473684210526, Blast_Score=110, Evalue=8e-25,
Organism=Homo sapiens, GI13569840, Length=177, Percent_Identity=38.4180790960452, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=40.9356725146199, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI154813199, Length=170, Percent_Identity=35.8823529411765, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI20336746, Length=166, Percent_Identity=31.3253012048193, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI93141018, Length=169, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI93141020, Length=169, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4758496, Length=169, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI8923920, Length=169, Percent_Identity=26.6272189349112, Blast_Score=68, Evalue=4e-12,
Organism=Escherichia coli, GI1787283, Length=178, Percent_Identity=38.7640449438202, Blast_Score=107, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17538214, Length=197, Percent_Identity=35.0253807106599, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=33.1210191082803, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20436; Mature: 20305

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFKFPNGVVVELMKGDITTLEVDAIVNAANPYLEHGGGVAGAIVRRGGWMIQEESREW
CCCCCCCCCCEEEEECCCCEEEEHHHHHHCCCCHHHCCCCHHHHHHHCCCCEEEHHHHHH
VKKHGPVPVGGVAVTGAGRLKARYIIHTVGPRCGIEPIEKLNDAVVNSLRKAEELNIVSI
HHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
AFPAISTGVFGCPYDEAARIMAKAIRREAPGLRSVRLIIICLYDDEAFNVFSGVFNEELK
ECCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHH
EFKESKD
HHHHCCC
>Mature Secondary Structure 
PRFKFPNGVVVELMKGDITTLEVDAIVNAANPYLEHGGGVAGAIVRRGGWMIQEESREW
CCCCCCCCCEEEEECCCCEEEEHHHHHHCCCCHHHCCCCHHHHHHHCCCCEEEHHHHHH
VKKHGPVPVGGVAVTGAGRLKARYIIHTVGPRCGIEPIEKLNDAVVNSLRKAEELNIVSI
HHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
AFPAISTGVFGCPYDEAARIMAKAIRREAPGLRSVRLIIICLYDDEAFNVFSGVFNEELK
ECCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHH
EFKESKD
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]