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The map label for this gene is kaiC [H]

Identifier: 159041856

GI number: 159041856

Start: 1362689

End: 1363552

Strand: Reverse

Name: kaiC [H]

Synonym: Cmaq_1291

Alternate gene names: 159041856

Gene position: 1363552-1362689 (Counterclockwise)

Preceding gene: 159041858

Following gene: 159041855

Centisome position: 65.63

GC content: 45.37

Gene sequence:

>864_bases
ATGCCTATCCCCAACCATTACACCAAACGAAACAACAGCCTCAATACAATGCAACATTTAAATATCCACCAGGGTGGATT
AGCCTTAATGCTGTATTACGATATTGAACCAACAGGGATACCAGGGCTGGATGAGGTTATTGGCGGTGGCTTGATTAGAG
GTAGAACCTACCTGGTTACCGGGGAGACCGGGGTAGGTAAGACCCTATTCTCACTATCATTCCTAATCAATGGTTATAGG
CTTGGGGAACCTGGAATATATGTTTCAGTTGATGAGACTTATGAACAATTCGTTAATGGCGCATTGAGGTTTGGCTGGGA
TATTAATGCATTAACTAGGACCGGCTTCTTCAGGGTACTGGTTCCTGAAATGGATATACTAGATACCATTAGGGAGAAGG
ATCCATCAGTGGTTGCTAGAATGATGGTTGAATCCATTGCAGAGTACGCAGCCTCAATTGGCGCTAAGAGACTGGTCATA
GATCCCATTGCTCCGTTAGTTGCCATGGAGAAGGATGTACAGGTACTTAGGGAGTATATTAGGGAATTGGTTATGGGCAT
TGAGAGGAAGATCCAAGCCACGTCATTAATAACCACTGAGGTTCCCGCTGGTTCAAGGGCCATATCTAGGTATGGTGTCG
AGGAGTTCCTTGCCACAGGGGTTTTCATACTTGGGTTAGCTAGGACTAATGATGGTTTTAAGAGGTACTTATTCATTAGG
AAGATGAGGTGGCAGCCTATTCAACCAGCGGTCTACGAATTCACAATAGAGAGCGGCATGGGGGTTGTGGTTAAGGGTCC
ATTAAAGGGAGTCTACATACCCTACATGTCCCAGGCACCAATAGTGCTTGAGGAGGAGGTTTAA

Upstream 100 bases:

>100_bases
CCCTATCTTTACCCTTCCCCTCCTGCATCATAAACGTTCGGGTTACCCTAATGTTTTATAAACCTATCGCGCCAGTAATT
ATCTAATAAACCCCTTAATA

Downstream 100 bases:

>100_bases
GTGAAGATTCTTGTTACTGGTGTTGCTAAGTCAGGTAAGTCAACAATCCTAGGAATACTGTCTGAATTAGGGTATAAGGT
AATTAATGCATCAGACCTAC

Product: putative circadian clock protein, KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MPIPNHYTKRNNSLNTMQHLNIHQGGLALMLYYDIEPTGIPGLDEVIGGGLIRGRTYLVTGETGVGKTLFSLSFLINGYR
LGEPGIYVSVDETYEQFVNGALRFGWDINALTRTGFFRVLVPEMDILDTIREKDPSVVARMMVESIAEYAASIGAKRLVI
DPIAPLVAMEKDVQVLREYIRELVMGIERKIQATSLITTEVPAGSRAISRYGVEEFLATGVFILGLARTNDGFKRYLFIR
KMRWQPIQPAVYEFTIESGMGVVVKGPLKGVYIPYMSQAPIVLEEEV

Sequences:

>Translated_287_residues
MPIPNHYTKRNNSLNTMQHLNIHQGGLALMLYYDIEPTGIPGLDEVIGGGLIRGRTYLVTGETGVGKTLFSLSFLINGYR
LGEPGIYVSVDETYEQFVNGALRFGWDINALTRTGFFRVLVPEMDILDTIREKDPSVVARMMVESIAEYAASIGAKRLVI
DPIAPLVAMEKDVQVLREYIRELVMGIERKIQATSLITTEVPAGSRAISRYGVEEFLATGVFILGLARTNDGFKRYLFIR
KMRWQPIQPAVYEFTIESGMGVVVKGPLKGVYIPYMSQAPIVLEEEV
>Mature_286_residues
PIPNHYTKRNNSLNTMQHLNIHQGGLALMLYYDIEPTGIPGLDEVIGGGLIRGRTYLVTGETGVGKTLFSLSFLINGYRL
GEPGIYVSVDETYEQFVNGALRFGWDINALTRTGFFRVLVPEMDILDTIREKDPSVVARMMVESIAEYAASIGAKRLVID
PIAPLVAMEKDVQVLREYIRELVMGIERKIQATSLITTEVPAGSRAISRYGVEEFLATGVFILGLARTNDGFKRYLFIRK
MRWQPIQPAVYEFTIESGMGVVVKGPLKGVYIPYMSQAPIVLEEEV

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 32043; Mature: 31912

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS51146 KAIC ; PS00675 SIGMA54_INTERACT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPNHYTKRNNSLNTMQHLNIHQGGLALMLYYDIEPTGIPGLDEVIGGGLIRGRTYLVT
CCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHCCCEECCEEEEEE
GETGVGKTLFSLSFLINGYRLGEPGIYVSVDETYEQFVNGALRFGWDINALTRTGFFRVL
CCCCCCHHHHHHHHHHCCEEECCCCEEEEEHHHHHHHHCCHHHCCCCCHHHHHCCEEEEE
VPEMDILDTIREKDPSVVARMMVESIAEYAASIGAKRLVIDPIAPLVAMEKDVQVLREYI
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHH
RELVMGIERKIQATSLITTEVPAGSRAISRYGVEEFLATGVFILGLARTNDGFKRYLFIR
HHHHHHHHHHHHHHHEEEECCCCCHHHHHHHCHHHHHHCCCEEEEEECCCCCHHHHHHHH
KMRWQPIQPAVYEFTIESGMGVVVKGPLKGVYIPYMSQAPIVLEEEV
HHCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCEEEECCC
>Mature Secondary Structure 
PIPNHYTKRNNSLNTMQHLNIHQGGLALMLYYDIEPTGIPGLDEVIGGGLIRGRTYLVT
CCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHCCCEECCEEEEEE
GETGVGKTLFSLSFLINGYRLGEPGIYVSVDETYEQFVNGALRFGWDINALTRTGFFRVL
CCCCCCHHHHHHHHHHCCEEECCCCEEEEEHHHHHHHHCCHHHCCCCCHHHHHCCEEEEE
VPEMDILDTIREKDPSVVARMMVESIAEYAASIGAKRLVIDPIAPLVAMEKDVQVLREYI
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHH
RELVMGIERKIQATSLITTEVPAGSRAISRYGVEEFLATGVFILGLARTNDGFKRYLFIR
HHHHHHHHHHHHHHHEEEECCCCCHHHHHHHCHHHHHHCCCEEEEEECCCCCHHHHHHHH
KMRWQPIQPAVYEFTIESGMGVVVKGPLKGVYIPYMSQAPIVLEEEV
HHCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]