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The map label for this gene is hofB [C]

Identifier: 159041769

GI number: 159041769

Start: 1268692

End: 1270251

Strand: Reverse

Name: hofB [C]

Synonym: Cmaq_1204

Alternate gene names: 159041769

Gene position: 1270251-1268692 (Counterclockwise)

Preceding gene: 159041774

Following gene: 159041768

Centisome position: 61.14

GC content: 44.29

Gene sequence:

>1560_bases
ATGTCTAGCATTAGCTTAGGATTTGAGAGAATGATTGATGTTAAGGGTCAGTATAGGTTGATTGAAAGGTACCCTGTTAA
TGAGCCTTACGCCTACGTTAACATAATGGAGAACACTGAGACTGGTTCAATAATGTACTACGTTGATGAGGTCGCCTTAA
CCACAAGTGAGAAGAGGGTTTACGGTAATTTACTAAGGATAATAATGAGTGAATTACCCCCACCTGAACAGATAGGTGAC
GTTAATTCAGTTAGGCAGTTTTTAGCTAATAAGGTTAGGGAATTGATACGTAAGTACAGGAGGTATCTTAGACTATCCCC
CAATGCTCAATCAACCCTAGCCTACTACCTTGAACGTGATCTACTGGGCTTTGGCCCAATTGACCCCCTCATGAGGGATG
AGAATATTGAGGATATTTCAGCTGATGGGGTTGGGAAGCCGATATACGTTTACCATAAGGATTACGAAAGCATACCAACA
AACATAGTCCCCCTTAGTGATGAGGCTATTGATGACTTAGTCGTTAAGTTGATACATATGGCTGATAGGCATGTATCAGT
CGCAACACCAATAGTTGATGCCCAGCTTCCCGACGGCTCAAGGATTGCGGTAACCTATAGGCGTGAGGTCTCACCCAGTG
GCTCAACTTTCACCATAAGGAAGTTTAGGTCAAACCCATTCACCTTCACTGAATTGGTCACTAATGGTATGATTAGCCCC
GATATAGCTGGCTACTTCTGGACGATGATGGATTACCATAAGTCATTCATGGTGATAGGAGTAACCGGTGCCGGTAAGAC
AACGTTCCTGAACGCAATGGCAACCTTCATTAGGCCTAACATGAAGATAATAACTGTTGAGGAGGTACCCGAAGTTAAGT
TACCTCACCAGAATTGGATTAGGCTAGTTCCAAGGCTCTCCTTCGGTCCCCAGAAGACCTCTGAAATAACCATGTTTGAC
TTGGTTAAGGCAACCTTAAGGATGAGGCCTGACTACCTAATAGTGGGTGAGGTTAGGGGTGAGGAGGCCTATGTGCTTTT
CCAAGCAGTCTCAACAGGCCACGGTGGCATATCAACAATGCACGCTGAGAACTTTGATGCAGCCAAGAATAGGTTGATGA
GTCCGCCAATGAATATACCCGCAGCCTACATACCCTCAATGAATATCTTCGTAATGATTAGGAGGATAAGGATGATTAAG
GATGGTCGTGAAAGAGTCGTGAGGAGGGTTATTGAGATAGGTGAACCCGTACTGGATAATGGGGATGTTAAGTTCATAAC
AGTGTTCAAGTGGAATCCAGTACTGGATAGGCATGAATCATACCTAGATAGAAGTGTTTTAGTCAGGGATATTGCGGAGG
AGAGGGGTGTTAGGCCAAGTGATGTTATTGAGGATATTAAGACCAGGGCATCCATAGTTAGGTGGATGGTTGATAACGGT
ATTAAGGACTTCGATAAAGTGGCGAGAATGGTGGAGTTATACTATAATAGGCCTGAGCAAGTGTTATCAATGGTTAGGGA
GAAGGCAACTGCACAGCCCATTGCCCCAGCTCAGCGTTAA

Upstream 100 bases:

>100_bases
AAACGCTAAATGCTCTTAAGCACTGGGGTTTACCCAGCTGTGGATTCTAGGGTAATAGTAGTAAAATATTAATACTCCTA
TATGGAGTATTAGGTGCAGT

Downstream 100 bases:

>100_bases
GTTTAAATCCTAATTTATTGCGTTAACATTAAATGGGTGTAATAGGTGTTGTTAATTTCGGCGGCCAATATAATCATTTG
ATTAAACGTAGGTTAGAGGA

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 518

Protein sequence:

>519_residues
MSSISLGFERMIDVKGQYRLIERYPVNEPYAYVNIMENTETGSIMYYVDEVALTTSEKRVYGNLLRIIMSELPPPEQIGD
VNSVRQFLANKVRELIRKYRRYLRLSPNAQSTLAYYLERDLLGFGPIDPLMRDENIEDISADGVGKPIYVYHKDYESIPT
NIVPLSDEAIDDLVVKLIHMADRHVSVATPIVDAQLPDGSRIAVTYRREVSPSGSTFTIRKFRSNPFTFTELVTNGMISP
DIAGYFWTMMDYHKSFMVIGVTGAGKTTFLNAMATFIRPNMKIITVEEVPEVKLPHQNWIRLVPRLSFGPQKTSEITMFD
LVKATLRMRPDYLIVGEVRGEEAYVLFQAVSTGHGGISTMHAENFDAAKNRLMSPPMNIPAAYIPSMNIFVMIRRIRMIK
DGRERVVRRVIEIGEPVLDNGDVKFITVFKWNPVLDRHESYLDRSVLVRDIAEERGVRPSDVIEDIKTRASIVRWMVDNG
IKDFDKVARMVELYYNRPEQVLSMVREKATAQPIAPAQR

Sequences:

>Translated_519_residues
MSSISLGFERMIDVKGQYRLIERYPVNEPYAYVNIMENTETGSIMYYVDEVALTTSEKRVYGNLLRIIMSELPPPEQIGD
VNSVRQFLANKVRELIRKYRRYLRLSPNAQSTLAYYLERDLLGFGPIDPLMRDENIEDISADGVGKPIYVYHKDYESIPT
NIVPLSDEAIDDLVVKLIHMADRHVSVATPIVDAQLPDGSRIAVTYRREVSPSGSTFTIRKFRSNPFTFTELVTNGMISP
DIAGYFWTMMDYHKSFMVIGVTGAGKTTFLNAMATFIRPNMKIITVEEVPEVKLPHQNWIRLVPRLSFGPQKTSEITMFD
LVKATLRMRPDYLIVGEVRGEEAYVLFQAVSTGHGGISTMHAENFDAAKNRLMSPPMNIPAAYIPSMNIFVMIRRIRMIK
DGRERVVRRVIEIGEPVLDNGDVKFITVFKWNPVLDRHESYLDRSVLVRDIAEERGVRPSDVIEDIKTRASIVRWMVDNG
IKDFDKVARMVELYYNRPEQVLSMVREKATAQPIAPAQR
>Mature_518_residues
SSISLGFERMIDVKGQYRLIERYPVNEPYAYVNIMENTETGSIMYYVDEVALTTSEKRVYGNLLRIIMSELPPPEQIGDV
NSVRQFLANKVRELIRKYRRYLRLSPNAQSTLAYYLERDLLGFGPIDPLMRDENIEDISADGVGKPIYVYHKDYESIPTN
IVPLSDEAIDDLVVKLIHMADRHVSVATPIVDAQLPDGSRIAVTYRREVSPSGSTFTIRKFRSNPFTFTELVTNGMISPD
IAGYFWTMMDYHKSFMVIGVTGAGKTTFLNAMATFIRPNMKIITVEEVPEVKLPHQNWIRLVPRLSFGPQKTSEITMFDL
VKATLRMRPDYLIVGEVRGEEAYVLFQAVSTGHGGISTMHAENFDAAKNRLMSPPMNIPAAYIPSMNIFVMIRRIRMIKD
GRERVVRRVIEIGEPVLDNGDVKFITVFKWNPVLDRHESYLDRSVLVRDIAEERGVRPSDVIEDIKTRASIVRWMVDNGI
KDFDKVARMVELYYNRPEQVLSMVREKATAQPIAPAQR

Specific function: Unknown

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 59378; Mature: 59246

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSISLGFERMIDVKGQYRLIERYPVNEPYAYVNIMENTETGSIMYYVDEVALTTSEKRV
CCCCHHCHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCHHHH
YGNLLRIIMSELPPPEQIGDVNSVRQFLANKVRELIRKYRRYLRLSPNAQSTLAYYLERD
HHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHH
LLGFGPIDPLMRDENIEDISADGVGKPIYVYHKDYESIPTNIVPLSDEAIDDLVVKLIHM
HCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHH
ADRHVSVATPIVDAQLPDGSRIAVTYRREVSPSGSTFTIRKFRSNPFTFTELVTNGMISP
HCCCCEEECCEEECCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHCCCCCC
DIAGYFWTMMDYHKSFMVIGVTGAGKTTFLNAMATFIRPNMKIITVEEVPEVKLPHQNWI
CHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
RLVPRLSFGPQKTSEITMFDLVKATLRMRPDYLIVGEVRGEEAYVLFQAVSTGHGGISTM
HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEC
HAENFDAAKNRLMSPPMNIPAAYIPSMNIFVMIRRIRMIKDGRERVVRRVIEIGEPVLDN
CCCCCHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
GDVKFITVFKWNPVLDRHESYLDRSVLVRDIAEERGVRPSDVIEDIKTRASIVRWMVDNG
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
IKDFDKVARMVELYYNRPEQVLSMVREKATAQPIAPAQR
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSISLGFERMIDVKGQYRLIERYPVNEPYAYVNIMENTETGSIMYYVDEVALTTSEKRV
CCCHHCHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCHHHH
YGNLLRIIMSELPPPEQIGDVNSVRQFLANKVRELIRKYRRYLRLSPNAQSTLAYYLERD
HHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHH
LLGFGPIDPLMRDENIEDISADGVGKPIYVYHKDYESIPTNIVPLSDEAIDDLVVKLIHM
HCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHH
ADRHVSVATPIVDAQLPDGSRIAVTYRREVSPSGSTFTIRKFRSNPFTFTELVTNGMISP
HCCCCEEECCEEECCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHCCCCCC
DIAGYFWTMMDYHKSFMVIGVTGAGKTTFLNAMATFIRPNMKIITVEEVPEVKLPHQNWI
CHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
RLVPRLSFGPQKTSEITMFDLVKATLRMRPDYLIVGEVRGEEAYVLFQAVSTGHGGISTM
HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEC
HAENFDAAKNRLMSPPMNIPAAYIPSMNIFVMIRRIRMIKDGRERVVRRVIEIGEPVLDN
CCCCCHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
GDVKFITVFKWNPVLDRHESYLDRSVLVRDIAEERGVRPSDVIEDIKTRASIVRWMVDNG
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
IKDFDKVARMVELYYNRPEQVLSMVREKATAQPIAPAQR
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]