Click here to switch to the map view.

The map label for this gene is dgoD [H]

Identifier: 159041704

GI number: 159041704

Start: 1195660

End: 1196802

Strand: Reverse

Name: dgoD [H]

Synonym: Cmaq_1139

Alternate gene names: 159041704

Gene position: 1196802-1195660 (Counterclockwise)

Preceding gene: 159041705

Following gene: 159041703

Centisome position: 57.61

GC content: 43.31

Gene sequence:

>1143_bases
ATGCCTAAGTTAAACACCATTAAGTTAATACCAGTCTCAATACCGTACATTGATGATCCACCCACAGTATTTCAGGAGGC
TTGGGGTCGTCAACTATACGTGAAGGTTGAATTAGGGGACTTAATAGGCTGGGGTGAGGTGCTTGTTTACGGTAGTAATA
TCATTGACTCATACATTGGGGTGTTTAATGATGTAATAATCCCAGCGGTCACTGGTGAGGTTATTGAGAATGTGGGTGAC
GTGCATAGGCTGGTTAATAAGCTTGAGAAGCTCCTATTCACGGCAGGGTTATGTGGTGTTGTATCAGGCGCCATGGGTGG
CCTTGAGATGGCGCTCTGGGATGCTTTAGGTAAGTACCTTAATAAGCCTATTAGTGAATTACTGGGTGTTAGGATTAGGG
ATAAGGTACCGGTTTACGCCAGTTTCCCCAGGTACTCAACGGTGGATTATGTTGTTAAGGCTGTTGATAAGGCGTTAAGT
AATGGATTCAACACCGTTAAGCTTCATCAACACGTTAACGATACCGTTGACTCAATTAAGGCCATTAGGGAAAACATGGG
TTATGGTGTTAAGGTTGCCTTAGACTTAAACGCCGCCTTCAATAAACCTGAGGAGGCATTGAATTTCCTGAATAAGGTGC
ATAGGTATGAGCCTTATTGGGTTGAGGAACCAATATGGCCTCCGAATAATTATGAATTACTCACCCATGTTGCCGATAAG
TCACCGGTACCCATAGCTGCTGGGGAGAATGAGTACTACATAGGTGGTTTCAAGGAGTTGGCGCGCATTAAGTTAATGTA
TATTCAACCAGATGTATCCAAGGTGGGGGGTTTAATTAGGTTTATGGATATTATTAAGGAAGCATCAACGTTAGGTAAAC
CAGTGGCCCCTCACCATAGACCCCATAAGTCAATACTCACCCACTTATATACACTCCACGTCGCCTCAGTGGTAAGTAAT
ATAGCTATTGTTGAGTGGCCATTGTCCTGGATTAAGGATATATATAATGTGGATGTTGAGGTTAAGGATGGTGAAGTAAG
CCTATCAAGGCTCATGAACAGTGGAGTCGGGGTTAATGTGAATGAGGAGGCTTTGGGTAAATACCCGTATGTTAGCAAGT
ATTCGCCATTGGTTTTTCACTAA

Upstream 100 bases:

>100_bases
CTACGCGTTAAGGGTAATGAATGGTAGATTAACCGCAGCTGAGGCGCTTCAGCATGATGAATTCTCACCCATTAAACTAT
ACGTGAGTGCGTGAGTAATA

Downstream 100 bases:

>100_bases
TAGAGTTCACTGATGCTGATTCAATGCTTAAAAGTTCACCCTCCTCCAGCTTTAACAATGATTGATGCGGTTTACGAGTA
TTTGCTTGGCCTAGCCCTAG

Product: mandelate racemase/muconate lactonizing protein

Products: NA

Alternate protein names: GalD [H]

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MPKLNTIKLIPVSIPYIDDPPTVFQEAWGRQLYVKVELGDLIGWGEVLVYGSNIIDSYIGVFNDVIIPAVTGEVIENVGD
VHRLVNKLEKLLFTAGLCGVVSGAMGGLEMALWDALGKYLNKPISELLGVRIRDKVPVYASFPRYSTVDYVVKAVDKALS
NGFNTVKLHQHVNDTVDSIKAIRENMGYGVKVALDLNAAFNKPEEALNFLNKVHRYEPYWVEEPIWPPNNYELLTHVADK
SPVPIAAGENEYYIGGFKELARIKLMYIQPDVSKVGGLIRFMDIIKEASTLGKPVAPHHRPHKSILTHLYTLHVASVVSN
IAIVEWPLSWIKDIYNVDVEVKDGEVSLSRLMNSGVGVNVNEEALGKYPYVSKYSPLVFH

Sequences:

>Translated_380_residues
MPKLNTIKLIPVSIPYIDDPPTVFQEAWGRQLYVKVELGDLIGWGEVLVYGSNIIDSYIGVFNDVIIPAVTGEVIENVGD
VHRLVNKLEKLLFTAGLCGVVSGAMGGLEMALWDALGKYLNKPISELLGVRIRDKVPVYASFPRYSTVDYVVKAVDKALS
NGFNTVKLHQHVNDTVDSIKAIRENMGYGVKVALDLNAAFNKPEEALNFLNKVHRYEPYWVEEPIWPPNNYELLTHVADK
SPVPIAAGENEYYIGGFKELARIKLMYIQPDVSKVGGLIRFMDIIKEASTLGKPVAPHHRPHKSILTHLYTLHVASVVSN
IAIVEWPLSWIKDIYNVDVEVKDGEVSLSRLMNSGVGVNVNEEALGKYPYVSKYSPLVFH
>Mature_379_residues
PKLNTIKLIPVSIPYIDDPPTVFQEAWGRQLYVKVELGDLIGWGEVLVYGSNIIDSYIGVFNDVIIPAVTGEVIENVGDV
HRLVNKLEKLLFTAGLCGVVSGAMGGLEMALWDALGKYLNKPISELLGVRIRDKVPVYASFPRYSTVDYVVKAVDKALSN
GFNTVKLHQHVNDTVDSIKAIRENMGYGVKVALDLNAAFNKPEEALNFLNKVHRYEPYWVEEPIWPPNNYELLTHVADKS
PVPIAAGENEYYIGGFKELARIKLMYIQPDVSKVGGLIRFMDIIKEASTLGKPVAPHHRPHKSILTHLYTLHVASVVSNI
AIVEWPLSWIKDIYNVDVEVKDGEVSLSRLMNSGVGVNVNEEALGKYPYVSKYSPLVFH

Specific function: Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=286, Percent_Identity=25.8741258741259, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI226510960, Length=338, Percent_Identity=24.5562130177515, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.6 [H]

Molecular weight: Translated: 42367; Mature: 42236

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00908 MR_MLE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLNTIKLIPVSIPYIDDPPTVFQEAWGRQLYVKVELGDLIGWGEVLVYGSNIIDSYIG
CCCCCEEEEEEEECCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCHHEEECHHHHHHHHH
VFNDVIIPAVTGEVIENVGDVHRLVNKLEKLLFTAGLCGVVSGAMGGLEMALWDALGKYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
NKPISELLGVRIRDKVPVYASFPRYSTVDYVVKAVDKALSNGFNTVKLHQHVNDTVDSIK
CCHHHHHHCCEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
AIRENMGYGVKVALDLNAAFNKPEEALNFLNKVHRYEPYWVEEPIWPPNNYELLTHVADK
HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCC
SPVPIAAGENEYYIGGFKELARIKLMYIQPDVSKVGGLIRFMDIIKEASTLGKPVAPHHR
CCCCEECCCCCEEECCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PHKSILTHLYTLHVASVVSNIAIVEWPLSWIKDIYNVDVEVKDGEVSLSRLMNSGVGVNV
CHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCC
NEEALGKYPYVSKYSPLVFH
CHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKLNTIKLIPVSIPYIDDPPTVFQEAWGRQLYVKVELGDLIGWGEVLVYGSNIIDSYIG
CCCCEEEEEEEECCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCHHEEECHHHHHHHHH
VFNDVIIPAVTGEVIENVGDVHRLVNKLEKLLFTAGLCGVVSGAMGGLEMALWDALGKYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
NKPISELLGVRIRDKVPVYASFPRYSTVDYVVKAVDKALSNGFNTVKLHQHVNDTVDSIK
CCHHHHHHCCEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
AIRENMGYGVKVALDLNAAFNKPEEALNFLNKVHRYEPYWVEEPIWPPNNYELLTHVADK
HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCC
SPVPIAAGENEYYIGGFKELARIKLMYIQPDVSKVGGLIRFMDIIKEASTLGKPVAPHHR
CCCCEECCCCCEEECCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PHKSILTHLYTLHVASVVSNIAIVEWPLSWIKDIYNVDVEVKDGEVSLSRLMNSGVGVNV
CHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCC
NEEALGKYPYVSKYSPLVFH
CHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA