Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 159041628

GI number: 159041628

Start: 1108992

End: 1110221

Strand: Reverse

Name: ydcM [C]

Synonym: Cmaq_1061

Alternate gene names: 159041628

Gene position: 1110221-1108992 (Counterclockwise)

Preceding gene: 159041631

Following gene: 159041624

Centisome position: 53.44

GC content: 45.37

Gene sequence:

>1230_bases
ATGGAGACTCGAGACCGAACGCACCGTGAGGTGCGTTCCATCGATGGGGGAATCGCGACACTTAGTGTGAAGATTCGCCC
ATCGGGTCTCGGGCTCCCTCTCCTTGTTGAAAGGTACATGAATGCGAAGAGGCTTGTTCTTAAATGGTTATTTGAAAGTA
GGATAAATCCCAATGAGAAGGGGGTCTTGTCTATGGTGCACAATAACATGTATAGGGTGTTAAGGGAGAAATTTAGTTTG
AATTCAAGACTAGCGGAAGATTGCTATAGGGATGCGTTAGCACTGTATAAGGCATGGTACAATAACCCTAGGAAGGGGAG
ATACCCAGTGCTAAGGAATGTGTCATTGTGGCTAACTTCAAGATACTCCTTCAGCTTAGATCTAGAGAAAATGAAGTGTA
CGATACTGGGTAAGCATGTGGAGGTTACTGGTTACCCGCATAACATAGGCTTCTATAGGGGATGGTTTGTTAAGGAGGCT
AGACTGGTTAAGAGGAGTGGGGAGTGGTTTCTGAAGGTAATTGTGAGCAAGGAAAAGAAGAGGAGGGGTAGGAGGGGGGA
AGGAGATGGTTTTACCCCAACTGGTTTAGTGGCTGTGGATATTAATATGAGTGGGGTTGTTGTGGGTAGTGATGATGAGC
ATTACGTGAGGATTCCCACTAGGCTAGAGGATGCTCACCACTATAAGGCTCTGGCTGAGTTACTGCAAAGGAAGTATCCT
AAGCGGTGGAGGGAGAGTAGAAGGATTCTAAATAGGATTCGCCACTTCCATAATCATGCAGGAAACATTCTTAATGATTC
CGCAAGGAAGACTGGTAAATTGGTTGTGGATATTGCTGAGGGTATGAATGCTAACGTCATAGTACTGGAGAACTTGAATA
ATATGATTACCTGTGTGGAAAAGTTAGGGAAAGCATATAGAGACAAGTTATATCTTATGCAGTATAGAAGGATTCAATAC
TGGATTGAGTGGCAGGCATTGAAGCGTGGTCTTAAGGTCATCTACGTTAACCCCGCATATACATCAACCCAATGCCCAAA
ATGCGGTGTAGAGATGAGGGAGGTTAGGCATAGGTGGTTCAAATGCCTTAAGTGTGGTTATGAGAATGACCGTGACATCA
TTGCAATCATTAACCTCTATATACGTGGGAGGGGGTCTCTGACCCTCTCGACTGCCCCCCAAGTGAGAGATGTAAACCCG
AATCAATGGGGGGAACCTCCCACCCTTTAG

Upstream 100 bases:

>100_bases
CTCTGAGTACTGGTTATGGTTATAACACCGTGGGTGGAGGGTCTTGTTTTTAAGGTGGGTTTAATGCAATCTTTTTAACC
CAGCAGCGGTAAAGATCTTT

Downstream 100 bases:

>100_bases
GGCAGGGAGGAAATCAGTGTACTGGTTATTGTTGCCGTATAGTATACTGGTGTGGTTGTGGTGTATGTTGTTGTTACTGT
GGTTAATTGAACTGTAGTGG

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
METRDRTHREVRSIDGGIATLSVKIRPSGLGLPLLVERYMNAKRLVLKWLFESRINPNEKGVLSMVHNNMYRVLREKFSL
NSRLAEDCYRDALALYKAWYNNPRKGRYPVLRNVSLWLTSRYSFSLDLEKMKCTILGKHVEVTGYPHNIGFYRGWFVKEA
RLVKRSGEWFLKVIVSKEKKRRGRRGEGDGFTPTGLVAVDINMSGVVVGSDDEHYVRIPTRLEDAHHYKALAELLQRKYP
KRWRESRRILNRIRHFHNHAGNILNDSARKTGKLVVDIAEGMNANVIVLENLNNMITCVEKLGKAYRDKLYLMQYRRIQY
WIEWQALKRGLKVIYVNPAYTSTQCPKCGVEMREVRHRWFKCLKCGYENDRDIIAIINLYIRGRGSLTLSTAPQVRDVNP
NQWGEPPTL

Sequences:

>Translated_409_residues
METRDRTHREVRSIDGGIATLSVKIRPSGLGLPLLVERYMNAKRLVLKWLFESRINPNEKGVLSMVHNNMYRVLREKFSL
NSRLAEDCYRDALALYKAWYNNPRKGRYPVLRNVSLWLTSRYSFSLDLEKMKCTILGKHVEVTGYPHNIGFYRGWFVKEA
RLVKRSGEWFLKVIVSKEKKRRGRRGEGDGFTPTGLVAVDINMSGVVVGSDDEHYVRIPTRLEDAHHYKALAELLQRKYP
KRWRESRRILNRIRHFHNHAGNILNDSARKTGKLVVDIAEGMNANVIVLENLNNMITCVEKLGKAYRDKLYLMQYRRIQY
WIEWQALKRGLKVIYVNPAYTSTQCPKCGVEMREVRHRWFKCLKCGYENDRDIIAIINLYIRGRGSLTLSTAPQVRDVNP
NQWGEPPTL
>Mature_409_residues
METRDRTHREVRSIDGGIATLSVKIRPSGLGLPLLVERYMNAKRLVLKWLFESRINPNEKGVLSMVHNNMYRVLREKFSL
NSRLAEDCYRDALALYKAWYNNPRKGRYPVLRNVSLWLTSRYSFSLDLEKMKCTILGKHVEVTGYPHNIGFYRGWFVKEA
RLVKRSGEWFLKVIVSKEKKRRGRRGEGDGFTPTGLVAVDINMSGVVVGSDDEHYVRIPTRLEDAHHYKALAELLQRKYP
KRWRESRRILNRIRHFHNHAGNILNDSARKTGKLVVDIAEGMNANVIVLENLNNMITCVEKLGKAYRDKLYLMQYRRIQY
WIEWQALKRGLKVIYVNPAYTSTQCPKCGVEMREVRHRWFKCLKCGYENDRDIIAIINLYIRGRGSLTLSTAPQVRDVNP
NQWGEPPTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47782; Mature: 47782

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRDRTHREVRSIDGGIATLSVKIRPSGLGLPLLVERYMNAKRLVLKWLFESRINPNEK
CCCCHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCHH
GVLSMVHNNMYRVLREKFSLNSRLAEDCYRDALALYKAWYNNPRKGRYPVLRNVSLWLTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCEEEEEEE
RYSFSLDLEKMKCTILGKHVEVTGYPHNIGFYRGWFVKEARLVKRSGEWFLKVIVSKEKK
CEEEEEEHHHEEEEEEECEEEEECCCCCCCCEECHHHHHHHHHHHCCCEEHHHHHHHHHH
RRGRRGEGDGFTPTGLVAVDINMSGVVVGSDDEHYVRIPTRLEDAHHYKALAELLQRKYP
HCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHCC
KRWRESRRILNRIRHFHNHAGNILNDSARKTGKLVVDIAEGMNANVIVLENLNNMITCVE
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHH
KLGKAYRDKLYLMQYRRIQYWIEWQALKRGLKVIYVNPAYTSTQCPKCGVEMREVRHRWF
HHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
KCLKCGYENDRDIIAIINLYIRGRGSLTLSTAPQVRDVNPNQWGEPPTL
HHHHCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METRDRTHREVRSIDGGIATLSVKIRPSGLGLPLLVERYMNAKRLVLKWLFESRINPNEK
CCCCHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCHH
GVLSMVHNNMYRVLREKFSLNSRLAEDCYRDALALYKAWYNNPRKGRYPVLRNVSLWLTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCEEEEEEE
RYSFSLDLEKMKCTILGKHVEVTGYPHNIGFYRGWFVKEARLVKRSGEWFLKVIVSKEKK
CEEEEEEHHHEEEEEEECEEEEECCCCCCCCEECHHHHHHHHHHHCCCEEHHHHHHHHHH
RRGRRGEGDGFTPTGLVAVDINMSGVVVGSDDEHYVRIPTRLEDAHHYKALAELLQRKYP
HCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHCC
KRWRESRRILNRIRHFHNHAGNILNDSARKTGKLVVDIAEGMNANVIVLENLNNMITCVE
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHH
KLGKAYRDKLYLMQYRRIQYWIEWQALKRGLKVIYVNPAYTSTQCPKCGVEMREVRHRWF
HHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
KCLKCGYENDRDIIAIINLYIRGRGSLTLSTAPQVRDVNPNQWGEPPTL
HHHHCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]