| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041605
Identifier: 159041605
GI number: 159041605
Start: 1089227
End: 1089724
Strand: Reverse
Name: 159041605
Synonym: Cmaq_1038
Alternate gene names: NA
Gene position: 1089724-1089227 (Counterclockwise)
Preceding gene: 159041606
Following gene: 159041604
Centisome position: 52.45
GC content: 46.39
Gene sequence:
>498_bases ATGAGTATTAAGTTTGATGTGGTGGATGTTAAGTATCCACCTGACTCAAACGTAATAATAGGGTACTCGCACTTCATAAT GACTGTTGAGGATCTTTACGAAGCCCTAGTATCCTCAGTCCCAGGCATTAAGTTTGGGTTAGCCTTCTGCGAGGCCAGTG GTAAGAGGCTTATTAGGCATGAGGGTAATGATGAGGAGCTTAGGGGCGCCGCCATTGACCTATGCTCAAGAATAGCGGCT GGGCACGTATTCGTAATATTCATTAGGAACGCCTACCCGATAAACGTCTTAAACGCTATAAAGAATGTTAAGGAGGTTAC CAGGATACTTGCAGCCACAGGTAACCCCCTCTCCATAATAGTTGCTGAAATAGCCCCTGAACGCAGGGGTGTGGTTGGTG TTGTGGATGGTTACTCACCCCTAGGGGTTGAAAAACCTGAGGATGCTAAGGAACGTAAGGAATTGGTTAGGAGGTTCGGT TACAAGATGGCTCCTTAA
Upstream 100 bases:
>100_bases GAATTATGATTAGGCTGTGGTGAATTAAAAGTTAAGGTTCATACCGGTGTTATGGCACGTGAGTGTAATGCTTAAATCCC TTAATTAGTTAAAGGTTAAT
Downstream 100 bases:
>100_bases CCGGTGATTAAACTGAACTGTGATGATGCCTACTGGGATTTAAGGAATAGGCTTGAGGTGGCTTGTGGACCATTATCAAT GTTTAGGAGAATAATGGGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSIKFDVVDVKYPPDSNVIIGYSHFIMTVEDLYEALVSSVPGIKFGLAFCEASGKRLIRHEGNDEELRGAAIDLCSRIAA GHVFVIFIRNAYPINVLNAIKNVKEVTRILAATGNPLSIIVAEIAPERRGVVGVVDGYSPLGVEKPEDAKERKELVRRFG YKMAP
Sequences:
>Translated_165_residues MSIKFDVVDVKYPPDSNVIIGYSHFIMTVEDLYEALVSSVPGIKFGLAFCEASGKRLIRHEGNDEELRGAAIDLCSRIAA GHVFVIFIRNAYPINVLNAIKNVKEVTRILAATGNPLSIIVAEIAPERRGVVGVVDGYSPLGVEKPEDAKERKELVRRFG YKMAP >Mature_164_residues SIKFDVVDVKYPPDSNVIIGYSHFIMTVEDLYEALVSSVPGIKFGLAFCEASGKRLIRHEGNDEELRGAAIDLCSRIAAG HVFVIFIRNAYPINVLNAIKNVKEVTRILAATGNPLSIIVAEIAPERRGVVGVVDGYSPLGVEKPEDAKERKELVRRFGY KMAP
Specific function: Unknown
COG id: COG1839
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18144; Mature: 18013
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKFDVVDVKYPPDSNVIIGYSHFIMTVEDLYEALVSSVPGIKFGLAFCEASGKRLIRH CCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECC EGNDEELRGAAIDLCSRIAAGHVFVIFIRNAYPINVLNAIKNVKEVTRILAATGNPLSII CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE VAEIAPERRGVVGVVDGYSPLGVEKPEDAKERKELVRRFGYKMAP EEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure SIKFDVVDVKYPPDSNVIIGYSHFIMTVEDLYEALVSSVPGIKFGLAFCEASGKRLIRH CEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECC EGNDEELRGAAIDLCSRIAAGHVFVIFIRNAYPINVLNAIKNVKEVTRILAATGNPLSII CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE VAEIAPERRGVVGVVDGYSPLGVEKPEDAKERKELVRRFGYKMAP EEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA