| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is pheT [H]
Identifier: 159041186
GI number: 159041186
Start: 639666
End: 641309
Strand: Reverse
Name: pheT [H]
Synonym: Cmaq_0607
Alternate gene names: 159041186
Gene position: 641309-639666 (Counterclockwise)
Preceding gene: 159041187
Following gene: 159041185
Centisome position: 30.87
GC content: 42.7
Gene sequence:
>1644_bases GTGCCGACTATTGAAGTCTCCTTAAGAGACCTATCCTCAATAGCGCGGGTTGATTTAACAATCAGTAGGCTGAGGGAGGT TGTTGAGGTTCTTAAAGGTGAGGTCACTGAGGTTAAGGGTGATTACGCGGCTATTGAGCTTAACTACGATAGACCTGATT TATTCTCAGCTGAGGGGCTTGGGAGGGCTATAGGCATATACCTAGGCTCAAGAAGCATCCCGCAGTACAGTATCAATGGG CCGGTCACTAGGCTGGATATAACTAAGGCGCCGGAGTATAGGCCTTACGCATACATGGCCATTGTAAGGAACGTTGAACT TAATGATGAGGCCATTAGGCAACTCTTTCAGCTTCAGGAGATACTGCATAAGGATTATGGTGGTGACAGGAGACTAGTAT CAATAGGCCTATATGACCTTGACACTGTTAAGCCACCCTTCAGTTACGTTGCCGTTAAGGAGGCTACCTATAGGCCATTA GGCTACAGTGAATCCATGACACTTACTGATGTACTTAAGTTAACTGAGAAGGGTAGGGCGTACTCAAGTTTAGTTAAACC TGGGGAGTATCCATTATTAATTGATAGTGAGGGGAGGGTGCTCTCATTCCCACCAATACTTAATGGTGAGGAAACTAAGA TAACTGAATCCACTAGGAACGTGTTAATTGATGTAACCGGTATTGAACCTGGGTTAATGAAACACGTATTAAACATTATG GTTACCTCAGTGGCTGAGAGGTCTAGGAATCCCATAATAGAGTCCATTGAGGTTACTGGAAACAGTAGTGAAATCACCCC AAGCCTTAAGTGGATTAAGGTTAACGTTAAGCTAAGGGATGTTGAGGATTTACTGGGCATAAGGCTTGAAGCCAACACGG TTATTAATGTATTAACAAGAATGGGGCTTAAAGCCTCAATCATGGGTGACTCAATTGATGTCCTTGCCCCACCCTATAGG ATTGATGTCCACAGTTACGTTGATGTGATAGAGGATGTCGCCATTGGTCTCGGTTACAATAACCTTGAACCAAACCTACC ACCATCAACTCACTTTGGCATCAAGCACCCTGTGGAGTACCTAAGCGGTGTTATTAGGGATTTATTACTTGGTATGGGGC TACAGGAGGTGGTTAATTTTAACTTAACCAGTGATGAGGTTATGAGGAATATTGGTTTAGTTAACTTCATTAAATTAAGT AATCCTAAAATTAGGGACTACTCAGCGCTCCGCAGTTCGCTTATACCGTCACTACTCCTAACAGTTAAGATTAATCAAAG GCTTGTTGGTAAACTGGAAGCCTTCGAGGTGGGTGATGTAATTGAGTTAAAGGATAATGAGGCAGTTACCAGCAGGAGGA TTGGCATATTACTCATGGGTGATGGATACACATTGACTGATGGATTATCAATAGTTAAGTCACTTCTCAGGGCATTAGGA ATGAGCATTAACCTACGCAAATGCAGTAGCAAACCCTTCATACCTGTACGTGCAGTAGAGGTGTTAGTGAATGACACAAG TATCGGATGCATTGGTGAAGTTGACCCAGAAGTACTGGTTAATCTAGGTATTGAGAAGCCTACGGTTATCGGTGAGTTAA ACATAGACTTAATGTTAAGTATACTTAAAAACATTCATCAGTAG
Upstream 100 bases:
>100_bases GTTGGCAATGGTTGTCCTTGGCGTTGATGATATTAGAACCCTCTACACTAATAATGTTAAGGAAATAGACTCAATGAAGA CTCCCATTGGGGTGATTTAA
Downstream 100 bases:
>100_bases AGTTAAACCTATGGTATTGATTATTGGACATAGGGGAGCTAGGTGCTGTGCCCCGGAGAATACAATACCATCGTTTAAGA TGGCTATTGAAGCCGGTGTG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MPTIEVSLRDLSSIARVDLTISRLREVVEVLKGEVTEVKGDYAAIELNYDRPDLFSAEGLGRAIGIYLGSRSIPQYSING PVTRLDITKAPEYRPYAYMAIVRNVELNDEAIRQLFQLQEILHKDYGGDRRLVSIGLYDLDTVKPPFSYVAVKEATYRPL GYSESMTLTDVLKLTEKGRAYSSLVKPGEYPLLIDSEGRVLSFPPILNGEETKITESTRNVLIDVTGIEPGLMKHVLNIM VTSVAERSRNPIIESIEVTGNSSEITPSLKWIKVNVKLRDVEDLLGIRLEANTVINVLTRMGLKASIMGDSIDVLAPPYR IDVHSYVDVIEDVAIGLGYNNLEPNLPPSTHFGIKHPVEYLSGVIRDLLLGMGLQEVVNFNLTSDEVMRNIGLVNFIKLS NPKIRDYSALRSSLIPSLLLTVKINQRLVGKLEAFEVGDVIELKDNEAVTSRRIGILLMGDGYTLTDGLSIVKSLLRALG MSINLRKCSSKPFIPVRAVEVLVNDTSIGCIGEVDPEVLVNLGIEKPTVIGELNIDLMLSILKNIHQ
Sequences:
>Translated_547_residues MPTIEVSLRDLSSIARVDLTISRLREVVEVLKGEVTEVKGDYAAIELNYDRPDLFSAEGLGRAIGIYLGSRSIPQYSING PVTRLDITKAPEYRPYAYMAIVRNVELNDEAIRQLFQLQEILHKDYGGDRRLVSIGLYDLDTVKPPFSYVAVKEATYRPL GYSESMTLTDVLKLTEKGRAYSSLVKPGEYPLLIDSEGRVLSFPPILNGEETKITESTRNVLIDVTGIEPGLMKHVLNIM VTSVAERSRNPIIESIEVTGNSSEITPSLKWIKVNVKLRDVEDLLGIRLEANTVINVLTRMGLKASIMGDSIDVLAPPYR IDVHSYVDVIEDVAIGLGYNNLEPNLPPSTHFGIKHPVEYLSGVIRDLLLGMGLQEVVNFNLTSDEVMRNIGLVNFIKLS NPKIRDYSALRSSLIPSLLLTVKINQRLVGKLEAFEVGDVIELKDNEAVTSRRIGILLMGDGYTLTDGLSIVKSLLRALG MSINLRKCSSKPFIPVRAVEVLVNDTSIGCIGEVDPEVLVNLGIEKPTVIGELNIDLMLSILKNIHQ >Mature_546_residues PTIEVSLRDLSSIARVDLTISRLREVVEVLKGEVTEVKGDYAAIELNYDRPDLFSAEGLGRAIGIYLGSRSIPQYSINGP VTRLDITKAPEYRPYAYMAIVRNVELNDEAIRQLFQLQEILHKDYGGDRRLVSIGLYDLDTVKPPFSYVAVKEATYRPLG YSESMTLTDVLKLTEKGRAYSSLVKPGEYPLLIDSEGRVLSFPPILNGEETKITESTRNVLIDVTGIEPGLMKHVLNIMV TSVAERSRNPIIESIEVTGNSSEITPSLKWIKVNVKLRDVEDLLGIRLEANTVINVLTRMGLKASIMGDSIDVLAPPYRI DVHSYVDVIEDVAIGLGYNNLEPNLPPSTHFGIKHPVEYLSGVIRDLLLGMGLQEVVNFNLTSDEVMRNIGLVNFIKLSN PKIRDYSALRSSLIPSLLLTVKINQRLVGKLEAFEVGDVIELKDNEAVTSRRIGILLMGDGYTLTDGLSIVKSLLRALGM SINLRKCSSKPFIPVRAVEVLVNDTSIGCIGEVDPEVLVNLGIEKPTVIGELNIDLMLSILKNIHQ
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B5 domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=545, Percent_Identity=29.9082568807339, Blast_Score=233, Evalue=4e-61, Organism=Homo sapiens, GI24308207, Length=175, Percent_Identity=29.7142857142857, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI1788006, Length=386, Percent_Identity=24.3523316062176, Blast_Score=80, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17533403, Length=551, Percent_Identity=28.6751361161525, Blast_Score=213, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6323089, Length=601, Percent_Identity=27.9534109816972, Blast_Score=211, Evalue=2e-55, Organism=Drosophila melanogaster, GI21355211, Length=588, Percent_Identity=29.5918367346939, Blast_Score=214, Evalue=2e-55,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR004531 - InterPro: IPR022918 - InterPro: IPR002319 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF01409 tRNA-synt_2d [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 60548; Mature: 60417
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTIEVSLRDLSSIARVDLTISRLREVVEVLKGEVTEVKGDYAAIELNYDRPDLFSAEGL CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCEEEEEEECCCCCCCCCCCC GRAIGIYLGSRSIPQYSINGPVTRLDITKAPEYRPYAYMAIVRNVELNDEAIRQLFQLQE CCEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH ILHKDYGGDRRLVSIGLYDLDTVKPPFSYVAVKEATYRPLGYSESMTLTDVLKLTEKGRA HHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCH YSSLVKPGEYPLLIDSEGRVLSFPPILNGEETKITESTRNVLIDVTGIEPGLMKHVLNIM HHHHCCCCCCEEEECCCCCEEECCCCCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHH VTSVAERSRNPIIESIEVTGNSSEITPSLKWIKVNVKLRDVEDLLGIRLEANTVINVLTR HHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECHHHHHCEEEEHHHHHHHHHH MGLKASIMGDSIDVLAPPYRIDVHSYVDVIEDVAIGLGYNNLEPNLPPSTHFGIKHPVEY CCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH LSGVIRDLLLGMGLQEVVNFNLTSDEVMRNIGLVNFIKLSNPKIRDYSALRSSLIPSLLL HHHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHEEE TVKINQRLVGKLEAFEVGDVIELKDNEAVTSRRIGILLMGDGYTLTDGLSIVKSLLRALG EEEECHHHHCCHHEEECCCEEEECCCCCHHCCCEEEEEEECCEEEHHHHHHHHHHHHHHC MSINLRKCSSKPFIPVRAVEVLVNDTSIGCIGEVDPEVLVNLGIEKPTVIGELNIDLMLS CEEEEEECCCCCCCCCEEEEEEEECCCCCEECCCCHHHHEECCCCCCEEEEECCHHHHHH ILKNIHQ HHHHHCC >Mature Secondary Structure PTIEVSLRDLSSIARVDLTISRLREVVEVLKGEVTEVKGDYAAIELNYDRPDLFSAEGL CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCEEEEEEECCCCCCCCCCCC GRAIGIYLGSRSIPQYSINGPVTRLDITKAPEYRPYAYMAIVRNVELNDEAIRQLFQLQE CCEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH ILHKDYGGDRRLVSIGLYDLDTVKPPFSYVAVKEATYRPLGYSESMTLTDVLKLTEKGRA HHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCH YSSLVKPGEYPLLIDSEGRVLSFPPILNGEETKITESTRNVLIDVTGIEPGLMKHVLNIM HHHHCCCCCCEEEECCCCCEEECCCCCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHH VTSVAERSRNPIIESIEVTGNSSEITPSLKWIKVNVKLRDVEDLLGIRLEANTVINVLTR HHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECHHHHHCEEEEHHHHHHHHHH MGLKASIMGDSIDVLAPPYRIDVHSYVDVIEDVAIGLGYNNLEPNLPPSTHFGIKHPVEY CCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH LSGVIRDLLLGMGLQEVVNFNLTSDEVMRNIGLVNFIKLSNPKIRDYSALRSSLIPSLLL HHHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHEEE TVKINQRLVGKLEAFEVGDVIELKDNEAVTSRRIGILLMGDGYTLTDGLSIVKSLLRALG EEEECHHHHCCHHEEECCCEEEECCCCCHHCCCEEEEEEECCEEEHHHHHHHHHHHHHHC MSINLRKCSSKPFIPVRAVEVLVNDTSIGCIGEVDPEVLVNLGIEKPTVIGELNIDLMLS CEEEEEECCCCCCCCCEEEEEEEECCCCCEECCCCHHHHEECCCCCCEEEEECCHHHHHH ILKNIHQ HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA