Click here to switch to the map view.

The map label for this gene is yhdW [H]

Identifier: 159041185

GI number: 159041185

Start: 638936

End: 639655

Strand: Reverse

Name: yhdW [H]

Synonym: Cmaq_0606

Alternate gene names: 159041185

Gene position: 639655-638936 (Counterclockwise)

Preceding gene: 159041186

Following gene: 159041184

Centisome position: 30.79

GC content: 40.14

Gene sequence:

>720_bases
ATGGTATTGATTATTGGACATAGGGGAGCTAGGTGCTGTGCCCCGGAGAATACAATACCATCGTTTAAGATGGCTATTGA
AGCCGGTGTGGATGGTATTGAATTAGATGTACATATGACTAAGGATGGTGAACCAGTTGTGATCCATGATGATACATTAG
ATAGGACGACCACAGGATCAGGCTACGTTAAGGATCACACAACCAATGAGTTGAGGAACCTTGACGCTGGAGTTAAGTTT
GATGCAAAGTGGCGTGGAGTCAGGATACCGACTCTTGATGAGGTGCTTAAGGAACTTGGTAATAAAACAAGTTTCGTAAT
TGAACTTAAACACGGTAGCGACGTATACCCTGGCATTGAGGAAAAGGTACTTAACCTTGTTAGGAAATATAATGTAAGAG
CTAAGATAGTGTCCTTTGATTTCGATGCACTTGAGAGAGTTAGGCAGCTTGATGATTCAGTGGAATTAGGATTAATATTC
GTAGGTAAGGCCAGGTGGTTTATTGATGCTGCTAGAAAGTTAAAGGCTCAATGGCTTCAAGCAGAGTATACGCTAATTAA
TGAAAGTGACGTTAATATCGCCCATGAGTCTGGTTTAAAGATTGGCGCTTGGACTGTAAACGATGTTAACATTGCTGTTA
AATTAACCAGAATGGGAGTTGATGAAGTAACTACAGATAATCCAAGTCTAATAATAGGAAGCCTTAAGTACCATAAATAA

Upstream 100 bases:

>100_bases
CTGGTTAATCTAGGTATTGAGAAGCCTACGGTTATCGGTGAGTTAAACATAGACTTAATGTTAAGTATACTTAAAAACAT
TCATCAGTAGAGTTAAACCT

Downstream 100 bases:

>100_bases
TCTTAGCGCCACTCGAGTTGAATGGAAAGGCTTATAAATTATTAATAAAATCTTAATTTCCGTGTCTTTTCGTGATGAGT
TTTTGCGTTTGTTGAGGGAG

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MVLIIGHRGARCCAPENTIPSFKMAIEAGVDGIELDVHMTKDGEPVVIHDDTLDRTTTGSGYVKDHTTNELRNLDAGVKF
DAKWRGVRIPTLDEVLKELGNKTSFVIELKHGSDVYPGIEEKVLNLVRKYNVRAKIVSFDFDALERVRQLDDSVELGLIF
VGKARWFIDAARKLKAQWLQAEYTLINESDVNIAHESGLKIGAWTVNDVNIAVKLTRMGVDEVTTDNPSLIIGSLKYHK

Sequences:

>Translated_239_residues
MVLIIGHRGARCCAPENTIPSFKMAIEAGVDGIELDVHMTKDGEPVVIHDDTLDRTTTGSGYVKDHTTNELRNLDAGVKF
DAKWRGVRIPTLDEVLKELGNKTSFVIELKHGSDVYPGIEEKVLNLVRKYNVRAKIVSFDFDALERVRQLDDSVELGLIF
VGKARWFIDAARKLKAQWLQAEYTLINESDVNIAHESGLKIGAWTVNDVNIAVKLTRMGVDEVTTDNPSLIIGSLKYHK
>Mature_239_residues
MVLIIGHRGARCCAPENTIPSFKMAIEAGVDGIELDVHMTKDGEPVVIHDDTLDRTTTGSGYVKDHTTNELRNLDAGVKF
DAKWRGVRIPTLDEVLKELGNKTSFVIELKHGSDVYPGIEEKVLNLVRKYNVRAKIVSFDFDALERVRQLDDSVELGLIF
VGKARWFIDAARKLKAQWLQAEYTLINESDVNIAHESGLKIGAWTVNDVNIAVKLTRMGVDEVTTDNPSLIIGSLKYHK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=154, Percent_Identity=33.1168831168831, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI189571657, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI33457301, Length=259, Percent_Identity=26.2548262548263, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1789858, Length=227, Percent_Identity=29.5154185022026, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788572, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542344, Length=270, Percent_Identity=29.2592592592593, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561436, Length=255, Percent_Identity=27.0588235294118, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26685; Mature: 26685

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIIGHRGARCCAPENTIPSFKMAIEAGVDGIELDVHMTKDGEPVVIHDDTLDRTTTGS
CEEEEECCCCCCCCCCCCCCHHEEEHCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCC
GYVKDHTTNELRNLDAGVKFDAKWRGVRIPTLDEVLKELGNKTSFVIELKHGSDVYPGIE
CEEECCCHHHHHCCCCCCEECCCCCCEECCCHHHHHHHHCCCEEEEEEECCCCCCCCCHH
EKVLNLVRKYNVRAKIVSFDFDALERVRQLDDSVELGLIFVGKARWFIDAARKLKAQWLQ
HHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHE
AEYTLINESDVNIAHESGLKIGAWTVNDVNIAVKLTRMGVDEVTTDNPSLIIGSLKYHK
EEEEEECCCCCEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MVLIIGHRGARCCAPENTIPSFKMAIEAGVDGIELDVHMTKDGEPVVIHDDTLDRTTTGS
CEEEEECCCCCCCCCCCCCCHHEEEHCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCC
GYVKDHTTNELRNLDAGVKFDAKWRGVRIPTLDEVLKELGNKTSFVIELKHGSDVYPGIE
CEEECCCHHHHHCCCCCCEECCCCCCEECCCHHHHHHHHCCCEEEEEEECCCCCCCCCHH
EKVLNLVRKYNVRAKIVSFDFDALERVRQLDDSVELGLIFVGKARWFIDAARKLKAQWLQ
HHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHE
AEYTLINESDVNIAHESGLKIGAWTVNDVNIAVKLTRMGVDEVTTDNPSLIIGSLKYHK
EEEEEECCCCCEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]