| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041179
Identifier: 159041179
GI number: 159041179
Start: 629291
End: 631663
Strand: Reverse
Name: 159041179
Synonym: Cmaq_0600
Alternate gene names: NA
Gene position: 631663-629291 (Counterclockwise)
Preceding gene: 159041180
Following gene: 159041173
Centisome position: 30.4
GC content: 43.11
Gene sequence:
>2373_bases ATGGGCAAACTAAGTATCTCTAGACATATATGGTTAATACTAGGTGCAATAGTAGTTATGTCAATAAGTATAGCTAGTGC TCAGTCATCATACCCCACGTACACCCTTTACTATGCAGCACCATGGTACTACGTTGTTGTCCCCCCATGGCCTGCCCCAT GGTATAACCCATTCTCATCCCTAAGCCTTTGGCCAATATGGTGGGCCAGTGATTATGCGCCATTAGCATTATGGAACCCG ACTACTAATGAGTTTTGGCCTGTTTTAGCCAGTAATTGGACTGTGTTTCCTCAGAATAAGACCTTGATAATCTACCTTAG GCATAACTTATATTGGTTTAATGGTTCAGCCACAATACCCTTCACCGCATGGGATGTTTACGCATACTTCTACATTGAGG CGAAAGCCTTTAATGCATATTCACCTTGGATTAGTCCTCAGAATGCTGATAAGGACATAATAGTGCTTAATAATTACACC ATTGAATTCCACTTCGATGTATGGTCACCCACAGAGTGGATATTCATACTTATAACCAGGCCTGAAACACCATGGCCAGT CTGGGAGAACGTAGTAAACGAGTTAAAAACAATGAATGCCAGTGAAGCCTACACCTTTGGGCAGAAGAATATAACTGAAA TGGTTGTACCATACTGGAGCCTAGGCCCATACTATGCTAGTCACGTTAGTCCACAGACAATTACTGTTCAACTAGTGCCC CAGCAGTTGTTGACTGAGTGGGGTAGCGTGTTTCCATTCCACACATGGCAATACTACCCAGAGTTAAATGCCTATATTTC ACTCTCCTCAGGAACAACTCAATTACTTGAATTAATGGCTACCCATAGTAACTTCTTCGTACTTGGGTGGACTGCACCAC CTTCAACATATCAGGTCGCCATTAAGGATGGTTACGTATTTAACCCAATGCCAGATATCTCAACCATGGGATTCTCAATA CCGGCATACTACCCATTTAATATTCCTGCTGTCAGACAAGCATTTGCATACATTATCAATAGGACTGAGGCAACCCTAGC ATGGGGACCGCCACCATACGCCTACTATCCAGTATGGATACTTGCACCAGCCCCAGCTCCTAATGTTGTCCCTGGTCTAT GGTCAACAATACCCGAAGGCATTAGGAGCATGGTTATTAATTATACTGTTAATTGGTCTTACGCCTCTCAGTTACTTGAA TCAGCTGGCTTAACCTATAAGAGCGGCCAATGGTACCTACCCAACGGAACACCACTAACACTAACACTATACACCGACGG GCGTACTGACTGGTTAACCATAAGTTCTGAAATAGCTGCACAATTAGGGAAGTTTGGAATACCAACTAAGGTCATTTCTG TTGAGGCTGCAACATATTCCACTGAGGAGACTACGTGTAAATTACCTGATAATGTTGATTTCATATATGCAGGCCTTAAT AAGGGTGGTTATGATACATTCTGGGTTTCCTTAACTTCAGCTCAATGGAATGGCCCTGCATTATTCCCAGCAGCATGGTG TATTAACGGCACCACTACGCCTTTCGCCTACCCGATTGTTCAGAGTAATCAGATTACCGGCTGGTATTGTAAACCATTAA CCACCAACCTACCTATACCGAATAATACAATTATCTGGTGCATTAACTCAACCTATGGTCTCATAAACCTAACCAATTGG GAGGATGCCATAACGGCTGCTGAGCCTGGTTCATCAACATACTATGAGTTAATTAAGGCATTCTACGCATGGTCCGAGTA CTGGGTACCAGCAATTCAAATAGGTACTGAGGCGATAGCTCAGGGTGCTGTACCTAAGTATGTTAATATGGGGTGGTTAA TGAAGTGCATACCGTTTAATGCATCTAAGTACAGCGAAGCAGCATACACGTTAGAGTATCCTCATGGAATGTCAGGAGCA TCCTTCGATACAATAGACTTAGTATTCCTAGGTGGATTCGCACCTCAAGGCGTGATGCCTCCTCTAGCTCAAGCTATTGT TAATGGTTCATTATGGACTAAGTATCCTCAGTATGCGGCATTCATTGGTTTACCTAATCCTGATCCTCAGTTGCAGGCTT GTGTAGCATCGTACTTCCATGTACCGTATACTCCAGTTACTTCAACTACAACGACTTCAACGACTACGGCCACAACAACC TCAACAACCACTGTTACTTCAACTGCCGTTGCTACTGTGACTAGTACTGCCACTGTAACATCAACAAGCACAGTAGTAAG CACAACAACCACTACGGCAGTAAGCACAGTAACAGTCACAAAACCAGTAATAAGCACAACACTAGTAATAGGAATAGTAA TCATAGTAATAGTCATAGCCATAGTAGCAGCAGTACTAGCATTAAGAAGATGA
Upstream 100 bases:
>100_bases ACCATAATGGTGGGTAAGAGCTAGTGAATACTAGTTTCATACTACACTTTTATAGTAATTTCGGAAAACTTTAAATACTA GTTCTCAGTTTCTAAAATGT
Downstream 100 bases:
>100_bases AAATGAATCAATGATTAATTAAATTAAAACTATCTTCTTTTCCCTTTATTCCCCTAAACCTATCATGCTCATTAATAGTT TAAATATTTTAAGGCCTTAT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MGKLSISRHIWLILGAIVVMSISIASAQSSYPTYTLYYAAPWYYVVVPPWPAPWYNPFSSLSLWPIWWASDYAPLALWNP TTNEFWPVLASNWTVFPQNKTLIIYLRHNLYWFNGSATIPFTAWDVYAYFYIEAKAFNAYSPWISPQNADKDIIVLNNYT IEFHFDVWSPTEWIFILITRPETPWPVWENVVNELKTMNASEAYTFGQKNITEMVVPYWSLGPYYASHVSPQTITVQLVP QQLLTEWGSVFPFHTWQYYPELNAYISLSSGTTQLLELMATHSNFFVLGWTAPPSTYQVAIKDGYVFNPMPDISTMGFSI PAYYPFNIPAVRQAFAYIINRTEATLAWGPPPYAYYPVWILAPAPAPNVVPGLWSTIPEGIRSMVINYTVNWSYASQLLE SAGLTYKSGQWYLPNGTPLTLTLYTDGRTDWLTISSEIAAQLGKFGIPTKVISVEAATYSTEETTCKLPDNVDFIYAGLN KGGYDTFWVSLTSAQWNGPALFPAAWCINGTTTPFAYPIVQSNQITGWYCKPLTTNLPIPNNTIIWCINSTYGLINLTNW EDAITAAEPGSSTYYELIKAFYAWSEYWVPAIQIGTEAIAQGAVPKYVNMGWLMKCIPFNASKYSEAAYTLEYPHGMSGA SFDTIDLVFLGGFAPQGVMPPLAQAIVNGSLWTKYPQYAAFIGLPNPDPQLQACVASYFHVPYTPVTSTTTTSTTTATTT STTTVTSTAVATVTSTATVTSTSTVVSTTTTTAVSTVTVTKPVISTTLVIGIVIIVIVIAIVAAVLALRR
Sequences:
>Translated_790_residues MGKLSISRHIWLILGAIVVMSISIASAQSSYPTYTLYYAAPWYYVVVPPWPAPWYNPFSSLSLWPIWWASDYAPLALWNP TTNEFWPVLASNWTVFPQNKTLIIYLRHNLYWFNGSATIPFTAWDVYAYFYIEAKAFNAYSPWISPQNADKDIIVLNNYT IEFHFDVWSPTEWIFILITRPETPWPVWENVVNELKTMNASEAYTFGQKNITEMVVPYWSLGPYYASHVSPQTITVQLVP QQLLTEWGSVFPFHTWQYYPELNAYISLSSGTTQLLELMATHSNFFVLGWTAPPSTYQVAIKDGYVFNPMPDISTMGFSI PAYYPFNIPAVRQAFAYIINRTEATLAWGPPPYAYYPVWILAPAPAPNVVPGLWSTIPEGIRSMVINYTVNWSYASQLLE SAGLTYKSGQWYLPNGTPLTLTLYTDGRTDWLTISSEIAAQLGKFGIPTKVISVEAATYSTEETTCKLPDNVDFIYAGLN KGGYDTFWVSLTSAQWNGPALFPAAWCINGTTTPFAYPIVQSNQITGWYCKPLTTNLPIPNNTIIWCINSTYGLINLTNW EDAITAAEPGSSTYYELIKAFYAWSEYWVPAIQIGTEAIAQGAVPKYVNMGWLMKCIPFNASKYSEAAYTLEYPHGMSGA SFDTIDLVFLGGFAPQGVMPPLAQAIVNGSLWTKYPQYAAFIGLPNPDPQLQACVASYFHVPYTPVTSTTTTSTTTATTT STTTVTSTAVATVTSTATVTSTSTVVSTTTTTAVSTVTVTKPVISTTLVIGIVIIVIVIAIVAAVLALRR >Mature_789_residues GKLSISRHIWLILGAIVVMSISIASAQSSYPTYTLYYAAPWYYVVVPPWPAPWYNPFSSLSLWPIWWASDYAPLALWNPT TNEFWPVLASNWTVFPQNKTLIIYLRHNLYWFNGSATIPFTAWDVYAYFYIEAKAFNAYSPWISPQNADKDIIVLNNYTI EFHFDVWSPTEWIFILITRPETPWPVWENVVNELKTMNASEAYTFGQKNITEMVVPYWSLGPYYASHVSPQTITVQLVPQ QLLTEWGSVFPFHTWQYYPELNAYISLSSGTTQLLELMATHSNFFVLGWTAPPSTYQVAIKDGYVFNPMPDISTMGFSIP AYYPFNIPAVRQAFAYIINRTEATLAWGPPPYAYYPVWILAPAPAPNVVPGLWSTIPEGIRSMVINYTVNWSYASQLLES AGLTYKSGQWYLPNGTPLTLTLYTDGRTDWLTISSEIAAQLGKFGIPTKVISVEAATYSTEETTCKLPDNVDFIYAGLNK GGYDTFWVSLTSAQWNGPALFPAAWCINGTTTPFAYPIVQSNQITGWYCKPLTTNLPIPNNTIIWCINSTYGLINLTNWE DAITAAEPGSSTYYELIKAFYAWSEYWVPAIQIGTEAIAQGAVPKYVNMGWLMKCIPFNASKYSEAAYTLEYPHGMSGAS FDTIDLVFLGGFAPQGVMPPLAQAIVNGSLWTKYPQYAAFIGLPNPDPQLQACVASYFHVPYTPVTSTTTTSTTTATTTS TTTVTSTAVATVTSTATVTSTSTVVSTTTTTAVSTVTVTKPVISTTLVIGIVIIVIVIAIVAAVLALRR
Specific function: Unknown
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87824; Mature: 87692
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLSISRHIWLILGAIVVMSISIASAQSSYPTYTLYYAAPWYYVVVPPWPAPWYNPFSS CCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCC LSLWPIWWASDYAPLALWNPTTNEFWPVLASNWTVFPQNKTLIIYLRHNLYWFNGSATIP CEEEEEEECCCCCCEEEECCCCCCCCHHEECCEEEECCCCEEEEEEEEEEEEECCCEEEE FTAWDVYAYFYIEAKAFNAYSPWISPQNADKDIIVLNNYTIEFHFDVWSPTEWIFILITR EEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEC PETPWPVWENVVNELKTMNASEAYTFGQKNITEMVVPYWSLGPYYASHVSPQTITVQLVP CCCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHCCCCCCCCCHHHHCCCCCEEEEEECC QQLLTEWGSVFPFHTWQYYPELNAYISLSSGTTQLLELMATHSNFFVLGWTAPPSTYQVA HHHHHHHCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCEEEEE IKDGYVFNPMPDISTMGFSIPAYYPFNIPAVRQAFAYIINRTEATLAWGPPPYAYYPVWI EECCEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE LAPAPAPNVVPGLWSTIPEGIRSMVINYTVNWSYASQLLESAGLTYKSGQWYLPNGTPLT EECCCCCCCCCHHHHHHHHHHHEEEEEEEECHHHHHHHHHHCCCEEECCCEECCCCCEEE LTLYTDGRTDWLTISSEIAAQLGKFGIPTKVISVEAATYSTEETTCKLPDNVDFIYAGLN EEEEECCCCEEEEECHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCCCCEEEEEECC KGGYDTFWVSLTSAQWNGPALFPAAWCINGTTTPFAYPIVQSNQITGWYCKPLTTNLPIP CCCCEEEEEEEECCCCCCCEECCEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCCCCC NNTIIWCINSTYGLINLTNWEDAITAAEPGSSTYYELIKAFYAWSEYWVPAIQIGTEAIA CCEEEEEEECCCCEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHH QGAVPKYVNMGWLMKCIPFNASKYSEAAYTLEYPHGMSGASFDTIDLVFLGGFAPQGVMP CCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCC PLAQAIVNGSLWTKYPQYAAFIGLPNPDPQLQACVASYFHVPYTPVTSTTTTSTTTATTT HHHHHHHCCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC STTTVTSTAVATVTSTATVTSTSTVVSTTTTTAVSTVTVTKPVISTTLVIGIVIIVIVIA CCEEEEEEEEEEEEECEEEEECCEEEEEEECEEEEEEEEEHHHHHHHHHHHHHHHHHHHH IVAAVLALRR HHHHHHHHCC >Mature Secondary Structure GKLSISRHIWLILGAIVVMSISIASAQSSYPTYTLYYAAPWYYVVVPPWPAPWYNPFSS CCCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCC LSLWPIWWASDYAPLALWNPTTNEFWPVLASNWTVFPQNKTLIIYLRHNLYWFNGSATIP CEEEEEEECCCCCCEEEECCCCCCCCHHEECCEEEECCCCEEEEEEEEEEEEECCCEEEE FTAWDVYAYFYIEAKAFNAYSPWISPQNADKDIIVLNNYTIEFHFDVWSPTEWIFILITR EEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEC PETPWPVWENVVNELKTMNASEAYTFGQKNITEMVVPYWSLGPYYASHVSPQTITVQLVP CCCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHCCCCCCCCCHHHHCCCCCEEEEEECC QQLLTEWGSVFPFHTWQYYPELNAYISLSSGTTQLLELMATHSNFFVLGWTAPPSTYQVA HHHHHHHCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCEEEEE IKDGYVFNPMPDISTMGFSIPAYYPFNIPAVRQAFAYIINRTEATLAWGPPPYAYYPVWI EECCEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE LAPAPAPNVVPGLWSTIPEGIRSMVINYTVNWSYASQLLESAGLTYKSGQWYLPNGTPLT EECCCCCCCCCHHHHHHHHHHHEEEEEEEECHHHHHHHHHHCCCEEECCCEECCCCCEEE LTLYTDGRTDWLTISSEIAAQLGKFGIPTKVISVEAATYSTEETTCKLPDNVDFIYAGLN EEEEECCCCEEEEECHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCCCCEEEEEECC KGGYDTFWVSLTSAQWNGPALFPAAWCINGTTTPFAYPIVQSNQITGWYCKPLTTNLPIP CCCCEEEEEEEECCCCCCCEECCEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCCCCC NNTIIWCINSTYGLINLTNWEDAITAAEPGSSTYYELIKAFYAWSEYWVPAIQIGTEAIA CCEEEEEEECCCCEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHH QGAVPKYVNMGWLMKCIPFNASKYSEAAYTLEYPHGMSGASFDTIDLVFLGGFAPQGVMP CCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCC PLAQAIVNGSLWTKYPQYAAFIGLPNPDPQLQACVASYFHVPYTPVTSTTTTSTTTATTT HHHHHHHCCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC STTTVTSTAVATVTSTATVTSTSTVVSTTTTTAVSTVTVTKPVISTTLVIGIVIIVIVIA CCEEEEEEEEEEEEECEEEEECCEEEEEEECEEEEEEEEEHHHHHHHHHHHHHHHHHHHH IVAAVLALRR HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA