| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041141
Identifier: 159041141
GI number: 159041141
Start: 593839
End: 595038
Strand: Reverse
Name: 159041141
Synonym: Cmaq_0560
Alternate gene names: NA
Gene position: 595038-593839 (Counterclockwise)
Preceding gene: 159041143
Following gene: 159041134
Centisome position: 28.64
GC content: 45.08
Gene sequence:
>1200_bases ATGAGTCTGGCTGAGGAATGCCTATGGAACTTAGACTGCATTAAGACTAGGGTTATTAAGGAGATTAGGGAACTACCTAG GAGTAAGGGGGCATTACTTAGGCACATTAATGAACTCCCAGATGGCCTCCTTGAGGAGACTGGTAGAGAGTTAAAGGAGA GTGATGTGGAATTACTGCTCAGCATTGAGTTAAGTGATAAGGCAGTGTCCCTAATCAGTGGTGTTGACCCAGGTAATATA AGTAGCATTAACTTATTAATTAAATTAACTGAGACACTAATGGAGAGGGGTAGGTTTAGTAAGGCCATGGAGCTGCTTAA AGGTAGAGTAAATAATGCGGTTGGGGAGAATTCACTTAGGTTAAGGGTGCTTATGGAATTGTGTCAAGGATTCATGAACC TTGAATCCTCCAGTGTTGAGCATAGTAGAGGTAATCATGATGCTGAGTTTAGGTTAATTAATGAAGCCATGAGCCACTTC TCAGAGGCGTATAGGCATTACGAGGACTTGGGGGAACTGAATAATGCCCTTGAGGTTAGGTTAACGGGCCTAATTGAATT AGCTAAGTATTACTTAACCCACGGTGACTTAGATAACGCTAGGTCAACATACCTTCAATGCTCCTCAGCGGCTAGGTGGA GTGAGGGGCATTTGATTGAAGCCACTAGGTGCAGCGCCATGGCTAGGTTGATAGACGCCATTGAGGACAGTAACCCAGTT TACTACGAGGAGGCTGGTGACATGCTGCTTAATATAACCCAGGAGGAGCCTGAGGTGGCTGAGGAGGCTAAGGCAGCCTA CGGTTCGGCACTTCAATTAACCAGTAGTGATGAGGATAAGGGGAGATTATTCATGAAGTATTTAACAGCAACAATAATTC ACATTGACTGGCTAGTAAGCCAGAGGTACGGTGGCTTTGAGGGCTTAATAAACGCGATTAAGAGCCTAGGGTTAAGGGGG GTGGTTAATGAGTTAAGTATCAATGAGGGGCAGATTAGGCTTTACCTGGAGACTAAGGCCTTGGCGAAGGTGGGTGGGTT TAATGGCGTTAAAGTTGCCGTAGCCTTAACCCTAATGGGGCTCACCCTATCCTCAAGCACCAGTGAGTTAATGAGGAAAC TGAGGGAGGCTGGTGTTGAGGTAAGTGAGGGTATGCTTAATGAGGCTAAGAATGTTCTGGGTAATTGGCTTAACTATTAA
Upstream 100 bases:
>100_bases CATTAAACTAAGTTAAATACCACGCATGGGAATCAATCAACTTCAATACTTGAATTAAGGGCATTTGGTTTAAAAATTAG GCTTCACTAAGATTAATGAA
Downstream 100 bases:
>100_bases ACTTCATACCCTTCCTATAAACCACAGCCCCATTACTCCTCCTTACCAGTAGAATCCTGTGATACGGTATGAAGGATTCA ACTCCATTAATCCCTATCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MSLAEECLWNLDCIKTRVIKEIRELPRSKGALLRHINELPDGLLEETGRELKESDVELLLSIELSDKAVSLISGVDPGNI SSINLLIKLTETLMERGRFSKAMELLKGRVNNAVGENSLRLRVLMELCQGFMNLESSSVEHSRGNHDAEFRLINEAMSHF SEAYRHYEDLGELNNALEVRLTGLIELAKYYLTHGDLDNARSTYLQCSSAARWSEGHLIEATRCSAMARLIDAIEDSNPV YYEEAGDMLLNITQEEPEVAEEAKAAYGSALQLTSSDEDKGRLFMKYLTATIIHIDWLVSQRYGGFEGLINAIKSLGLRG VVNELSINEGQIRLYLETKALAKVGGFNGVKVAVALTLMGLTLSSSTSELMRKLREAGVEVSEGMLNEAKNVLGNWLNY
Sequences:
>Translated_399_residues MSLAEECLWNLDCIKTRVIKEIRELPRSKGALLRHINELPDGLLEETGRELKESDVELLLSIELSDKAVSLISGVDPGNI SSINLLIKLTETLMERGRFSKAMELLKGRVNNAVGENSLRLRVLMELCQGFMNLESSSVEHSRGNHDAEFRLINEAMSHF SEAYRHYEDLGELNNALEVRLTGLIELAKYYLTHGDLDNARSTYLQCSSAARWSEGHLIEATRCSAMARLIDAIEDSNPV YYEEAGDMLLNITQEEPEVAEEAKAAYGSALQLTSSDEDKGRLFMKYLTATIIHIDWLVSQRYGGFEGLINAIKSLGLRG VVNELSINEGQIRLYLETKALAKVGGFNGVKVAVALTLMGLTLSSSTSELMRKLREAGVEVSEGMLNEAKNVLGNWLNY >Mature_398_residues SLAEECLWNLDCIKTRVIKEIRELPRSKGALLRHINELPDGLLEETGRELKESDVELLLSIELSDKAVSLISGVDPGNIS SINLLIKLTETLMERGRFSKAMELLKGRVNNAVGENSLRLRVLMELCQGFMNLESSSVEHSRGNHDAEFRLINEAMSHFS EAYRHYEDLGELNNALEVRLTGLIELAKYYLTHGDLDNARSTYLQCSSAARWSEGHLIEATRCSAMARLIDAIEDSNPVY YEEAGDMLLNITQEEPEVAEEAKAAYGSALQLTSSDEDKGRLFMKYLTATIIHIDWLVSQRYGGFEGLINAIKSLGLRGV VNELSINEGQIRLYLETKALAKVGGFNGVKVAVALTLMGLTLSSSTSELMRKLREAGVEVSEGMLNEAKNVLGNWLNY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44377; Mature: 44246
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAEECLWNLDCIKTRVIKEIRELPRSKGALLRHINELPDGLLEETGRELKESDVELLL CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCEEEEE SIELSDKAVSLISGVDPGNISSINLLIKLTETLMERGRFSKAMELLKGRVNNAVGENSLR EEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LRVLMELCQGFMNLESSSVEHSRGNHDAEFRLINEAMSHFSEAYRHYEDLGELNNALEVR HHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH LTGLIELAKYYLTHGDLDNARSTYLQCSSAARWSEGHLIEATRCSAMARLIDAIEDSNPV HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCE YYEEAGDMLLNITQEEPEVAEEAKAAYGSALQLTSSDEDKGRLFMKYLTATIIHIDWLVS EEECCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH QRYGGFEGLINAIKSLGLRGVVNELSINEGQIRLYLETKALAKVGGFNGVKVAVALTLMG HCCCCHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHH LTLSSSTSELMRKLREAGVEVSEGMLNEAKNVLGNWLNY HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SLAEECLWNLDCIKTRVIKEIRELPRSKGALLRHINELPDGLLEETGRELKESDVELLL CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCEEEEE SIELSDKAVSLISGVDPGNISSINLLIKLTETLMERGRFSKAMELLKGRVNNAVGENSLR EEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LRVLMELCQGFMNLESSSVEHSRGNHDAEFRLINEAMSHFSEAYRHYEDLGELNNALEVR HHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH LTGLIELAKYYLTHGDLDNARSTYLQCSSAARWSEGHLIEATRCSAMARLIDAIEDSNPV HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCE YYEEAGDMLLNITQEEPEVAEEAKAAYGSALQLTSSDEDKGRLFMKYLTATIIHIDWLVS EEECCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH QRYGGFEGLINAIKSLGLRGVVNELSINEGQIRLYLETKALAKVGGFNGVKVAVALTLMG HCCCCHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHH LTLSSSTSELMRKLREAGVEVSEGMLNEAKNVLGNWLNY HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA