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The map label for this gene is rps13p [H]

Identifier: 159041085

GI number: 159041085

Start: 538707

End: 539195

Strand: Reverse

Name: rps13p [H]

Synonym: Cmaq_0502

Alternate gene names: 159041085

Gene position: 539195-538707 (Counterclockwise)

Preceding gene: 159041086

Following gene: 159041084

Centisome position: 25.95

GC content: 50.31

Gene sequence:

>489_bases
ATGTCTGAGGCTAGTCAAGGTAGGCAAATAGTGCATATTGGGGATACTGACCTAGATGGCTCTAAGGCCGTTGCCTACGC
GTTAGCTAGGATTAAGGGTATTGGGGTATCCACTGCAGTAGCCATATGCAGGAACCTGGGTATTAATCCATTGGTTAAGT
TGGGGGAATTGAATGAGGAGATGATTAGGAAAATAGATTGGGCGGTTAGGAACCTCCACCAAGCAGCCCCAGCCTGGTTC
GTTAATAGGCCTAAGGATCCTGAAACAGGAAGAAACATACACCTAATAGGAGCTGACTTAATATTAACGGCTAGGAATGA
TATAGAGAGGGAGAGGCGCATACTATCCTGGAGGGGAATTAGGCACAACCTAGGCCTAAAGGTTAGGGGGCAGAGGACTA
GGACAACGGGTAGGCTTGGGCCGGTGGCTGGTGTTCAACGTAGGAGAACGCCCACTGGAGCCGGTGGAGGGGAGGGTGGC
CAAGGTTAA

Upstream 100 bases:

>100_bases
TATAGTGGTTATGATTATTCTTTGGCTTGCATTAAATGAGGTTGAGAAGAAGGTTAAATGAAGTGAAAATGCATATAAAG
GGAGGTTAGCCTGCTCCCTA

Downstream 100 bases:

>100_bases
TCAACCATTGAATAACACTTATTAACTTCCTCATTAAGCCTTCCTCAATGCTGAGAGTACACTTAATTCAGTACGCCAGT
AGGCTGGGTGATCCTGAGTA

Product: 30S ribosomal protein S13P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSEASQGRQIVHIGDTDLDGSKAVAYALARIKGIGVSTAVAICRNLGINPLVKLGELNEEMIRKIDWAVRNLHQAAPAWF
VNRPKDPETGRNIHLIGADLILTARNDIERERRILSWRGIRHNLGLKVRGQRTRTTGRLGPVAGVQRRRTPTGAGGGEGG
QG

Sequences:

>Translated_162_residues
MSEASQGRQIVHIGDTDLDGSKAVAYALARIKGIGVSTAVAICRNLGINPLVKLGELNEEMIRKIDWAVRNLHQAAPAWF
VNRPKDPETGRNIHLIGADLILTARNDIERERRILSWRGIRHNLGLKVRGQRTRTTGRLGPVAGVQRRRTPTGAGGGEGG
QG
>Mature_161_residues
SEASQGRQIVHIGDTDLDGSKAVAYALARIKGIGVSTAVAICRNLGINPLVKLGELNEEMIRKIDWAVRNLHQAAPAWFV
NRPKDPETGRNIHLIGADLILTARNDIERERRILSWRGIRHNLGLKVRGQRTRTTGRLGPVAGVQRRRTPTGAGGGEGGQ
G

Specific function: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicat

COG id: COG0099

COG function: function code J; Ribosomal protein S13

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S13P family [H]

Homologues:

Organism=Homo sapiens, GI11968182, Length=146, Percent_Identity=34.9315068493151, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17542018, Length=143, Percent_Identity=39.1608391608392, Blast_Score=100, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6323615, Length=139, Percent_Identity=35.9712230215827, Blast_Score=99, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6320658, Length=139, Percent_Identity=35.9712230215827, Blast_Score=99, Evalue=5e-22,
Organism=Drosophila melanogaster, GI17136882, Length=143, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24656100, Length=143, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001892
- InterPro:   IPR010979
- InterPro:   IPR019977
- InterPro:   IPR018269 [H]

Pfam domain/function: PF00416 Ribosomal_S13 [H]

EC number: NA

Molecular weight: Translated: 17624; Mature: 17492

Theoretical pI: Translated: 11.69; Mature: 11.69

Prosite motif: PS00646 RIBOSOMAL_S13_1 ; PS50159 RIBOSOMAL_S13_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEASQGRQIVHIGDTDLDGSKAVAYALARIKGIGVSTAVAICRNLGINPLVKLGELNEE
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCHH
MIRKIDWAVRNLHQAAPAWFVNRPKDPETGRNIHLIGADLILTARNDIERERRILSWRGI
HHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHHHHHCCH
RHNLGLKVRGQRTRTTGRLGPVAGVQRRRTPTGAGGGEGGQG
HCCCCEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEASQGRQIVHIGDTDLDGSKAVAYALARIKGIGVSTAVAICRNLGINPLVKLGELNEE
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCHH
MIRKIDWAVRNLHQAAPAWFVNRPKDPETGRNIHLIGADLILTARNDIERERRILSWRGI
HHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHHHHHCCH
RHNLGLKVRGQRTRTTGRLGPVAGVQRRRTPTGAGGGEGGQG
HCCCCEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA