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The map label for this gene is rpl4lp [H]

Identifier: 159040902

GI number: 159040902

Start: 353183

End: 354019

Strand: Reverse

Name: rpl4lp [H]

Synonym: Cmaq_0316

Alternate gene names: 159040902

Gene position: 354019-353183 (Counterclockwise)

Preceding gene: 159040903

Following gene: 159040901

Centisome position: 17.04

GC content: 48.03

Gene sequence:

>837_bases
GTGAGTATTGACTTATCTCCATTACTTAAGAATAAGTATGAGGTTCCAGCTAAGGCTAAGTTACTGAACCTTAACGGTGA
GGCGGTTGGTGAGGTTGACTTACCTGAGCATTTCAAGACACCGATAAGACTGGACTTAATTAGGAGGGCTGTCTTAAGTG
CATTAACTGCTAGGCTTCAACCAAAGGGTACTGATAAGGAGGCTGGGTTAAGGACGTCTGCGGTAAGCTTCGGTACTGGC
TTAGGTATAGCCAGGGTTCCTAGGATTAAGGGTAACATGTGGCCGAGGGCTAGGATTGCGCCAAATGTGGTTAAGGGAAG
GAGGGCTCACCCACCTAAAGTTGAGAAGAGGCTGTGGGAGAGGATTAATAGGAAGGAGAGGCTTCTGGCAATTAGGTCAG
CCATAGCGGCCACCGCGGTTAGGGAGCTTATAATGGCGAGAGGACACTTGGTGGGGGATGTTAAGGCAATACCGCTCGTA
GTGGTTAATGAATTTGAGGGAATCAGTAAGGCTGCTGACGTTAAGAATGTGTTTAAGGCCCTTGGAGTATGGAGTGATGT
AGTTAAGGCCCAGGGTAATGTAAGGATTAGGGCTGGGAGGGGTAAGATGAGGGGTAGGAGGTATAAGGAGCCTAAGAGCA
TTCTTGTGGTTGTTTCAAGGAAGGATGCACCAGTAATTAGGGCTGTTAGGAACATGGCTGGAGTCGACGTCGTCTACGTT
GATAACCTAAGCATACTACACTTAGCGCCAGGGGGTGTGCCAGGTAGGTTAACATTATGGACCCAGGGGGCTATTGAAAG
ATTAAGTAATGAAAAGCTCTTCACAGTGGGTGAGTGA

Upstream 100 bases:

>100_bases
AGGTACCCCATTAGGCCGCCGTTTAACTATGATCTTAAGCAGGTTCAGGCACCAAGCGTGACTTGGGTAAGCGTAATGGG
TGTTAGTGGGGTGAGTTGAA

Downstream 100 bases:

>100_bases
GCATGTCTACTCAACCAATTATAACTAGGTTTGTTTTAACTGAAAAGGCCATTAGGCTAGCTGAGAAGGAGAATACATTA
ACCATAGTGGTGCCTAGGAG

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSIDLSPLLKNKYEVPAKAKLLNLNGEAVGEVDLPEHFKTPIRLDLIRRAVLSALTARLQPKGTDKEAGLRTSAVSFGTG
LGIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWERINRKERLLAIRSAIAATAVRELIMARGHLVGDVKAIPLV
VVNEFEGISKAADVKNVFKALGVWSDVVKAQGNVRIRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYV
DNLSILHLAPGGVPGRLTLWTQGAIERLSNEKLFTVGE

Sequences:

>Translated_278_residues
MSIDLSPLLKNKYEVPAKAKLLNLNGEAVGEVDLPEHFKTPIRLDLIRRAVLSALTARLQPKGTDKEAGLRTSAVSFGTG
LGIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWERINRKERLLAIRSAIAATAVRELIMARGHLVGDVKAIPLV
VVNEFEGISKAADVKNVFKALGVWSDVVKAQGNVRIRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYV
DNLSILHLAPGGVPGRLTLWTQGAIERLSNEKLFTVGE
>Mature_277_residues
SIDLSPLLKNKYEVPAKAKLLNLNGEAVGEVDLPEHFKTPIRLDLIRRAVLSALTARLQPKGTDKEAGLRTSAVSFGTGL
GIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWERINRKERLLAIRSAIAATAVRELIMARGHLVGDVKAIPLVV
VNEFEGISKAADVKNVFKALGVWSDVVKAQGNVRIRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYVD
NLSILHLAPGGVPGRLTLWTQGAIERLSNEKLFTVGE

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=247, Percent_Identity=37.246963562753, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17508669, Length=242, Percent_Identity=37.1900826446281, Blast_Score=150, Evalue=6e-37,
Organism=Saccharomyces cerevisiae, GI6319505, Length=250, Percent_Identity=38, Blast_Score=133, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6320215, Length=250, Percent_Identity=38, Blast_Score=133, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24650747, Length=242, Percent_Identity=36.7768595041322, Blast_Score=140, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 30547; Mature: 30415

Theoretical pI: Translated: 11.59; Mature: 11.59

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDLSPLLKNKYEVPAKAKLLNLNGEAVGEVDLPEHFKTPIRLDLIRRAVLSALTARLQ
CCCCCCHHHCCCCCCCCCEEEEECCCCEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC
PKGTDKEAGLRTSAVSFGTGLGIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWE
CCCCCHHCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHH
RINRKERLLAIRSAIAATAVRELIMARGHLVGDVKAIPLVVVNEFEGISKAADVKNVFKA
HHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEECEEEEEECCCCCHHHHHHHHHHHH
LGVWSDVVKAQGNVRIRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYV
HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEE
DNLSILHLAPGGVPGRLTLWTQGAIERLSNEKLFTVGE
CCEEEEEECCCCCCCEEEEEEHHHHHHHCCCCEEEECC
>Mature Secondary Structure 
SIDLSPLLKNKYEVPAKAKLLNLNGEAVGEVDLPEHFKTPIRLDLIRRAVLSALTARLQ
CCCCCHHHCCCCCCCCCEEEEECCCCEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC
PKGTDKEAGLRTSAVSFGTGLGIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWE
CCCCCHHCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHH
RINRKERLLAIRSAIAATAVRELIMARGHLVGDVKAIPLVVVNEFEGISKAADVKNVFKA
HHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEECEEEEEECCCCCHHHHHHHHHHHH
LGVWSDVVKAQGNVRIRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYV
HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEE
DNLSILHLAPGGVPGRLTLWTQGAIERLSNEKLFTVGE
CCEEEEEECCCCCCCEEEEEEHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]