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The map label for this gene is rpl23p

Identifier: 159040901

GI number: 159040901

Start: 352920

End: 353180

Strand: Reverse

Name: rpl23p

Synonym: Cmaq_0315

Alternate gene names: 159040901

Gene position: 353180-352920 (Counterclockwise)

Preceding gene: 159040902

Following gene: 159040899

Centisome position: 17.0

GC content: 37.55

Gene sequence:

>261_bases
ATGTCTACTCAACCAATTATAACTAGGTTTGTTTTAACTGAAAAGGCCATTAGGCTAGCTGAGAAGGAGAATACATTAAC
CATAGTGGTGCCTAGGAGTGTTAATAAGAAGGTGATTAAGGATTACGTGGAGAAGGCCTATAAGGTTAAGGTCATTGATG
TGAGGACATTAATAACAATGGAGGGGGAGAAGAAGGCTTACGTAAGGTTATCAAGCGAGAATAATGCCATTGAATTACTA
ACTAATTTAGGATTACTGTGA

Upstream 100 bases:

>100_bases
ACTTAGCGCCAGGGGGTGTGCCAGGTAGGTTAACATTATGGACCCAGGGGGCTATTGAAAGATTAAGTAATGAAAAGCTC
TTCACAGTGGGTGAGTGAGC

Downstream 100 bases:

>100_bases
TTTTTCCTGTGACTCAATGAATGGTTTAAGTGATTCAGGCACCCTTAGGGCTAATGCAGCGGCACCAATTATACCAATAT
CATCCCCAAAGCGTGTTCCC

Product: 50S ribosomal protein L25/L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSTQPIITRFVLTEKAIRLAEKENTLTIVVPRSVNKKVIKDYVEKAYKVKVIDVRTLITMEGEKKAYVRLSSENNAIELL
TNLGLL

Sequences:

>Translated_86_residues
MSTQPIITRFVLTEKAIRLAEKENTLTIVVPRSVNKKVIKDYVEKAYKVKVIDVRTLITMEGEKKAYVRLSSENNAIELL
TNLGLL
>Mature_85_residues
STQPIITRFVLTEKAIRLAEKENTLTIVVPRSVNKKVIKDYVEKAYKVKVIDVRTLITMEGEKKAYVRLSSENNAIELLT
NLGLL

Specific function: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

Organism=Caenorhabditis elegans, GI17569427, Length=81, Percent_Identity=40.7407407407407, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_CALMQ (A8MB73)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540153.1
- ProteinModelPortal:   A8MB73
- SMR:   A8MB73
- GeneID:   5710452
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0315
- HOGENOM:   HBG439330
- OMA:   NTITILV
- BioCyc:   CMAQ397948:CMAQ_0315-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_A
- InterPro:   IPR012677
- InterPro:   IPR019985
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330
- TIGRFAMs:   TIGR03636

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 9791; Mature: 9660

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQPIITRFVLTEKAIRLAEKENTLTIVVPRSVNKKVIKDYVEKAYKVKVIDVRTLITM
CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEEEEEE
EGEKKAYVRLSSENNAIELLTNLGLL
CCCCEEEEEECCCCCEEEEEECCCCC
>Mature Secondary Structure 
STQPIITRFVLTEKAIRLAEKENTLTIVVPRSVNKKVIKDYVEKAYKVKVIDVRTLITM
CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEEEEEE
EGEKKAYVRLSSENNAIELLTNLGLL
CCCCEEEEEECCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA