| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159040818
Identifier: 159040818
GI number: 159040818
Start: 267533
End: 269896
Strand: Reverse
Name: 159040818
Synonym: Cmaq_0232
Alternate gene names: NA
Gene position: 269896-267533 (Counterclockwise)
Preceding gene: 159040819
Following gene: 159040817
Centisome position: 12.99
GC content: 40.78
Gene sequence:
>2364_bases ATGCCTAAACTCAATAAAAACACGATACTACCAGTAATCATAATAGCCGCAGTAATCATACTGTACAGCTCAATAACAGC ACACGCGCAACAAAAGCCGCAATTCGTAATACCGACATGGGGTACTTTATTATATGTTCCTGGTAGCCCAGTATGGAATC CATATGCTCCTGGTAATGATATTTGGTGGCCTACATCAGCCCCACCATTAGCGTTTTGGAGCGTATTCACAGGTCAGCCA TTACCGATTTTAGCTAAGAATTGGACTGTTGAGGTTTTGCCTAATGGTAGTGGTATTTTAACGATTTACCTTAGGCATGA TATTTATTGGTTTAATGGTTCAGCTACAATGCCTTTCACCGCATGGGATGTTTACGCCTACTTCTATATTGGTATGAAGG CTTTTGGTTGGTATGTGCCGTTCATAAACCAATCCCTTGTTGATGAAGACGTTAGAGTACTAAACAACTACACTATTCAA TTCCTATTCCAGAAGTGGGCACCATACATACCATACTGGATCTTAACAAGTAATACACCAACACCGTACTCAGTTTGGAA ACCAATAGTCGATGCATTAAAAACAATGAATGTAACACAAGCCATAGAATTTGGTTCAACGAATATAACGAAGTTTGTAC CACCATACTGGGGTCTTGGCCCATATTACATGACCTCAATAGGCTCTAACTTTGTAGCATATACACTAGAGCCCTTATAC TTTAATGGTATACCACTTCTAGCAACATGGCTTAAAATATTACCATGGGAGTCATGGACTTATTATGATCCAACTATAAT TAATAAGTTCATCCCAGGGGGAACAGCCTCAATATTAACAATGATTGAGGCTCACCAAAACATGGGATACATAAGTGTTG GCTGGACTGCTCAGCAGCTTAAAATCATAAACAGTACACCAGGTTATGCTGTTCTTTGGTATCCTGGATTCTGGTCATTT GGTATTGCTCTCAATCCTTACGTATATCCATTCAACTTACCTCAAGTAAGGCAAGCCTTCTGTTACGCTGTAAATAGGAC TGAGGTCTCATTATCATGGATATCTTCCCCAGCACCTTATCCTGCCCCTGTTACACCAAATGTAGCGTTCACTTTCCCGG CATCAGTCCTGAAATACTACATCCCATGCACATATAACTTAACTTATGCCAGTGACTTACTCAAGTCTGCCGGCCTCACC TATAAGAATGGTCAATGGTACTTACCTAATGGTACATCATTAACAATCTTAATCTCTGGTCCAAGTGGCTGGACATACTT TATGACTCAAGGTGAGGTTGTTGCTGAGGAATGGTCAGCTTTCGGTGTTCCCACGAAGGAATTAAGCCTTGATTTAAGTA CATATTTTGGTACCATTTGGCCTCATCTTGAGTGGGAGGCCGCAGAGATTCAGGCGCCAGAATTTCTAGTGCATAGTTAT GAATCCGCATGGACCTATTTATCTAGTCAATCCTGGATTACTACTTTCATAAACATCAGTAAGCCTTGGCCATTCGCATG GCCTACTACGTCAAACGGCAAGATCACTGGCTGGTACTGCTCACCAGTAACAGTTACTGTACCATCAATGTATAATAGTA CTCCACCTTACTTAAACGGCACTATTGTGACGTGTGTTAACTCAACGTTTGGGTACATTAATTTAACAAATTGGTTTAAT ACATATGATGTGTCAACTCCAGGAAGCAATTTATATGAGTACTTAACGGAGGTCTTATTTGCATGGTATGATTACTATGT TCCTGTAATACCGATAGTCTATTACCCATATATAAAAGTTTATCAGCCAAGTTACATGGATCCGCTATGGCTCTATAAGT GTGCATTACCTTATGCATCAATTATGTTCTACAATATACTGGATGCTCATGAGAATGGTGGCCAATGGAATGTATGGGCA GGTTCACCTAGGGAATGGCTTGACCTTGGAGCAATAGCTCCGCCGCCAAATGTACCACCTTTAGCTCAATTAATCGCTAA TGGTAGTCTTTGGACTAAGTATCCTCAGTTTGCGGCTTACCTAGGTATTCCTAATCCTGATCCAAGCCTACAGCAGTGTG TTGCATCGTACTTCCATATACCGTATACTCCAGTATCAACCACTACACCAGTAACCACTACTTCAACTACTACTTCAACA GTAACCACTACTGCTGTTAGCACTGTTACAAGCACAGTCACAACCACTGCCGTAAGCACAGTGACTAGTACAGCAACAAC CACAGCAGTATCCACAGTAACCGTGACTAAACCAGTAATATCAACAGCACTAATAGCAGGAATAGTAATAATAGTAATAG TCATAGCCATAGTAGCAGCAATAATAACACTAAGAAGAAGATGA
Upstream 100 bases:
>100_bases TATGGTTTAATTAAATTCATTAGAAGCAATCACTTACTAAAACATGTTTAATCACCAATATTGTAGCAAAAATTATTAAC CATTAGCATTAATAAAAATT
Downstream 100 bases:
>100_bases GGTAATGATTTACGTTAAGTCAATGGTCTTAAATTTAAAATTAAGTTTTTCTTAAATCCTCTGATTAAAGTGAGTCCCCT TCAGGGATTAACTGCCAATG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MPKLNKNTILPVIIIAAVIILYSSITAHAQQKPQFVIPTWGTLLYVPGSPVWNPYAPGNDIWWPTSAPPLAFWSVFTGQP LPILAKNWTVEVLPNGSGILTIYLRHDIYWFNGSATMPFTAWDVYAYFYIGMKAFGWYVPFINQSLVDEDVRVLNNYTIQ FLFQKWAPYIPYWILTSNTPTPYSVWKPIVDALKTMNVTQAIEFGSTNITKFVPPYWGLGPYYMTSIGSNFVAYTLEPLY FNGIPLLATWLKILPWESWTYYDPTIINKFIPGGTASILTMIEAHQNMGYISVGWTAQQLKIINSTPGYAVLWYPGFWSF GIALNPYVYPFNLPQVRQAFCYAVNRTEVSLSWISSPAPYPAPVTPNVAFTFPASVLKYYIPCTYNLTYASDLLKSAGLT YKNGQWYLPNGTSLTILISGPSGWTYFMTQGEVVAEEWSAFGVPTKELSLDLSTYFGTIWPHLEWEAAEIQAPEFLVHSY ESAWTYLSSQSWITTFINISKPWPFAWPTTSNGKITGWYCSPVTVTVPSMYNSTPPYLNGTIVTCVNSTFGYINLTNWFN TYDVSTPGSNLYEYLTEVLFAWYDYYVPVIPIVYYPYIKVYQPSYMDPLWLYKCALPYASIMFYNILDAHENGGQWNVWA GSPREWLDLGAIAPPPNVPPLAQLIANGSLWTKYPQFAAYLGIPNPDPSLQQCVASYFHIPYTPVSTTTPVTTTSTTTST VTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAIVAAIITLRRR
Sequences:
>Translated_787_residues MPKLNKNTILPVIIIAAVIILYSSITAHAQQKPQFVIPTWGTLLYVPGSPVWNPYAPGNDIWWPTSAPPLAFWSVFTGQP LPILAKNWTVEVLPNGSGILTIYLRHDIYWFNGSATMPFTAWDVYAYFYIGMKAFGWYVPFINQSLVDEDVRVLNNYTIQ FLFQKWAPYIPYWILTSNTPTPYSVWKPIVDALKTMNVTQAIEFGSTNITKFVPPYWGLGPYYMTSIGSNFVAYTLEPLY FNGIPLLATWLKILPWESWTYYDPTIINKFIPGGTASILTMIEAHQNMGYISVGWTAQQLKIINSTPGYAVLWYPGFWSF GIALNPYVYPFNLPQVRQAFCYAVNRTEVSLSWISSPAPYPAPVTPNVAFTFPASVLKYYIPCTYNLTYASDLLKSAGLT YKNGQWYLPNGTSLTILISGPSGWTYFMTQGEVVAEEWSAFGVPTKELSLDLSTYFGTIWPHLEWEAAEIQAPEFLVHSY ESAWTYLSSQSWITTFINISKPWPFAWPTTSNGKITGWYCSPVTVTVPSMYNSTPPYLNGTIVTCVNSTFGYINLTNWFN TYDVSTPGSNLYEYLTEVLFAWYDYYVPVIPIVYYPYIKVYQPSYMDPLWLYKCALPYASIMFYNILDAHENGGQWNVWA GSPREWLDLGAIAPPPNVPPLAQLIANGSLWTKYPQFAAYLGIPNPDPSLQQCVASYFHIPYTPVSTTTPVTTTSTTTST VTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAIVAAIITLRRR >Mature_786_residues PKLNKNTILPVIIIAAVIILYSSITAHAQQKPQFVIPTWGTLLYVPGSPVWNPYAPGNDIWWPTSAPPLAFWSVFTGQPL PILAKNWTVEVLPNGSGILTIYLRHDIYWFNGSATMPFTAWDVYAYFYIGMKAFGWYVPFINQSLVDEDVRVLNNYTIQF LFQKWAPYIPYWILTSNTPTPYSVWKPIVDALKTMNVTQAIEFGSTNITKFVPPYWGLGPYYMTSIGSNFVAYTLEPLYF NGIPLLATWLKILPWESWTYYDPTIINKFIPGGTASILTMIEAHQNMGYISVGWTAQQLKIINSTPGYAVLWYPGFWSFG IALNPYVYPFNLPQVRQAFCYAVNRTEVSLSWISSPAPYPAPVTPNVAFTFPASVLKYYIPCTYNLTYASDLLKSAGLTY KNGQWYLPNGTSLTILISGPSGWTYFMTQGEVVAEEWSAFGVPTKELSLDLSTYFGTIWPHLEWEAAEIQAPEFLVHSYE SAWTYLSSQSWITTFINISKPWPFAWPTTSNGKITGWYCSPVTVTVPSMYNSTPPYLNGTIVTCVNSTFGYINLTNWFNT YDVSTPGSNLYEYLTEVLFAWYDYYVPVIPIVYYPYIKVYQPSYMDPLWLYKCALPYASIMFYNILDAHENGGQWNVWAG SPREWLDLGAIAPPPNVPPLAQLIANGSLWTKYPQFAAYLGIPNPDPSLQQCVASYFHIPYTPVSTTTPVTTTSTTTSTV TTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAIVAAIITLRRR
Specific function: Unknown
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88179; Mature: 88048
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLNKNTILPVIIIAAVIILYSSITAHAQQKPQFVIPTWGTLLYVPGSPVWNPYAPGND CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCC IWWPTSAPPLAFWSVFTGQPLPILAKNWTVEVLPNGSGILTIYLRHDIYWFNGSATMPFT CCCCCCCCCCEEEHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCEE AWDVYAYFYIGMKAFGWYVPFINQSLVDEDVRVLNNYTIQFLFQKWAPYIPYWILTSNTP HHHHHHHHHHHHHHHHEEHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC TPYSVWKPIVDALKTMNVTQAIEFGSTNITKFVPPYWGLGPYYMTSIGSNFVAYTLEPLY CCHHHHHHHHHHHHHCCHHHHHCCCCCCCEEECCCCCCCCHHHHHHCCCCEEEEEECCEE FNGIPLLATWLKILPWESWTYYDPTIINKFIPGGTASILTMIEAHQNMGYISVGWTAQQL ECCHHHHHHHHHHCCCCCCCEECHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCEEE KIINSTPGYAVLWYPGFWSFGIALNPYVYPFNLPQVRQAFCYAVNRTEVSLSWISSPAPY EEEECCCCEEEEECCCCEECCEEECCEEEECCCHHHHHHHHHEECCCEEEEEEECCCCCC PAPVTPNVAFTFPASVLKYYIPCTYNLTYASDLLKSAGLTYKNGQWYLPNGTSLTILISG CCCCCCCEEEECCHHHHHEECCCEEECHHHHHHHHHCCCEEECCEEECCCCCEEEEEEEC PSGWTYFMTQGEVVAEEWSAFGVPTKELSLDLSTYFGTIWPHLEWEAAEIQAPEFLVHSY CCCEEEEEECCCEEHHHHHHCCCCHHHHEEEHHHHHHHHCCCCEECHHHCCCCHHHHHHH ESAWTYLSSQSWITTFINISKPWPFAWPTTSNGKITGWYCSPVTVTVPSMYNSTPPYLNG HHHHHEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCC TIVTCVNSTFGYINLTNWFNTYDVSTPGSNLYEYLTEVLFAWYDYYVPVIPIVYYPYIKV EEEEEECCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE YQPSYMDPLWLYKCALPYASIMFYNILDAHENGGQWNVWAGSPREWLDLGAIAPPPNVPP ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCH LAQLIANGSLWTKYPQFAAYLGIPNPDPSLQQCVASYFHIPYTPVSTTTPVTTTSTTTST HHHHHCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCE VTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAIVAA EEHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH IITLRRR HHHHCCC >Mature Secondary Structure PKLNKNTILPVIIIAAVIILYSSITAHAQQKPQFVIPTWGTLLYVPGSPVWNPYAPGND CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCC IWWPTSAPPLAFWSVFTGQPLPILAKNWTVEVLPNGSGILTIYLRHDIYWFNGSATMPFT CCCCCCCCCCEEEHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCEE AWDVYAYFYIGMKAFGWYVPFINQSLVDEDVRVLNNYTIQFLFQKWAPYIPYWILTSNTP HHHHHHHHHHHHHHHHEEHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC TPYSVWKPIVDALKTMNVTQAIEFGSTNITKFVPPYWGLGPYYMTSIGSNFVAYTLEPLY CCHHHHHHHHHHHHHCCHHHHHCCCCCCCEEECCCCCCCCHHHHHHCCCCEEEEEECCEE FNGIPLLATWLKILPWESWTYYDPTIINKFIPGGTASILTMIEAHQNMGYISVGWTAQQL ECCHHHHHHHHHHCCCCCCCEECHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCEEE KIINSTPGYAVLWYPGFWSFGIALNPYVYPFNLPQVRQAFCYAVNRTEVSLSWISSPAPY EEEECCCCEEEEECCCCEECCEEECCEEEECCCHHHHHHHHHEECCCEEEEEEECCCCCC PAPVTPNVAFTFPASVLKYYIPCTYNLTYASDLLKSAGLTYKNGQWYLPNGTSLTILISG CCCCCCCEEEECCHHHHHEECCCEEECHHHHHHHHHCCCEEECCEEECCCCCEEEEEEEC PSGWTYFMTQGEVVAEEWSAFGVPTKELSLDLSTYFGTIWPHLEWEAAEIQAPEFLVHSY CCCEEEEEECCCEEHHHHHHCCCCHHHHEEEHHHHHHHHCCCCEECHHHCCCCHHHHHHH ESAWTYLSSQSWITTFINISKPWPFAWPTTSNGKITGWYCSPVTVTVPSMYNSTPPYLNG HHHHHEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCC TIVTCVNSTFGYINLTNWFNTYDVSTPGSNLYEYLTEVLFAWYDYYVPVIPIVYYPYIKV EEEEEECCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE YQPSYMDPLWLYKCALPYASIMFYNILDAHENGGQWNVWAGSPREWLDLGAIAPPPNVPP ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCH LAQLIANGSLWTKYPQFAAYLGIPNPDPSLQQCVASYFHIPYTPVSTTTPVTTTSTTTST HHHHHCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCE VTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAIVAA EEHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH IITLRRR HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA