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The map label for this gene is fni [H]

Identifier: 159040817

GI number: 159040817

Start: 266040

End: 267173

Strand: Reverse

Name: fni [H]

Synonym: Cmaq_0231

Alternate gene names: 159040817

Gene position: 267173-266040 (Counterclockwise)

Preceding gene: 159040818

Following gene: 159040816

Centisome position: 12.86

GC content: 43.03

Gene sequence:

>1134_bases
ATGATTGGGGGTCGTAAGGATGAGCATATTAGGATTGCTTCAAGTAGTGATGTTGAGGTTGGTGATTCATTGTTTGATGG
TGTTCAATTAATTCACAATGCTTTACCGGAGATGGATTTTAATGATGTTGACTCAACCATTGAATTGTTTAATAAGAGGC
TTAGCTTCCCATTCATAATAGGTGCCTTAACCGGTGGTACTGAGACTGCTGGTAGGGTTAATGCTGTTTTAGCCAAGGCC
GCTGAGGAGTTTGGGATAGGCATGTATGTTGGTTCACAGAGGATAGCATTAATGAAGCCTGAGACCGCTTGGAGCTTCAG
GGTTGTTAAGGATAATGCACCAAGCGCCCTAAAAATAGCCAACCTAGGTGCACCCCAGGTTTCTAGGCTTAGTGATAGGG
ATTTAGTGGATTGGGTTAATGAGGCAGTGGATATGATTAACGCTGATGCAGTGGCAATACACCTTAATCCAGCACAGGAA
TTATTCCAACCTGAGGGTGAGCCATGGTTCAGCGGTGTCTTAGGTAAGTTGAAGCTCATTAGGAGGGTTGTTAATAGGCC
TTTAATAATTAAGGAGGTTGGTAATGGTGTATCCATGGAGGTTGCTAGAATGCTTAACAGTATTCCACCCGATGCAATTG
ATGTCGCCGGCCACGGTGGCACATCATTCATTAGGATTGAGGCAATTAGGGGTGGTGAATTAAGTAAGGCTGATGTGTTT
AGGGATTGGGGTATACCCACTGTATTATCCATTTGCGAAGTGAGCAGTGTCTACGATGGTGTGATAATAGCCTCTGGTGG
TGTTAGGAATGGTTTAGATGGTGCTAAGGCAATAGCCCTAGGTGCAGATGCATTCACAATGTCAAGACCAATGCTGGTAT
CGGCATTAAAGGGTTATGAGGCAGTGAGGGAGTTGATTAATAAGTTAATGTGGGAGTTCAAGGCAACAATGTTCCTAACA
GGATCAAGGAGAGTGGAGGACTTAAAGAAAACACCAGTAGTAGCAAACCTACCAATACTACTATGGCTAATACAAAGAGG
AGTAAAATGCAAACTAACAACAAACATATACAACCAAATAAAACCAATAGCCTCAATGCTCATTAATAAGGTGTTCAACA
CCACGGAGCACTAG

Upstream 100 bases:

>100_bases
GTCTTAACATTAATATTCATGAAGCTTAAGGCTTCTTATTCGATAAACTATTCCAGATACCTAACAAAGTTTATTAGGGT
ATTGATTGAAACTATTTTGG

Downstream 100 bases:

>100_bases
AGCTAATAATGTTCCTTAGGCTACTTGTGGATTCAGTTATCAGGTGTTTCATATGGCATGAATATAATTTAACAATATTT
AAACTTACACCTGTTTTACT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MIGGRKDEHIRIASSSDVEVGDSLFDGVQLIHNALPEMDFNDVDSTIELFNKRLSFPFIIGALTGGTETAGRVNAVLAKA
AEEFGIGMYVGSQRIALMKPETAWSFRVVKDNAPSALKIANLGAPQVSRLSDRDLVDWVNEAVDMINADAVAIHLNPAQE
LFQPEGEPWFSGVLGKLKLIRRVVNRPLIIKEVGNGVSMEVARMLNSIPPDAIDVAGHGGTSFIRIEAIRGGELSKADVF
RDWGIPTVLSICEVSSVYDGVIIASGGVRNGLDGAKAIALGADAFTMSRPMLVSALKGYEAVRELINKLMWEFKATMFLT
GSRRVEDLKKTPVVANLPILLWLIQRGVKCKLTTNIYNQIKPIASMLINKVFNTTEH

Sequences:

>Translated_377_residues
MIGGRKDEHIRIASSSDVEVGDSLFDGVQLIHNALPEMDFNDVDSTIELFNKRLSFPFIIGALTGGTETAGRVNAVLAKA
AEEFGIGMYVGSQRIALMKPETAWSFRVVKDNAPSALKIANLGAPQVSRLSDRDLVDWVNEAVDMINADAVAIHLNPAQE
LFQPEGEPWFSGVLGKLKLIRRVVNRPLIIKEVGNGVSMEVARMLNSIPPDAIDVAGHGGTSFIRIEAIRGGELSKADVF
RDWGIPTVLSICEVSSVYDGVIIASGGVRNGLDGAKAIALGADAFTMSRPMLVSALKGYEAVRELINKLMWEFKATMFLT
GSRRVEDLKKTPVVANLPILLWLIQRGVKCKLTTNIYNQIKPIASMLINKVFNTTEH
>Mature_377_residues
MIGGRKDEHIRIASSSDVEVGDSLFDGVQLIHNALPEMDFNDVDSTIELFNKRLSFPFIIGALTGGTETAGRVNAVLAKA
AEEFGIGMYVGSQRIALMKPETAWSFRVVKDNAPSALKIANLGAPQVSRLSDRDLVDWVNEAVDMINADAVAIHLNPAQE
LFQPEGEPWFSGVLGKLKLIRRVVNRPLIIKEVGNGVSMEVARMLNSIPPDAIDVAGHGGTSFIRIEAIRGGELSKADVF
RDWGIPTVLSICEVSSVYDGVIIASGGVRNGLDGAKAIALGADAFTMSRPMLVSALKGYEAVRELINKLMWEFKATMFLT
GSRRVEDLKKTPVVANLPILLWLIQRGVKCKLTTNIYNQIKPIASMLINKVFNTTEH

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 41054; Mature: 41054

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGRKDEHIRIASSSDVEVGDSLFDGVQLIHNALPEMDFNDVDSTIELFNKRLSFPFII
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEE
GALTGGTETAGRVNAVLAKAAEEFGIGMYVGSQRIALMKPETAWSFRVVKDNAPSALKIA
EEECCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEEEEEEECCCCCEEEEE
NLGAPQVSRLSDRDLVDWVNEAVDMINADAVAIHLNPAQELFQPEGEPWFSGVLGKLKLI
CCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHH
RRVVNRPLIIKEVGNGVSMEVARMLNSIPPDAIDVAGHGGTSFIRIEAIRGGELSKADVF
HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCHHHHH
RDWGIPTVLSICEVSSVYDGVIIASGGVRNGLDGAKAIALGADAFTMSRPMLVSALKGYE
HHCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHEEEECCCHHHHCCHHHHHHHHHHH
AVRELINKLMWEFKATMFLTGSRRVEDLKKTPVVANLPILLWLIQRGVKCKLTTNIYNQI
HHHHHHHHHHHHHHHHEEEECCHHHHHHHHCCCEECHHHHHHHHHCCCEEEEEHHHHHHH
KPIASMLINKVFNTTEH
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGGRKDEHIRIASSSDVEVGDSLFDGVQLIHNALPEMDFNDVDSTIELFNKRLSFPFII
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEE
GALTGGTETAGRVNAVLAKAAEEFGIGMYVGSQRIALMKPETAWSFRVVKDNAPSALKIA
EEECCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEEEEEEECCCCCEEEEE
NLGAPQVSRLSDRDLVDWVNEAVDMINADAVAIHLNPAQELFQPEGEPWFSGVLGKLKLI
CCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHH
RRVVNRPLIIKEVGNGVSMEVARMLNSIPPDAIDVAGHGGTSFIRIEAIRGGELSKADVF
HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCHHHHH
RDWGIPTVLSICEVSSVYDGVIIASGGVRNGLDGAKAIALGADAFTMSRPMLVSALKGYE
HHCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHEEEECCCHHHHCCHHHHHHHHHHH
AVRELINKLMWEFKATMFLTGSRRVEDLKKTPVVANLPILLWLIQRGVKCKLTTNIYNQI
HHHHHHHHHHHHHHHHEEEECCHHHHHHHHCCCEECHHHHHHHHHCCCEEEEEHHHHHHH
KPIASMLINKVFNTTEH
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA