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The map label for this gene is 159040633

Identifier: 159040633

GI number: 159040633

Start: 56167

End: 57486

Strand: Reverse

Name: 159040633

Synonym: Cmaq_0041

Alternate gene names: NA

Gene position: 57486-56167 (Counterclockwise)

Preceding gene: 159040635

Following gene: 159040632

Centisome position: 2.77

GC content: 41.14

Gene sequence:

>1320_bases
GTGGATCAAGTTAAGCTTAATGGTGGTGAGTATGTTAGAGTAGAAGGACCCGCAATGATTGAGGTTTTAAGAGGCAAACT
CTACATCCTTGGGGCACAGTATGATGAGGGTTCAAGAATAACAATATTACGGGCTAGGAGGGTTGTTGCTAAGGCTATTA
ATGATACTGAGTTATCAGTGGTCCTTGGGCCGGGAGGCTTCGTGGATAAGCCTAAGGCTGGTGAGGAGATGATTGATGAA
TGGGATAGTAAATTATCAATGGGATTAAAGGGTTCAGTAATAATGGTGATGGGGGCTATGGATTCCGGTAAAACAACCAT
AACGACAATACTTGTTAATAAGGCATCATCAATGGGATTAAAGGTGGGTGTGGTTGATGCTGACCCAGGTCAAAATGACC
TAGGACCCCCCACCACTGTGTCCTGCTCAATACTCAAGGGTGGTAAGATAACTCACTTAAGCTACATGAGTCCGGTGAAG
CAGGTGTTCCTAGGCTCAACTAATCTTGAGGGTAATTGGTATAGGGCGGTTTACGGGGTAGCTAAGCTAGTGGATTACTT
AAAGAATATTGAATCAGTGGACTTCATTGTAATTAACACTGATGGATGGGTTGAGGGTGAGGGGGCTGTTGAGTACAAGA
GGGCTTTGGTTAATGCCATTAAGCCTAACTACGTCATAATCATGAGGAAGAGTGATGAGGTTAATGGTTTAATTAATGGA
TTAGGTATAGGCAATATGCTTATTCTCAATGCGCCACCATCAATGAGAATTAGGGATAGGAATGATAGGAAGATACACAG
GGATATGGGGTATGGTAGGTACTTGTCACCATCAAGGGAATTAACCCTTAACCTAACTCAAGTACCAGTGGTTAACATGC
CTTTAACCGGTAGGGGATTAAACGGTAACCTAGCTAGATTAATATCAAGTTACCTCAAGGTTAAGCCAATTTACATGGAT
TCCTTAAAGAACATGGTAATGGTGGTGTCAAGTATGGTTAAGGAACCAATGCTTAGAAGCATACCAGGTGGTGTTGCAGT
ACTGCTTCAACCCAATTGGGAAAATGGATTATTAGTAGGCTTGGAGGATAAGGATGGATTCTTAATAACGTTGGCCGTAT
TAAGGAGAATTTACTATAATAATGGAAGAATAGTCGTCACAGTGCCTAAGAGGTTAAGTAACTTTGAGCTTAATAACATA
AGGGGAATTAGGGTTGGTTCCATAAGAGTTAATGAACAGTTCGAGGAGATTGATAAATTCAGTGTAATATATAAGATTGA
GAGAATTATTAGCGAGAACGGTGCAAACCCCTTAACTTAA

Upstream 100 bases:

>100_bases
GATTAAGGCCGGTAGTGAAAATGATGGAGGCGCTTATTGGTAAGAGGTTAAGTATAAATATTGTAATAGTCTTTTTAAGG
AGTAGTGTATTATAGGAGGC

Downstream 100 bases:

>100_bases
CCCGAATAGAAGCGAATGATCCTCCCTCAACCTTTAAGAGACAGGTCCTGTATAGAGGTCTTGTGCATTCATCCTGTTAG
GAATACTATAGGGGATATGC

Product: hypothetical protein

Products: NA

Alternate protein names: Polynucleotide kinase MJ1315 [H]

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MDQVKLNGGEYVRVEGPAMIEVLRGKLYILGAQYDEGSRITILRARRVVAKAINDTELSVVLGPGGFVDKPKAGEEMIDE
WDSKLSMGLKGSVIMVMGAMDSGKTTITTILVNKASSMGLKVGVVDADPGQNDLGPPTTVSCSILKGGKITHLSYMSPVK
QVFLGSTNLEGNWYRAVYGVAKLVDYLKNIESVDFIVINTDGWVEGEGAVEYKRALVNAIKPNYVIIMRKSDEVNGLING
LGIGNMLILNAPPSMRIRDRNDRKIHRDMGYGRYLSPSRELTLNLTQVPVVNMPLTGRGLNGNLARLISSYLKVKPIYMD
SLKNMVMVVSSMVKEPMLRSIPGGVAVLLQPNWENGLLVGLEDKDGFLITLAVLRRIYYNNGRIVVTVPKRLSNFELNNI
RGIRVGSIRVNEQFEEIDKFSVIYKIERIISENGANPLT

Sequences:

>Translated_439_residues
MDQVKLNGGEYVRVEGPAMIEVLRGKLYILGAQYDEGSRITILRARRVVAKAINDTELSVVLGPGGFVDKPKAGEEMIDE
WDSKLSMGLKGSVIMVMGAMDSGKTTITTILVNKASSMGLKVGVVDADPGQNDLGPPTTVSCSILKGGKITHLSYMSPVK
QVFLGSTNLEGNWYRAVYGVAKLVDYLKNIESVDFIVINTDGWVEGEGAVEYKRALVNAIKPNYVIIMRKSDEVNGLING
LGIGNMLILNAPPSMRIRDRNDRKIHRDMGYGRYLSPSRELTLNLTQVPVVNMPLTGRGLNGNLARLISSYLKVKPIYMD
SLKNMVMVVSSMVKEPMLRSIPGGVAVLLQPNWENGLLVGLEDKDGFLITLAVLRRIYYNNGRIVVTVPKRLSNFELNNI
RGIRVGSIRVNEQFEEIDKFSVIYKIERIISENGANPLT
>Mature_439_residues
MDQVKLNGGEYVRVEGPAMIEVLRGKLYILGAQYDEGSRITILRARRVVAKAINDTELSVVLGPGGFVDKPKAGEEMIDE
WDSKLSMGLKGSVIMVMGAMDSGKTTITTILVNKASSMGLKVGVVDADPGQNDLGPPTTVSCSILKGGKITHLSYMSPVK
QVFLGSTNLEGNWYRAVYGVAKLVDYLKNIESVDFIVINTDGWVEGEGAVEYKRALVNAIKPNYVIIMRKSDEVNGLING
LGIGNMLILNAPPSMRIRDRNDRKIHRDMGYGRYLSPSRELTLNLTQVPVVNMPLTGRGLNGNLARLISSYLKVKPIYMD
SLKNMVMVVSSMVKEPMLRSIPGGVAVLLQPNWENGLLVGLEDKDGFLITLAVLRRIYYNNGRIVVTVPKRLSNFELNNI
RGIRVGSIRVNEQFEEIDKFSVIYKIERIISENGANPLT

Specific function: Polynucleotide kinase that can phosphorylate the 5'- hydroxyl groups of both single-stranded RNA (ssRNA) and single- stranded DNA (ssDNA). Exhibits a strong preference for ssRNA [H]

COG id: COG1341

COG function: function code R; Predicted GTPase or GTP-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: =2.7.1.78 [H]

Molecular weight: Translated: 48377; Mature: 48377

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00045 HISTONE_LIKE ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQVKLNGGEYVRVEGPAMIEVLRGKLYILGAQYDEGSRITILRARRVVAKAINDTELSV
CCEEEECCCCEEEECCCHHEEEECCEEEEEEEEECCCCEEEEEEHHHHHHHHCCCCEEEE
VLGPGGFVDKPKAGEEMIDEWDSKLSMGLKGSVIMVMGAMDSGKTTITTILVNKASSMGL
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCE
KVGVVDADPGQNDLGPPTTVSCSILKGGKITHLSYMSPVKQVFLGSTNLEGNWYRAVYGV
EEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHH
AKLVDYLKNIESVDFIVINTDGWVEGEGAVEYKRALVNAIKPNYVIIMRKSDEVNGLING
HHHHHHHHCCCCCEEEEECCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHC
LGIGNMLILNAPPSMRIRDRNDRKIHRDMGYGRYLSPSRELTLNLTQVPVVNMPLTGRGL
CCCCCEEEEECCCCCEEECCCCCHHHHHCCCCCCCCCCCEEEEEEEECCEEECCCCCCCC
NGNLARLISSYLKVKPIYMDSLKNMVMVVSSMVKEPMLRSIPGGVAVLLQPNWENGLLVG
CCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEE
LEDKDGFLITLAVLRRIYYNNGRIVVTVPKRLSNFELNNIRGIRVGSIRVNEQFEEIDKF
EECCCCEEEEHHHHHHHEECCCEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHHHHHHH
SVIYKIERIISENGANPLT
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDQVKLNGGEYVRVEGPAMIEVLRGKLYILGAQYDEGSRITILRARRVVAKAINDTELSV
CCEEEECCCCEEEECCCHHEEEECCEEEEEEEEECCCCEEEEEEHHHHHHHHCCCCEEEE
VLGPGGFVDKPKAGEEMIDEWDSKLSMGLKGSVIMVMGAMDSGKTTITTILVNKASSMGL
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCE
KVGVVDADPGQNDLGPPTTVSCSILKGGKITHLSYMSPVKQVFLGSTNLEGNWYRAVYGV
EEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHH
AKLVDYLKNIESVDFIVINTDGWVEGEGAVEYKRALVNAIKPNYVIIMRKSDEVNGLING
HHHHHHHHCCCCCEEEEECCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHC
LGIGNMLILNAPPSMRIRDRNDRKIHRDMGYGRYLSPSRELTLNLTQVPVVNMPLTGRGL
CCCCCEEEEECCCCCEEECCCCCHHHHHCCCCCCCCCCCEEEEEEEECCEEECCCCCCCC
NGNLARLISSYLKVKPIYMDSLKNMVMVVSSMVKEPMLRSIPGGVAVLLQPNWENGLLVG
CCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEE
LEDKDGFLITLAVLRRIYYNNGRIVVTVPKRLSNFELNNIRGIRVGSIRVNEQFEEIDKF
EECCCCEEEEHHHHHHHEECCCEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHHHHHHH
SVIYKIERIISENGANPLT
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]