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The map label for this gene is cph2 [H]

Identifier: 158425538

GI number: 158425538

Start: 4474161

End: 4475081

Strand: Reverse

Name: cph2 [H]

Synonym: AZC_3914

Alternate gene names: 158425538

Gene position: 4475081-4474161 (Counterclockwise)

Preceding gene: 158425541

Following gene: 158425537

Centisome position: 83.34

GC content: 68.3

Gene sequence:

>921_bases
ATGATCGCGTCCCCGCCCGATCTGATCGCAAAACTGGCGCTCTATTCTATAGACGCCATCGCCGACATGATCGTCTGGGC
CGACCGCGAGGGCCGCTATGTGTGCGTCAACAAGGCGGCGCAGCGGCTCCTCGGCTATACGGAGGAGGAGTTCCAGGGGC
GCCGGGTCTGCGACGTGGACCCCCTGTTCGACGAGGCCCGCTGGCGGGAGCACTGGGCGGAACTGGAACGGCTCGGCTCC
GTCACGCTGGAGACGGTGAACACGACCAAGGACGGCGTCGATGTTCCCGTCGAGGTCACGGCCAATCTGGTTTCCGTGGA
CGGGCGGCTGTTCAACTGTTCCATCGTGCGCGACATCACCGAGCGCCGGCGCAACGAGGCCGAGCGCCGGGCGCTGAACG
AGCGCATCTACCAGCTCAGCATCACGGACGGGCTCACCGGCATCAGCAACCGCCGGCGCTTCGACGAAGCGCTCGCGAGC
CTCGTGGCCCAGCATGCGCGTTCGGGCAAGCCGCTGTCCGTGATCCTGATCGACATCGATCACTTCAAGGCCTTCAACGA
CCATTACGGCCACCTGAGCGGCGACGACTGCCTGCGGCAGGTGGCGGCGGTCATCGCGTCGCTGATGCGGGGCGAGAGCG
ACCTTGCCGCCCGCTTCGGTGGCGAGGAGTTCGCCTGCGTCCTGCCCGGGCTCGACCTTGCCGGTGCGGCGAGCGTGGCG
GAGCGGCTGCGGTCCGGTATCGCGGGGCTGGGCATTCCCCATGCCAAGGCCGACGGTGGTCACGTGACGGCCAGCATCGG
CGCCGTGTGCTGCGAACGCCCCATGGCGCAGACCTCCCACGGCCTGTTGGCGACGGCGGATGCCTTGCTCTACCGCGCCA
AAGGGGAAGGGCGAAACCGCGTGGCCGTCGCCCGCCTCTGA

Upstream 100 bases:

>100_bases
CGGTATTCCGGGCAGCCCGCAAGCAGGTCCGGCGAAAATACTGGTTTTCAGGCGCTCATCAACGTTGCCGGGCGCGTCCC
TGTTGCTTCATGAGTGAGCC

Downstream 100 bases:

>100_bases
ACCCGGCGCGATCCAGCCCTTTGCCGCCGGGTGCGCCTGAACGCGAATTCCGGTAGAGGACTGCCTGTGCCCGATGTGCG
CATCGGGCCGGCGCCGCGAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIASPPDLIAKLALYSIDAIADMIVWADREGRYVCVNKAAQRLLGYTEEEFQGRRVCDVDPLFDEARWREHWAELERLGS
VTLETVNTTKDGVDVPVEVTANLVSVDGRLFNCSIVRDITERRRNEAERRALNERIYQLSITDGLTGISNRRRFDEALAS
LVAQHARSGKPLSVILIDIDHFKAFNDHYGHLSGDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVA
ERLRSGIAGLGIPHAKADGGHVTASIGAVCCERPMAQTSHGLLATADALLYRAKGEGRNRVAVARL

Sequences:

>Translated_306_residues
MIASPPDLIAKLALYSIDAIADMIVWADREGRYVCVNKAAQRLLGYTEEEFQGRRVCDVDPLFDEARWREHWAELERLGS
VTLETVNTTKDGVDVPVEVTANLVSVDGRLFNCSIVRDITERRRNEAERRALNERIYQLSITDGLTGISNRRRFDEALAS
LVAQHARSGKPLSVILIDIDHFKAFNDHYGHLSGDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVA
ERLRSGIAGLGIPHAKADGGHVTASIGAVCCERPMAQTSHGLLATADALLYRAKGEGRNRVAVARL
>Mature_306_residues
MIASPPDLIAKLALYSIDAIADMIVWADREGRYVCVNKAAQRLLGYTEEEFQGRRVCDVDPLFDEARWREHWAELERLGS
VTLETVNTTKDGVDVPVEVTANLVSVDGRLFNCSIVRDITERRRNEAERRALNERIYQLSITDGLTGISNRRRFDEALAS
LVAQHARSGKPLSVILIDIDHFKAFNDHYGHLSGDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVA
ERLRSGIAGLGIPHAKADGGHVTASIGAVCCERPMAQTSHGLLATADALLYRAKGEGRNRVAVARL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=284, Percent_Identity=32.7464788732394, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082007, Length=233, Percent_Identity=35.1931330472103, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=40.4907975460123, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786584, Length=227, Percent_Identity=31.7180616740088, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=301, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=36.5853658536585, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=33.7016574585635, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787816, Length=175, Percent_Identity=34.2857142857143, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=33.5329341317365, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=199, Percent_Identity=31.6582914572864, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=186, Percent_Identity=30.6451612903226, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=116, Percent_Identity=33.6206896551724, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 33363; Mature: 33363

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIASPPDLIAKLALYSIDAIADMIVWADREGRYVCVNKAAQRLLGYTEEEFQGRRVCDVD
CCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHCCCHHHHCCCCCCCCC
PLFDEARWREHWAELERLGSVTLETVNTTKDGVDVPVEVTANLVSVDGRLFNCSIVRDIT
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHEEEEECCEEEEHHHHHHHH
ERRRNEAERRALNERIYQLSITDGLTGISNRRRFDEALASLVAQHARSGKPLSVILIDID
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH
HFKAFNDHYGHLSGDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCHHHHHH
ERLRSGIAGLGIPHAKADGGHVTASIGAVCCERPMAQTSHGLLATADALLYRAKGEGRNR
HHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCCCCCC
VAVARL
EEEECC
>Mature Secondary Structure
MIASPPDLIAKLALYSIDAIADMIVWADREGRYVCVNKAAQRLLGYTEEEFQGRRVCDVD
CCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHCCCHHHHCCCCCCCCC
PLFDEARWREHWAELERLGSVTLETVNTTKDGVDVPVEVTANLVSVDGRLFNCSIVRDIT
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHEEEEECCEEEEHHHHHHHH
ERRRNEAERRALNERIYQLSITDGLTGISNRRRFDEALASLVAQHARSGKPLSVILIDID
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH
HFKAFNDHYGHLSGDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCHHHHHH
ERLRSGIAGLGIPHAKADGGHVTASIGAVCCERPMAQTSHGLLATADALLYRAKGEGRNR
HHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCCCCCC
VAVARL
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]