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The map label for this gene is trbF [H]

Identifier: 158425489

GI number: 158425489

Start: 4416680

End: 4417369

Strand: Direct

Name: trbF [H]

Synonym: AZC_3865

Alternate gene names: 158425489

Gene position: 4416680-4417369 (Clockwise)

Preceding gene: 158425488

Following gene: 158425490

Centisome position: 82.25

GC content: 64.78

Gene sequence:

>690_bases
ATGAACCTCTTCAAGCGACCTGCGACCCATTACGGAACGTCGCCCGAGCCGGTCACGCCCTATCAGAAGGCAGCTCAGGT
GTGGGACGAGCGCATCGGTTCGGCCCGTGTACAGGCGAAGAATTGGCGGCTGATGGCCTTTGGTAGCCTGTTCCTCTCAG
TCGGCTTTGCCTCCGTGCTTGTCTGGCAATCGACGAGGGGCACCGTCGTGCCCTGGGTGGTCGAGGTCGATCGCCTCGGC
CAGACGCAGGCCGTAGGGCCGGCCACCGGCGAGTATCGCCCAACCGATCCGCAGATTGCTTGGCATCTTGCCCGCTTCAT
CGAGCAGGTGCGCAGCCTGCCGGCCGATCCCGTGATTGTGCGGCAGAACTGGCTCAGGGCCTATGAGTTCACCACCGATC
GGGGTGCTGCCGCTCTTAACGACTATGCACGCGCCAATGATCCGTTCACGCGGGTCGGCAAGCAGCAGATCGCCGTCGAG
GTCTCCAGCGTGATCCGGGCCTCGCCGGATTCCTTCCGCGTCGCCTGGGTCGAGCGGCGCTATGAGAACGGCCAGCTCGC
CGCCACCGAGCGCTGGAGCGCGATCCTGACGCTGGTGATACAGCCACCGCGCGATGCCGAGCGCCTGCGCACCAATCCGC
TCGGCATCTATGTCAACGCCATCAGTTGGTCGCGGGAGATGAGCCAGTGA

Upstream 100 bases:

>100_bases
AGTCGCTTCGCCATGGCGTCTCCGCCGCCGCCCATGCTGTGCGCTCCGGTGACAGCCATGCCGGCGGCTCCTCCGTCTCC
CTCAATGAGAGCGACCGCTC

Downstream 100 bases:

>100_bases
ACATGTCTTTCCGTAAATCCACATCTCAGGCTCTGCGCCGATCCGCCTTTGCGGTTCTTCTGCTTTCGGCGACGATGTTG
GGCGGCTGCGCTTCGGCTCC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNLFKRPATHYGTSPEPVTPYQKAAQVWDERIGSARVQAKNWRLMAFGSLFLSVGFASVLVWQSTRGTVVPWVVEVDRLG
QTQAVGPATGEYRPTDPQIAWHLARFIEQVRSLPADPVIVRQNWLRAYEFTTDRGAAALNDYARANDPFTRVGKQQIAVE
VSSVIRASPDSFRVAWVERRYENGQLAATERWSAILTLVIQPPRDAERLRTNPLGIYVNAISWSREMSQ

Sequences:

>Translated_229_residues
MNLFKRPATHYGTSPEPVTPYQKAAQVWDERIGSARVQAKNWRLMAFGSLFLSVGFASVLVWQSTRGTVVPWVVEVDRLG
QTQAVGPATGEYRPTDPQIAWHLARFIEQVRSLPADPVIVRQNWLRAYEFTTDRGAAALNDYARANDPFTRVGKQQIAVE
VSSVIRASPDSFRVAWVERRYENGQLAATERWSAILTLVIQPPRDAERLRTNPLGIYVNAISWSREMSQ
>Mature_229_residues
MNLFKRPATHYGTSPEPVTPYQKAAQVWDERIGSARVQAKNWRLMAFGSLFLSVGFASVLVWQSTRGTVVPWVVEVDRLG
QTQAVGPATGEYRPTDPQIAWHLARFIEQVRSLPADPVIVRQNWLRAYEFTTDRGAAALNDYARANDPFTRVGKQQIAVE
VSSVIRASPDSFRVAWVERRYENGQLAATERWSAILTLVIQPPRDAERLRTNPLGIYVNAISWSREMSQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25899; Mature: 25899

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFKRPATHYGTSPEPVTPYQKAAQVWDERIGSARVQAKNWRLMAFGSLFLSVGFASVL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHHHHE
VWQSTRGTVVPWVVEVDRLGQTQAVGPATGEYRPTDPQIAWHLARFIEQVRSLPADPVIV
EEECCCCCEEHEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
RQNWLRAYEFTTDRGAAALNDYARANDPFTRVGKQQIAVEVSSVIRASPDSFRVAWVERR
HHHHHHHHEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHEEEHH
YENGQLAATERWSAILTLVIQPPRDAERLRTNPLGIYVNAISWSREMSQ
CCCCCEEHHHHHEEEEEEEECCCCCHHHHCCCCCEEEEEEEECCHHHCC
>Mature Secondary Structure
MNLFKRPATHYGTSPEPVTPYQKAAQVWDERIGSARVQAKNWRLMAFGSLFLSVGFASVL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHHHHE
VWQSTRGTVVPWVVEVDRLGQTQAVGPATGEYRPTDPQIAWHLARFIEQVRSLPADPVIV
EEECCCCCEEHEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
RQNWLRAYEFTTDRGAAALNDYARANDPFTRVGKQQIAVEVSSVIRASPDSFRVAWVERR
HHHHHHHHEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHEEEHH
YENGQLAATERWSAILTLVIQPPRDAERLRTNPLGIYVNAISWSREMSQ
CCCCCEEHHHHHEEEEEEEECCCCCHHHHCCCCCEEEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]