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The map label for this gene is nodC

Identifier: 158425440

GI number: 158425440

Start: 4370061

End: 4371254

Strand: Reverse

Name: nodC

Synonym: AZC_3816

Alternate gene names: 158425440

Gene position: 4371254-4370061 (Counterclockwise)

Preceding gene: 158425441

Following gene: 158425439

Centisome position: 81.4

GC content: 50.59

Gene sequence:

>1194_bases
ATGAGTGTCGTAGATGTGATCGGTTTGCTTGCGACTGCAGCCTACGTGACGTTGGCGAGCGCATACAAGGTGGTCCAGTT
CATTAACGTGTCGAGCGTAACGGATGTCGCTGGTCTCGAAAGTGATGCTTTGCCGCTCACTCCAAGGGTTGACGTTATCG
TGCCGACATTCAATGAGAACTCCAGCACATTGCTCGAGTGCGTCGCTTCTATATGCGCACAAGACTACCGCGGACCAATA
ACGATTGTCGTGGTAGACGATGGGTCGACCAACAAAACATCATTTCACGCAGTATGCGACAAGTACGCGAGCGACGAAAG
GTTCATATTTGTCGAACTTGATCAAAACAAGGGGAAGCGCGCCGCGCAAATGGAGGCCATCAGGAGAACAGACGGAGACC
TGATACTAAACGTAGACTCGGACACGGTTATAGATAAGGATGTTGTTACAAAGCTTGCGTCGTCCATGAGAGCCCCGAAT
GTCGGTGGTGTCATGGGGCAGCTCGTTGCAAAGAATCGAGAAAGATCTTGGCTTACCAGATTAATCGATATGGAGTACTG
GCTTGCGTGTAACGAGGAGCGCATTGCGCAGTCGAGGTTTGGCTCCGTGATGTGTTGTTGTGGGCCGTGCGCCATGTATA
GAAGATCTGCAATTACGCCACTATTGGCAGAATATGAGCACCAGACATTCCTAGGGCGTCCGAGCAACTTTGGTGAGGAT
CGCCATCTCACAATCCTGATGCTGAAGGCGGGATTTCGGACCGGGTACGTCCCAGGTGCCGTAGCGAGGACGTTGGTTCC
GGATGGGCTGGCGCCGTACCTGCGCCAGCAACTCCGCTGGGCCCGCAGCACTTATCGCGACACCGCCCTCGCCTTACGTA
TAAAGAAAAATCTAAGCAAATATATCACCTTTGAGATATGCGCACAGAATTTGGGTACGGCTCTCTTACTTGTGATGACC
ATGATTTCGCTTTCGCTGACTACATCAGGGTCGCAAACGCCCGTTATCATTCTGGGTGTCGTTGTGGGGATGTCTATAAT
AAGATGTTGTTCTGTCGCCCTTATAGCGAAAGATTTTCGGTTTCTATACTTCATCGTTCACTCAGCGTTGAATGTTCTAA
TTTTAACGCCGTTAAAACTCTATGCCCTGTTAACCATTCGGGATAGTCGGTGGCTATCACGCGAGAGTTCCTAA

Upstream 100 bases:

>100_bases
ACATTAGCGGCGCTCCGGTACGTCGTTCCAGCTCTTCAGGCGCGCGGATTTGCGCTTCAGCCGTTGCCATGAGGCGAGTC
GACAAGAAAAGAGATGCCAG

Downstream 100 bases:

>100_bases
AACATCAGTTAATTTGTGGGAAAAAGATGGAAGACCCTGATTTGGTAGCTACGAATCTGAGCCCCGCTGGCGTCAAGGAC
CTGCTTAGAAAGGATCTCGA

Product: N-acetylglucosaminyltransferase

Products: NA

Alternate protein names: Nodulation protein C

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSVVDVIGLLATAAYVTLASAYKVVQFINVSSVTDVAGLESDALPLTPRVDVIVPTFNENSSTLLECVASICAQDYRGPI
TIVVVDDGSTNKTSFHAVCDKYASDERFIFVELDQNKGKRAAQMEAIRRTDGDLILNVDSDTVIDKDVVTKLASSMRAPN
VGGVMGQLVAKNRERSWLTRLIDMEYWLACNEERIAQSRFGSVMCCCGPCAMYRRSAITPLLAEYEHQTFLGRPSNFGED
RHLTILMLKAGFRTGYVPGAVARTLVPDGLAPYLRQQLRWARSTYRDTALALRIKKNLSKYITFEICAQNLGTALLLVMT
MISLSLTTSGSQTPVIILGVVVGMSIIRCCSVALIAKDFRFLYFIVHSALNVLILTPLKLYALLTIRDSRWLSRESS

Sequences:

>Translated_397_residues
MSVVDVIGLLATAAYVTLASAYKVVQFINVSSVTDVAGLESDALPLTPRVDVIVPTFNENSSTLLECVASICAQDYRGPI
TIVVVDDGSTNKTSFHAVCDKYASDERFIFVELDQNKGKRAAQMEAIRRTDGDLILNVDSDTVIDKDVVTKLASSMRAPN
VGGVMGQLVAKNRERSWLTRLIDMEYWLACNEERIAQSRFGSVMCCCGPCAMYRRSAITPLLAEYEHQTFLGRPSNFGED
RHLTILMLKAGFRTGYVPGAVARTLVPDGLAPYLRQQLRWARSTYRDTALALRIKKNLSKYITFEICAQNLGTALLLVMT
MISLSLTTSGSQTPVIILGVVVGMSIIRCCSVALIAKDFRFLYFIVHSALNVLILTPLKLYALLTIRDSRWLSRESS
>Mature_396_residues
SVVDVIGLLATAAYVTLASAYKVVQFINVSSVTDVAGLESDALPLTPRVDVIVPTFNENSSTLLECVASICAQDYRGPIT
IVVVDDGSTNKTSFHAVCDKYASDERFIFVELDQNKGKRAAQMEAIRRTDGDLILNVDSDTVIDKDVVTKLASSMRAPNV
GGVMGQLVAKNRERSWLTRLIDMEYWLACNEERIAQSRFGSVMCCCGPCAMYRRSAITPLLAEYEHQTFLGRPSNFGEDR
HLTILMLKAGFRTGYVPGAVARTLVPDGLAPYLRQQLRWARSTYRDTALALRIKKNLSKYITFEICAQNLGTALLLVMTM
ISLSLTTSGSQTPVIILGVVVGMSIIRCCSVALIAKDFRFLYFIVHSALNVLILTPLKLYALLTIRDSRWLSRESS

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family

Homologues:

Organism=Homo sapiens, GI20302153, Length=283, Percent_Identity=31.4487632508834, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI4885391, Length=387, Percent_Identity=24.8062015503876, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI167466171, Length=278, Percent_Identity=28.7769784172662, Blast_Score=109, Evalue=5e-24,
Organism=Escherichia coli, GI1787259, Length=268, Percent_Identity=27.9850746268657, Blast_Score=82, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI86561407, Length=239, Percent_Identity=25.9414225941423, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6319497, Length=274, Percent_Identity=26.2773722627737, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODC_AZOC5 (Q07755)

Other databases:

- EMBL:   L18897
- EMBL:   AP009384
- PIR:   JQ0396
- RefSeq:   YP_001526732.1
- ProteinModelPortal:   Q07755
- SMR:   Q07755
- GeneID:   5688807
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3816
- HOGENOM:   HBG334849
- OMA:   LDQYETQ
- ProtClustDB:   CLSK864445
- BioCyc:   ACAU438753:AZC_3816-MONOMER
- GO:   GO:0009877
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: NA

Molecular weight: Translated: 43835; Mature: 43703

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVDVIGLLATAAYVTLASAYKVVQFINVSSVTDVAGLESDALPLTPRVDVIVPTFNEN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCC
SSTLLECVASICAQDYRGPITIVVVDDGSTNKTSFHAVCDKYASDERFIFVELDQNKGKR
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCH
AAQMEAIRRTDGDLILNVDSDTVIDKDVVTKLASSMRAPNVGGVMGQLVAKNRERSWLTR
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
LIDMEYWLACNEERIAQSRFGSVMCCCGPCAMYRRSAITPLLAEYEHQTFLGRPSNFGED
HHHHHHHEECCHHHHHHHHCCCEEEECCHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCC
RHLTILMLKAGFRTGYVPGAVARTLVPDGLAPYLRQQLRWARSTYRDTALALRIKKNLSK
CCEEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YITFEICAQNLGTALLLVMTMISLSLTTSGSQTPVIILGVVVGMSIIRCCSVALIAKDFR
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FLYFIVHSALNVLILTPLKLYALLTIRDSRWLSRESS
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SVVDVIGLLATAAYVTLASAYKVVQFINVSSVTDVAGLESDALPLTPRVDVIVPTFNEN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCC
SSTLLECVASICAQDYRGPITIVVVDDGSTNKTSFHAVCDKYASDERFIFVELDQNKGKR
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCH
AAQMEAIRRTDGDLILNVDSDTVIDKDVVTKLASSMRAPNVGGVMGQLVAKNRERSWLTR
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
LIDMEYWLACNEERIAQSRFGSVMCCCGPCAMYRRSAITPLLAEYEHQTFLGRPSNFGED
HHHHHHHEECCHHHHHHHHCCCEEEECCHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCC
RHLTILMLKAGFRTGYVPGAVARTLVPDGLAPYLRQQLRWARSTYRDTALALRIKKNLSK
CCEEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YITFEICAQNLGTALLLVMTMISLSLTTSGSQTPVIILGVVVGMSIIRCCSVALIAKDFR
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FLYFIVHSALNVLILTPLKLYALLTIRDSRWLSRESS
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2615763; 8146173