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The map label for this gene is cydA [H]

Identifier: 158425383

GI number: 158425383

Start: 4312743

End: 4314179

Strand: Direct

Name: cydA [H]

Synonym: AZC_3759

Alternate gene names: 158425383

Gene position: 4312743-4314179 (Clockwise)

Preceding gene: 158425382

Following gene: 158425384

Centisome position: 80.32

GC content: 65.14

Gene sequence:

>1437_bases
ATGTTCGGCCTGACTGCGCTCGAACTGGCCCGCATCCAGTTCGGATTCACCGTCTCCTTCCACATCATCTTCCCGGCCAT
CACCATCGGGCTTGCCAGCTATCTGGCGGTGCTGGAGGCCATGTGGCTGCTGCGCAAGGACGAGACCTACCGTGAGCTCT
ATTTCTTCTGGTCCAAGGTGTTCGCCGTGAACTTCGCCATGGGCGTCGTCTCCGGTCTCGTCATGGCCTATCAGTTCGGC
ACCAACTGGAGCTATTTCTCCAGCTTCGCCGGCGGCGTCACCGGCCCGCTCCTCGCCTATGAGGTACTCACCGCCTTCTT
CCTGGAAGCGGGCTTTCTGGGCGTGATGCTGTTCGGCTGGAACAAGGTGGGGCCGGGGCTGCATTTCTTCGCCACCGTCA
TGGTGGCGGTGGGCACCCTCATCTCCGCAACCTGGATCCTCGCCTCCAATTCCTGGATGCAGACGCCGCAGGGCTTCGAG
ATCATCAACGGGCGCGTGGTGCCGGTGGACTGGCTGAAGGTCATCTTCAATCCCTCCTTCCCCTATCGCCTCGTGCACAT
GACGCTGGCCGCCTATCTCGCCACCGCTCTGTTCGTCGCGGCCTCGGGGGCGTGGCATCTCATGAAGGGTCACCGCACGC
CCGCCATTCGCACCATGTTCTCCATGGCGCTCTGGATGCTGCTGTTTACCGCGCCGCTCCAGATCCTTGCGGGCGATCAG
CACGGACTCAATACGCTGGAGCACCAGCCGGCCAAGATCGCTGCTATGGAAGGCCACTGGGAGCGCACGCCCGGCGAGGC
GGTGCCGCTCATCCTGTTCGGCTGGCCGGACCTGGCGGCGGAGACCACCCGCTGGGCGGTGGAGGTGCCGCATCTGGGCA
GCCTCATCCTCACCCATAGCTGGGACGGGCAGATCCCGGCCCTCAAGGATTTTCCGCCCGAGGACCGGCCCAATTCGACG
GTCATCTTCTGGACCTTCCGCATCATGGTGGGGCTCGGAATGCTGATGCTGGCGCTCGGAGCTCTCGGCCTGCTGCAGCG
CCTGCGCGGGAAGCTCCATGACAGCGTTCTGCTCCAGCGCTTCGCCCTCGTCATGGGGCCGTCGGGCCTCATCGCCATCC
TTGCCGGGTGGATCACCACGGAGATGGGGCGCCAGCCCTATGTGGTCTATGGCGTCATGCGCACGGCGGATGCGGTCTCC
AACCATTCGGCGCTGGCGCTGAGCACCACGCTGGTGCTGTTCATCATCATGTATTTCTTCGTCTTCGGGATCGGCGTCAC
CTACATGCTGAAGCTCGTGGGCAAGGGCCCGGGCCATGGCGGGCCGGCCGAACCGGAACGGGCCGATCCCGCGGCCGATA
CCGGGCGCAACCAGCGCCCGTCCCGCCCGCTCTCGGCCGCGCCCGGGGCTGTCCTCTCGATCGGCCATGGAGAGTGA

Upstream 100 bases:

>100_bases
TCATGAGCGTGCGCTGCCCCCAGACGCCACGCGCCCTTGGCCATGCCTGGACGCATCCCCCACTCCGCCGCACCTGCGGC
CTTGATGCGGGAGCCTTGCC

Downstream 100 bases:

>100_bases
GCCATGAGCATGGGCATCGATCTCCCCCTCATCTGGGCCGTCATCATCGGCTTCGGCCTCATGATGTATGTCATCATGGA
CGGCTTCGACCTCGGCATCG

Product: cytochrome bd-type quinol oxidase subunit 1

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MFGLTALELARIQFGFTVSFHIIFPAITIGLASYLAVLEAMWLLRKDETYRELYFFWSKVFAVNFAMGVVSGLVMAYQFG
TNWSYFSSFAGGVTGPLLAYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFFATVMVAVGTLISATWILASNSWMQTPQGFE
IINGRVVPVDWLKVIFNPSFPYRLVHMTLAAYLATALFVAASGAWHLMKGHRTPAIRTMFSMALWMLLFTAPLQILAGDQ
HGLNTLEHQPAKIAAMEGHWERTPGEAVPLILFGWPDLAAETTRWAVEVPHLGSLILTHSWDGQIPALKDFPPEDRPNST
VIFWTFRIMVGLGMLMLALGALGLLQRLRGKLHDSVLLQRFALVMGPSGLIAILAGWITTEMGRQPYVVYGVMRTADAVS
NHSALALSTTLVLFIIMYFFVFGIGVTYMLKLVGKGPGHGGPAEPERADPAADTGRNQRPSRPLSAAPGAVLSIGHGE

Sequences:

>Translated_478_residues
MFGLTALELARIQFGFTVSFHIIFPAITIGLASYLAVLEAMWLLRKDETYRELYFFWSKVFAVNFAMGVVSGLVMAYQFG
TNWSYFSSFAGGVTGPLLAYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFFATVMVAVGTLISATWILASNSWMQTPQGFE
IINGRVVPVDWLKVIFNPSFPYRLVHMTLAAYLATALFVAASGAWHLMKGHRTPAIRTMFSMALWMLLFTAPLQILAGDQ
HGLNTLEHQPAKIAAMEGHWERTPGEAVPLILFGWPDLAAETTRWAVEVPHLGSLILTHSWDGQIPALKDFPPEDRPNST
VIFWTFRIMVGLGMLMLALGALGLLQRLRGKLHDSVLLQRFALVMGPSGLIAILAGWITTEMGRQPYVVYGVMRTADAVS
NHSALALSTTLVLFIIMYFFVFGIGVTYMLKLVGKGPGHGGPAEPERADPAADTGRNQRPSRPLSAAPGAVLSIGHGE
>Mature_478_residues
MFGLTALELARIQFGFTVSFHIIFPAITIGLASYLAVLEAMWLLRKDETYRELYFFWSKVFAVNFAMGVVSGLVMAYQFG
TNWSYFSSFAGGVTGPLLAYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFFATVMVAVGTLISATWILASNSWMQTPQGFE
IINGRVVPVDWLKVIFNPSFPYRLVHMTLAAYLATALFVAASGAWHLMKGHRTPAIRTMFSMALWMLLFTAPLQILAGDQ
HGLNTLEHQPAKIAAMEGHWERTPGEAVPLILFGWPDLAAETTRWAVEVPHLGSLILTHSWDGQIPALKDFPPEDRPNST
VIFWTFRIMVGLGMLMLALGALGLLQRLRGKLHDSVLLQRFALVMGPSGLIAILAGWITTEMGRQPYVVYGVMRTADAVS
NHSALALSTTLVLFIIMYFFVFGIGVTYMLKLVGKGPGHGGPAEPERADPAADTGRNQRPSRPLSAAPGAVLSIGHGE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=360, Percent_Identity=35.5555555555556, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI87081779, Length=360, Percent_Identity=34.4444444444444, Blast_Score=224, Evalue=7e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52399; Mature: 52399

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGLTALELARIQFGFTVSFHIIFPAITIGLASYLAVLEAMWLLRKDETYRELYFFWSKV
CCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FAVNFAMGVVSGLVMAYQFGTNWSYFSSFAGGVTGPLLAYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECC
NKVGPGLHFFATVMVAVGTLISATWILASNSWMQTPQGFEIINGRVVPVDWLKVIFNPSF
CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEECCEECHHHHHHHHHCCCC
PYRLVHMTLAAYLATALFVAASGAWHLMKGHRTPAIRTMFSMALWMLLFTAPLQILAGDQ
CHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
HGLNTLEHQPAKIAAMEGHWERTPGEAVPLILFGWPDLAAETTRWAVEVPHLGSLILTHS
CCCCHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHCCCCEEEECCCCCCEEEEEC
WDGQIPALKDFPPEDRPNSTVIFWTFRIMVGLGMLMLALGALGLLQRLRGKLHDSVLLQR
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALVMGPSGLIAILAGWITTEMGRQPYVVYGVMRTADAVSNHSALALSTTLVLFIIMYFF
HHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VFGIGVTYMLKLVGKGPGHGGPAEPERADPAADTGRNQRPSRPLSAAPGAVLSIGHGE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MFGLTALELARIQFGFTVSFHIIFPAITIGLASYLAVLEAMWLLRKDETYRELYFFWSKV
CCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FAVNFAMGVVSGLVMAYQFGTNWSYFSSFAGGVTGPLLAYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECC
NKVGPGLHFFATVMVAVGTLISATWILASNSWMQTPQGFEIINGRVVPVDWLKVIFNPSF
CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEECCEECHHHHHHHHHCCCC
PYRLVHMTLAAYLATALFVAASGAWHLMKGHRTPAIRTMFSMALWMLLFTAPLQILAGDQ
CHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
HGLNTLEHQPAKIAAMEGHWERTPGEAVPLILFGWPDLAAETTRWAVEVPHLGSLILTHS
CCCCHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHCCCCEEEECCCCCCEEEEEC
WDGQIPALKDFPPEDRPNSTVIFWTFRIMVGLGMLMLALGALGLLQRLRGKLHDSVLLQR
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALVMGPSGLIAILAGWITTEMGRQPYVVYGVMRTADAVSNHSALALSTTLVLFIIMYFF
HHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VFGIGVTYMLKLVGKGPGHGGPAEPERADPAADTGRNQRPSRPLSAAPGAVLSIGHGE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]