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The map label for this gene is sigK [H]

Identifier: 158425348

GI number: 158425348

Start: 4274677

End: 4275297

Strand: Direct

Name: sigK [H]

Synonym: AZC_3724

Alternate gene names: 158425348

Gene position: 4274677-4275297 (Clockwise)

Preceding gene: 158425346

Following gene: 158425349

Centisome position: 79.61

GC content: 71.34

Gene sequence:

>621_bases
ATGCCATGCCCCAACGTAGTTGTGCCCGATGAGCACCTGCGACACCCGGAGCCGCGCGCCGTGACGACCCAGACCGCGCC
CGCACGATCGGACGACCTGCGCGCCGCGCTGGAGGGTTGTGCGCGGCGCGATCCCGCCAGCCTGCGGCATCTCTATGAGC
GGCTCGCGCCCCAGATGATCGGCGTCGCCCTGCGCATGCTGCGCCGGCGCGATCTCGCCGAGGAGGTGGTGCACGACACT
TTCGTGCGGGTGTGGGAGCGGGCACGCAGCTTCGATCCCGAGCGGGGCGAGCCCGCAAGCTGGATCTTCGCCATCCTGCG
CAACCGCACGCTCGACGTGCTGCGGGGCGAGGCGCGCACGGAACTGGTCGAGGATTTCGAGCCCTATGCGCTCGCCGACG
AAACACAGGGGGCGGAGGACGCCATGGGCGCGCTGTCGCGGTCCGGCGCGCTGCGGCAGTGCCTTGAACGGCTGGAGCCG
CAGCGGCGGCAGGCGATCGTGCTCGCCTATACGCGCGGGCTCACCCATGGCGAACTGGCGGGACGGCTCGGCCTGCCGCT
CGGCACGGTGAAGTCCTGGATCCGCCGTGGCCTTCTGGCGCTGCGGGAGTGCATGGCATGA

Upstream 100 bases:

>100_bases
CTCCATTCTCAGGTCCGGCCCTGTCGGCGGGACGCGGCGGATACCCGGCGGGCGATGCGCCCGGATGCAGCGGAAAAATA
AAAATGCGCGCTGCATCCGT

Downstream 100 bases:

>100_bases
GCCCGCAGGATCGCGCGGCCCTCGCGGGCGAGTATGTGCTCGGGCTCGTGGACGGCGAGGAAGCTGCACGCTGCGCACGC
CTCGCCGAGACCGATCCCGC

Product: sigma-70 region 2

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MPCPNVVVPDEHLRHPEPRAVTTQTAPARSDDLRAALEGCARRDPASLRHLYERLAPQMIGVALRMLRRRDLAEEVVHDT
FVRVWERARSFDPERGEPASWIFAILRNRTLDVLRGEARTELVEDFEPYALADETQGAEDAMGALSRSGALRQCLERLEP
QRRQAIVLAYTRGLTHGELAGRLGLPLGTVKSWIRRGLLALRECMA

Sequences:

>Translated_206_residues
MPCPNVVVPDEHLRHPEPRAVTTQTAPARSDDLRAALEGCARRDPASLRHLYERLAPQMIGVALRMLRRRDLAEEVVHDT
FVRVWERARSFDPERGEPASWIFAILRNRTLDVLRGEARTELVEDFEPYALADETQGAEDAMGALSRSGALRQCLERLEP
QRRQAIVLAYTRGLTHGELAGRLGLPLGTVKSWIRRGLLALRECMA
>Mature_205_residues
PCPNVVVPDEHLRHPEPRAVTTQTAPARSDDLRAALEGCARRDPASLRHLYERLAPQMIGVALRMLRRRDLAEEVVHDTF
VRVWERARSFDPERGEPASWIFAILRNRTLDVLRGEARTELVEDFEPYALADETQGAEDAMGALSRSGALRQCLERLEPQ
RRQAIVLAYTRGLTHGELAGRLGLPLGTVKSWIRRGLLALRECMA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 23251; Mature: 23120

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCPNVVVPDEHLRHPEPRAVTTQTAPARSDDLRAALEGCARRDPASLRHLYERLAPQMI
CCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GVALRMLRRRDLAEEVVHDTFVRVWERARSFDPERGEPASWIFAILRNRTLDVLRGEART
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELVEDFEPYALADETQGAEDAMGALSRSGALRQCLERLEPQRRQAIVLAYTRGLTHGELA
HHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHH
GRLGLPLGTVKSWIRRGLLALRECMA
HHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PCPNVVVPDEHLRHPEPRAVTTQTAPARSDDLRAALEGCARRDPASLRHLYERLAPQMI
CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GVALRMLRRRDLAEEVVHDTFVRVWERARSFDPERGEPASWIFAILRNRTLDVLRGEART
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELVEDFEPYALADETQGAEDAMGALSRSGALRQCLERLEPQRRQAIVLAYTRGLTHGELA
HHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHH
GRLGLPLGTVKSWIRRGLLALRECMA
HHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA