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The map label for this gene is ihfB

Identifier: 158425340

GI number: 158425340

Start: 4263085

End: 4263369

Strand: Reverse

Name: ihfB

Synonym: AZC_3716

Alternate gene names: 158425340

Gene position: 4263369-4263085 (Counterclockwise)

Preceding gene: 158425341

Following gene: 158425339

Centisome position: 79.4

GC content: 64.21

Gene sequence:

>285_bases
ATGATCAAGTCTGAACTCGTGCAGAAGATTGCCGAAGCCAATCCGCACCTCTACCAGCGCGACGTCGAGAACATCGTCAA
CGCCATCCTCGACCAGATCGTGGATGCCCTGGCCCAGGGCGACCGCGTGGAACTGCGCGGCTTCGGCGCGTTCTCGGTGA
AGCAGCGTGAGGCCCGCACCGGCCGCAACCCGCGCACCGGCAAGCAGGTGGACGTGTCCTCCAAGGTCGTGCCCTATTTC
AAGACCGGCAAGGAGATGCGCGAGCGTCTCAACGGCGCGGCGTGA

Upstream 100 bases:

>100_bases
GTGCGGCCGTGGGCGGCGGCTAATCCTGGATCCTGCCCGGTCTGGGCGTTTCTCCGGGTCCATCCGTCTTCAGCCGGTCG
CGAGGGGAAGCAGTCGGGAC

Downstream 100 bases:

>100_bases
GCAGCGCACCCGTGGGACGCCTTCTCGCCGTCATCATCGGCCTTCCGGTCTCGGTGGCCATCGTCGCTCTGGCGGTGGCC
AATCGGCGCCCGGTGACGCT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREARTGRNPRTGKQVDVSSKVVPYF
KTGKEMRERLNGAA

Sequences:

>Translated_94_residues
MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREARTGRNPRTGKQVDVSSKVVPYF
KTGKEMRERLNGAA
>Mature_94_residues
MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREARTGRNPRTGKQVDVSSKVVPYF
KTGKEMRERLNGAA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=48.3516483516484, Blast_Score=103, Evalue=3e-24,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=41.7582417582418, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=38.6363636363636, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1788005, Length=78, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_AZOC5 (A8IN83)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001526632.1
- ProteinModelPortal:   A8IN83
- SMR:   A8IN83
- GeneID:   5690209
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3716
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- ProtClustDB:   PRK00199
- BioCyc:   ACAU438753:AZC_3716-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10525; Mature: 10525

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHC
GRNPRTGKQVDVSSKVVPYFKTGKEMRERLNGAA
CCCCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHC
GRNPRTGKQVDVSSKVVPYFKTGKEMRERLNGAA
CCCCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA