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The map label for this gene is dapF [H]

Identifier: 158425334

GI number: 158425334

Start: 4256552

End: 4257505

Strand: Reverse

Name: dapF [H]

Synonym: AZC_3710

Alternate gene names: 158425334

Gene position: 4257505-4256552 (Counterclockwise)

Preceding gene: 158425339

Following gene: 158425333

Centisome position: 79.29

GC content: 69.29

Gene sequence:

>954_bases
TTGCCACTCCCCATGGGTCAGCATTGCGACGGTAGGGGTGGCGCTTGCGCCGCCTCCCGCCATATAAGGTCGACAGTTTT
CTGGTGTCTGGACGCCGCTCCGATGCTTGCCCATCGCCCTTTTGTGAAGATGAACGGTCTCGGCAACGAGATTCTCGTGC
TCGACCTGCGCCACGAGCCGGAGGATGTGCCCGCCGCCGCGGCGCGCGCGCTCGCCCGTCCCGGCGTGCTGCCGTTCGAC
CAGGCGATGGTGCTCTATCCCCCGCGCCGCGCCGACACCGCCGCTTTCGTGCGCATTCTCAATTCCGATGGCTCGGAATC
GGGGGCCTGCGGCAACGGCACCCGCTGCATCGCGGCCTATGAGGCGGGCCGGATCGGTGAGCGGCACGTGCTGTTCGAGA
GCGCCGCCGGACTGCTGGACTGCGTGATGCAGCCGGACGGCCAGGTGACCGTGGACATGGGTGCTCCGCGCCTCGGCTGG
GATGCCATTCCGTTGGCCCGCCCCGTGGCGGACACCAGCGCCGTGCAGATCGAGGGTTTCGCGAGCCTTGGCCCCGCCAG
CATGGTCAGCATGGGCAATCCCCATGCCGTCTTCTTCGTGCCCGACGCCAACGCCGTGGACGTCGAGGCGCTCGGCGCGA
CGCTGGAGCATCACCCGCTGTTCCCCGAGCGCGCCAACATCTCCTTTGCTCAGGTGCTGAGCCCCGATCATATCCTGCTG
CATGTGTGGGAGCGCGGCGCAGGCCGCACCCGCGCCTGCGGCACTGCCGCTTGTGCCACCGGCGTCTCCACTGCCCGCAC
CGGCCGGACCGGTCGCAAGGTGCGCGTAACGCTGCCCGGCGGCGACCTCGTGATCGACTGGCGCGCCAGCGACGGCCACG
TGCTGATGACCGGCCCGGTGGCGCTGGAATTCACCGGCACGCTCACCTCCGACATGATCACCGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
CAGACCCGCAGCCTCGTCTGCGCGCATCGCGCTCTCCCTCAACTCACCGAACCGCCGCATCACTGCTCTAGCATGTTCGG
CGCCGCACCCAAGAGGGAGT

Downstream 100 bases:

>100_bases
GCATGGGGCAGGCGGGCGCGCGGGAGACGGAAGGCGTCGAGGTCGTCACCTTCGGCTGCCGGCTGAACACGCTCGACGGC
GCCGAGATCCAGCGCGCCGC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MPLPMGQHCDGRGGACAASRHIRSTVFWCLDAAPMLAHRPFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFD
QAMVLYPPRRADTAAFVRILNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGW
DAIPLARPVADTSAVQIEGFASLGPASMVSMGNPHAVFFVPDANAVDVEALGATLEHHPLFPERANISFAQVLSPDHILL
HVWERGAGRTRACGTAACATGVSTARTGRTGRKVRVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTLTSDMITEAA

Sequences:

>Translated_317_residues
MPLPMGQHCDGRGGACAASRHIRSTVFWCLDAAPMLAHRPFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFD
QAMVLYPPRRADTAAFVRILNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGW
DAIPLARPVADTSAVQIEGFASLGPASMVSMGNPHAVFFVPDANAVDVEALGATLEHHPLFPERANISFAQVLSPDHILL
HVWERGAGRTRACGTAACATGVSTARTGRTGRKVRVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTLTSDMITEAA
>Mature_316_residues
PLPMGQHCDGRGGACAASRHIRSTVFWCLDAAPMLAHRPFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQ
AMVLYPPRRADTAAFVRILNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGWD
AIPLARPVADTSAVQIEGFASLGPASMVSMGNPHAVFFVPDANAVDVEALGATLEHHPLFPERANISFAQVLSPDHILLH
VWERGAGRTRACGTAACATGVSTARTGRTGRKVRVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTLTSDMITEAA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=275, Percent_Identity=38.5454545454545, Blast_Score=175, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 33401; Mature: 33269

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPMGQHCDGRGGACAASRHIRSTVFWCLDAAPMLAHRPFVKMNGLGNEILVLDLRHEP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCEEEEEEECCCC
EDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRILNSDGSESGACGNGTRCIAAY
CCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHEEEEEECCCCCCCCCCCCCCEEEEEE
EAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGWDAIPLARPVADTSAVQIEGF
CCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECC
ASLGPASMVSMGNPHAVFFVPDANAVDVEALGATLEHHPLFPERANISFAQVLSPDHILL
CCCCCHHHHCCCCCEEEEEECCCCCEEHHHHCCCHHCCCCCCCCCCCCHHHHCCCCEEEE
HVWERGAGRTRACGTAACATGVSTARTGRTGRKVRVTLPGGDLVIDWRASDGHVLMTGPV
EEEECCCCCCCCCCHHHHHCCCCHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCE
ALEFTGTLTSDMITEAA
EEEEECCHHHHHHHHCC
>Mature Secondary Structure 
PLPMGQHCDGRGGACAASRHIRSTVFWCLDAAPMLAHRPFVKMNGLGNEILVLDLRHEP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCEEEEEEECCCC
EDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRILNSDGSESGACGNGTRCIAAY
CCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHEEEEEECCCCCCCCCCCCCCEEEEEE
EAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGWDAIPLARPVADTSAVQIEGF
CCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECC
ASLGPASMVSMGNPHAVFFVPDANAVDVEALGATLEHHPLFPERANISFAQVLSPDHILL
CCCCCHHHHCCCCCEEEEEECCCCCEEHHHHCCCHHCCCCCCCCCCCCHHHHCCCCEEEE
HVWERGAGRTRACGTAACATGVSTARTGRTGRKVRVTLPGGDLVIDWRASDGHVLMTGPV
EEEECCCCCCCCCCHHHHHCCCCHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCE
ALEFTGTLTSDMITEAA
EEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA