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The map label for this gene is rssA [H]

Identifier: 158425291

GI number: 158425291

Start: 4216719

End: 4217945

Strand: Direct

Name: rssA [H]

Synonym: AZC_3667

Alternate gene names: 158425291

Gene position: 4216719-4217945 (Clockwise)

Preceding gene: 158425285

Following gene: 158425294

Centisome position: 78.53

GC content: 68.3

Gene sequence:

>1227_bases
ATGGCCGCCTTGCATGACCACTCTATGACGGGATGCCGCACCGGGGGAACGGTGGCCGCCGCCCTCCCCGCTTTCCTAAA
GGAAGCATCTTGCCCGCCCTTCATTCCATTGCGGTGCGAACAAGGACACGCTTCCGTCATCAAAGAGCTTAGAGTGGGAG
CCAAGAACAAGCCGTGGCCTCCGCCACCGCGGCTGGAGGCGTTCATGTTTCAGGGGTTCAACCGCCGCTTTTTCGGCGGC
GAAGCACAGGCCGACATTCCGCTCGTGGCCGATGAGACCGTGGAGGCGCGCCCGGCCGCTCCTGCGAACACCCCGCGCAT
CGGACTGGCGCTTGGGGGCGGGGCGGCGCGCGGCTTTGCCCATATCGGCGTGCTGCGGACACTGGAAAAGCACGGCATCC
GCCCGGACGTGGTGGCCGGCACCTCCATCGGCGCGGTGGTCGGCGGGCTGTGGGCAGCGGGCAAGCTCGACCCGCTGGAG
GGCTGGGCCCGCAGCCTCAAGAAGCGCGACGTGCTCGGCATGCTGGACTTCACCTTCGGCTCCGCCGGCCTCATCGGGGG
GCGGCGGCTCGTCGATCTGATGCGCCGCCATGTGGAGCCGACCCGCATCGAGAGCCTGTCCACGGTCTTCGCCGCCATCG
CCACGGAGCTGGGCAGCGGCCACGAGATCTGGCTCACCCGTGGCGACCTCATCGAGGCGATCCACGCCAGCTACTGCCTG
CCGGGCATCTTCACGCCGGTGAAGGTGGGCGGGCGCTGGCTGATGGACGGCGCGCTGGTGAACCCCATCCCCGTCTCCGC
CGCCCGCGCCATGGGCGCGCGCATCGTGATCGCGGTGAACCTTAATTCGGATGTCTTCGGCAAGGGCGCGGTGATCCACG
ATCACGGCAGCATGCTGGAGACAGCAGAGGCGGCGCTGGCGGAAAAGCGGGCGCGTTTCTCGGGAATCCTGCGGCCGGAC
CGGCTGTTGCGGCGGCAGTTCTTCTCCGGCGCGCCGGACGGACCGAAGGGCATCTCGTCGGTGATGATCGATGCCTTCAA
CATCACCCAGGACCGCATCGCCCGCTCGCGGCTGGCGGGAGATCCGCCGGACGTCTCCATCTCGCCCAAGCTCGGCAAGA
TCGGCCTGTTCGAGTTCCAGCGCGCGGACGAGGCGATCGCCGCCGGCGCCGAGGCGGCGGAAAAGGTGATCGACGAACTC
AAGGAAGTGATGGTCGCCCTCGCCTGA

Upstream 100 bases:

>100_bases
CGAGATCGCTGGCGGGCCCGTCCGCCTCGGGCGTCATCGCAAGAGCCGTCGCCTCAGTCGCAGTCATGGAACACTTCCCC
TGTTTTGCACGCGGCGGACC

Downstream 100 bases:

>100_bases
GCTGTGCGCGGCCCAGGGGCATGGCGGCGGGAGCCCCGCCGCCGGCCGTTCAGGCGGTCATGATGTAATCGCGCAGTTGG
GCGCTCTCGCGCTCCATCTC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MAALHDHSMTGCRTGGTVAAALPAFLKEASCPPFIPLRCEQGHASVIKELRVGAKNKPWPPPPRLEAFMFQGFNRRFFGG
EAQADIPLVADETVEARPAAPANTPRIGLALGGGAARGFAHIGVLRTLEKHGIRPDVVAGTSIGAVVGGLWAAGKLDPLE
GWARSLKKRDVLGMLDFTFGSAGLIGGRRLVDLMRRHVEPTRIESLSTVFAAIATELGSGHEIWLTRGDLIEAIHASYCL
PGIFTPVKVGGRWLMDGALVNPIPVSAARAMGARIVIAVNLNSDVFGKGAVIHDHGSMLETAEAALAEKRARFSGILRPD
RLLRRQFFSGAPDGPKGISSVMIDAFNITQDRIARSRLAGDPPDVSISPKLGKIGLFEFQRADEAIAAGAEAAEKVIDEL
KEVMVALA

Sequences:

>Translated_408_residues
MAALHDHSMTGCRTGGTVAAALPAFLKEASCPPFIPLRCEQGHASVIKELRVGAKNKPWPPPPRLEAFMFQGFNRRFFGG
EAQADIPLVADETVEARPAAPANTPRIGLALGGGAARGFAHIGVLRTLEKHGIRPDVVAGTSIGAVVGGLWAAGKLDPLE
GWARSLKKRDVLGMLDFTFGSAGLIGGRRLVDLMRRHVEPTRIESLSTVFAAIATELGSGHEIWLTRGDLIEAIHASYCL
PGIFTPVKVGGRWLMDGALVNPIPVSAARAMGARIVIAVNLNSDVFGKGAVIHDHGSMLETAEAALAEKRARFSGILRPD
RLLRRQFFSGAPDGPKGISSVMIDAFNITQDRIARSRLAGDPPDVSISPKLGKIGLFEFQRADEAIAAGAEAAEKVIDEL
KEVMVALA
>Mature_407_residues
AALHDHSMTGCRTGGTVAAALPAFLKEASCPPFIPLRCEQGHASVIKELRVGAKNKPWPPPPRLEAFMFQGFNRRFFGGE
AQADIPLVADETVEARPAAPANTPRIGLALGGGAARGFAHIGVLRTLEKHGIRPDVVAGTSIGAVVGGLWAAGKLDPLEG
WARSLKKRDVLGMLDFTFGSAGLIGGRRLVDLMRRHVEPTRIESLSTVFAAIATELGSGHEIWLTRGDLIEAIHASYCLP
GIFTPVKVGGRWLMDGALVNPIPVSAARAMGARIVIAVNLNSDVFGKGAVIHDHGSMLETAEAALAEKRARFSGILRPDR
LLRRQFFSGAPDGPKGISSVMIDAFNITQDRIARSRLAGDPPDVSISPKLGKIGLFEFQRADEAIAAGAEAAEKVIDELK
EVMVALA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=186, Percent_Identity=34.4086021505376, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI116256487, Length=186, Percent_Identity=34.4086021505376, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI260656039, Length=186, Percent_Identity=34.4086021505376, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI260656043, Length=186, Percent_Identity=34.4086021505376, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI260656037, Length=186, Percent_Identity=34.4086021505376, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI148727290, Length=184, Percent_Identity=34.2391304347826, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI148727335, Length=184, Percent_Identity=34.2391304347826, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI226510936, Length=299, Percent_Identity=41.4715719063545, Blast_Score=218, Evalue=7e-58,
Organism=Caenorhabditis elegans, GI71997299, Length=170, Percent_Identity=31.1764705882353, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997289, Length=170, Percent_Identity=31.1764705882353, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204778, Length=182, Percent_Identity=31.3186813186813, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=217, Percent_Identity=31.7972350230415, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI28571388, Length=185, Percent_Identity=32.972972972973, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281376913, Length=185, Percent_Identity=32.972972972973, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 43327; Mature: 43195

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALHDHSMTGCRTGGTVAAALPAFLKEASCPPFIPLRCEQGHASVIKELRVGAKNKPWP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCC
PPPRLEAFMFQGFNRRFFGGEAQADIPLVADETVEARPAAPANTPRIGLALGGGAARGFA
CCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHH
HIGVLRTLEKHGIRPDVVAGTSIGAVVGGLWAAGKLDPLEGWARSLKKRDVLGMLDFTFG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHECCCC
SAGLIGGRRLVDLMRRHVEPTRIESLSTVFAAIATELGSGHEIWLTRGDLIEAIHASYCL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHC
PGIFTPVKVGGRWLMDGALVNPIPVSAARAMGARIVIAVNLNSDVFGKGAVIHDHGSMLE
CCCCCHHHCCCEEEECCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCHHH
TAEAALAEKRARFSGILRPDRLLRRQFFSGAPDGPKGISSVMIDAFNITQDRIARSRLAG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC
DPPDVSISPKLGKIGLFEFQRADEAIAAGAEAAEKVIDELKEVMVALA
CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AALHDHSMTGCRTGGTVAAALPAFLKEASCPPFIPLRCEQGHASVIKELRVGAKNKPWP
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCC
PPPRLEAFMFQGFNRRFFGGEAQADIPLVADETVEARPAAPANTPRIGLALGGGAARGFA
CCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHH
HIGVLRTLEKHGIRPDVVAGTSIGAVVGGLWAAGKLDPLEGWARSLKKRDVLGMLDFTFG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHECCCC
SAGLIGGRRLVDLMRRHVEPTRIESLSTVFAAIATELGSGHEIWLTRGDLIEAIHASYCL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHC
PGIFTPVKVGGRWLMDGALVNPIPVSAARAMGARIVIAVNLNSDVFGKGAVIHDHGSMLE
CCCCCHHHCCCEEEECCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCHHH
TAEAALAEKRARFSGILRPDRLLRRQFFSGAPDGPKGISSVMIDAFNITQDRIARSRLAG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC
DPPDVSISPKLGKIGLFEFQRADEAIAAGAEAAEKVIDELKEVMVALA
CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]