| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is 158425139
Identifier: 158425139
GI number: 158425139
Start: 4034408
End: 4035502
Strand: Reverse
Name: 158425139
Synonym: AZC_3515
Alternate gene names: NA
Gene position: 4035502-4034408 (Counterclockwise)
Preceding gene: 158425140
Following gene: 158425138
Centisome position: 75.15
GC content: 69.04
Gene sequence:
>1095_bases TTGCCGTCCTCTTGCAGTGGGGGAGAGCGCCGGGGCGCCGTTCCGGCTGATTGCTTGCTGATCAGGAGTTCTTTGATGAC CTTGTCGATCCTCCGCGCGGCGGGTCTTGCCTTTCTTGTAGCCGGCGGGTTGAACGCCGCTGCCTTTGCCCAGTCCGCTC CGCCGGCCAAGTCCGAGCCGGTCGTGTGGGAGCTGATTGACGAATATCCCGCCTCTGCCATTCCGGGGCAGGCGGACGCC ACCTTTGCGGCGGCGGTCGAGAAGGCGACGGGCGGCAAGCTGGTGATCCAGCCCATCCCCGATGCCAAGTCCGGCCTGCG CTCACGCGAGCAGCTGAAGGCGGTGAGCGAGGGACGCTTCGCCATGGCCGACAGCTTCGGCGGGGCGCTGGCCGAGGACA GCCCGCTGTTCCTCCTGTCCTCGCTGCCCTTCCTCACCGCCTCCGCCGACGAGGCGCGCCAGCTCTATGTGGCCGCCCGC CCGCTCTATGAGGCGGAATTCGCCCGGCGCGGGCAGAAACTGCTGTTCGTGACACCCTGGCCGCCTTCGGGCATCTGGTC GGCCGAGGCGGTCTCCAGCCCGGCGGCGCTCAAGGCGCTCAAGATCCGCACGTATGACCAGACCGGCGCGGAGCTTTTTG CCGCCACCTCCACCCGCGCGGCGGTGGTCTCCTTTTCCGACCTGATGCCCAAGCTCAAGACCGGCGAGTTCAATGCCGTG CTCTCCTCGGGCGACGGCGGCGCGGGGCGTGAGCTCTGGGTGCATGTGCGCCACTTCTCCCAGATCACCTATGCGGTGCC GCTGAGCTTCGGCACCGTCTCGCTCACCGCCTGGAACGCGCTTGATCCGCAGACGCAGGCGGCGGTGCTGCGCGCCGGCG AGGAGACGACGCAGGCGCAGTGGAAGGCCATGGAAGGGCGGGTCGCCGCCAACTACCAGCGCATGCGGGAAAATGGCGTC GTCATCGACGAAGCCCCGCCCGCGGCGGTCATGGACCTGCTGCGCACGGCGGCGTCCAAATCCATCGTGCGCTGGCGCAC GACCGTGACGCCGGAAGCGGCGGCGGTGCTGGACACCTTCGCGGCGACCCGCTGA
Upstream 100 bases:
>100_bases AATCACAGATGTTGGCGTTTTTCGTCTTCCCTCATCGGTTGTCGAAAAATGCATGAGCCGGCGCCGCAGATGCATCTCGT GAGTTGATCCGCCGCACCAT
Downstream 100 bases:
>100_bases CCGGCGGGCGCCGCGCGCAACCACACGTGACAAGGGGCCGCTTCCTCCTCTAAAGAGCGCGGAGGCGGAAAGCGGCGCCT TGCGGGGACGGCTCCGGAGA
Product: TRAP dicarboxylate transporter-DctP subunit precursor
Products: NA
Alternate protein names: TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter-DctP Subunit; Signal Peptide Protein; Exported Protein; Twin-Arginine Translocation Pathway Signal; Trap Dicarboxylate Transporter Dctp Subunit; TRAP Dicarboxylate Transporter; Trap Dicarboxylate Transporter-Dctp Subunit; TRAP-Type C4-Dicarboxylate Transporter Periplasmic Protein; Secreted Protein
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MPSSCSGGERRGAVPADCLLIRSSLMTLSILRAAGLAFLVAGGLNAAAFAQSAPPAKSEPVVWELIDEYPASAIPGQADA TFAAAVEKATGGKLVIQPIPDAKSGLRSREQLKAVSEGRFAMADSFGGALAEDSPLFLLSSLPFLTASADEARQLYVAAR PLYEAEFARRGQKLLFVTPWPPSGIWSAEAVSSPAALKALKIRTYDQTGAELFAATSTRAAVVSFSDLMPKLKTGEFNAV LSSGDGGAGRELWVHVRHFSQITYAVPLSFGTVSLTAWNALDPQTQAAVLRAGEETTQAQWKAMEGRVAANYQRMRENGV VIDEAPPAAVMDLLRTAASKSIVRWRTTVTPEAAAVLDTFAATR
Sequences:
>Translated_364_residues MPSSCSGGERRGAVPADCLLIRSSLMTLSILRAAGLAFLVAGGLNAAAFAQSAPPAKSEPVVWELIDEYPASAIPGQADA TFAAAVEKATGGKLVIQPIPDAKSGLRSREQLKAVSEGRFAMADSFGGALAEDSPLFLLSSLPFLTASADEARQLYVAAR PLYEAEFARRGQKLLFVTPWPPSGIWSAEAVSSPAALKALKIRTYDQTGAELFAATSTRAAVVSFSDLMPKLKTGEFNAV LSSGDGGAGRELWVHVRHFSQITYAVPLSFGTVSLTAWNALDPQTQAAVLRAGEETTQAQWKAMEGRVAANYQRMRENGV VIDEAPPAAVMDLLRTAASKSIVRWRTTVTPEAAAVLDTFAATR >Mature_363_residues PSSCSGGERRGAVPADCLLIRSSLMTLSILRAAGLAFLVAGGLNAAAFAQSAPPAKSEPVVWELIDEYPASAIPGQADAT FAAAVEKATGGKLVIQPIPDAKSGLRSREQLKAVSEGRFAMADSFGGALAEDSPLFLLSSLPFLTASADEARQLYVAARP LYEAEFARRGQKLLFVTPWPPSGIWSAEAVSSPAALKALKIRTYDQTGAELFAATSTRAAVVSFSDLMPKLKTGEFNAVL SSGDGGAGRELWVHVRHFSQITYAVPLSFGTVSLTAWNALDPQTQAAVLRAGEETTQAQWKAMEGRVAANYQRMRENGVV IDEAPPAAVMDLLRTAASKSIVRWRTTVTPEAAAVLDTFAATR
Specific function: Unknown
COG id: COG1638
COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38500; Mature: 38369
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSCSGGERRGAVPADCLLIRSSLMTLSILRAAGLAFLVAGGLNAAAFAQSAPPAKSEP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC VVWELIDEYPASAIPGQADATFAAAVEKATGGKLVIQPIPDAKSGLRSREQLKAVSEGRF HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE AMADSFGGALAEDSPLFLLSSLPFLTASADEARQLYVAARPLYEAEFARRGQKLLFVTPW EEHHCCCCCCCCCCCEEEECCCCCEECCCHHHHEEEHHHCCHHHHHHHHCCCEEEEEECC PPSGIWSAEAVSSPAALKALKIRTYDQTGAELFAATSTRAAVVSFSDLMPKLKTGEFNAV CCCCCCCHHHHCCCHHHEEEEEEECCCCCCCEEEECCCCHHEEEHHHHCCCCCCCCEEEE LSSGDGGAGRELWVHVRHFSQITYAVPLSFGTVSLTAWNALDPQTQAAVLRAGEETTQAQ EECCCCCCCHHHEEEEEHHCCEEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCHHHHHH WKAMEGRVAANYQRMRENGVVIDEAPPAAVMDLLRTAASKSIVRWRTTVTPEAAAVLDTF HHHHCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH AATR HCCC >Mature Secondary Structure PSSCSGGERRGAVPADCLLIRSSLMTLSILRAAGLAFLVAGGLNAAAFAQSAPPAKSEP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC VVWELIDEYPASAIPGQADATFAAAVEKATGGKLVIQPIPDAKSGLRSREQLKAVSEGRF HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE AMADSFGGALAEDSPLFLLSSLPFLTASADEARQLYVAARPLYEAEFARRGQKLLFVTPW EEHHCCCCCCCCCCCEEEECCCCCEECCCHHHHEEEHHHCCHHHHHHHHCCCEEEEEECC PPSGIWSAEAVSSPAALKALKIRTYDQTGAELFAATSTRAAVVSFSDLMPKLKTGEFNAV CCCCCCCHHHHCCCHHHEEEEEEECCCCCCCEEEECCCCHHEEEHHHHCCCCCCCCEEEE LSSGDGGAGRELWVHVRHFSQITYAVPLSFGTVSLTAWNALDPQTQAAVLRAGEETTQAQ EECCCCCCCHHHEEEEEHHCCEEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCHHHHHH WKAMEGRVAANYQRMRENGVVIDEAPPAAVMDLLRTAASKSIVRWRTTVTPEAAAVLDTF HHHHCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH AATR HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA