BacMap

Definition	Azorhizobium caulinodans ORS 571, complete genome.
Accession	NC_009937
Length	5,369,772

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The map label for this gene is ydaD [H]

Identifier: 158424972

GI number: 158424972

Start: 3876373

End: 3877266

Strand: Direct

Name: ydaD [H]

Synonym: AZC_3348

Alternate gene names: 158424972

Gene position: 3876373-3877266 (Clockwise)

Preceding gene: 158424971

Following gene: 158424973

Centisome position: 72.19

GC content: 68.23

Gene sequence:

>894_bases
TTGACGCTGCGGCGAAGGACCGCGACGTTCGGGCACGCACGCAGAAGGCGGAGATTCCCATTCCGCTTCTCTGAAAGGAA
GCCCATGAGCCCCCATCGCCTGCTTCGACCCTCCCCCACGCCACTCTTTCCGGACCTCGCGGGCAAGAGCGTGCTCGTCA
CCGGGGCCTCGACAGGCATCGGCGCGGCGGTCGCGGAGGGGTTTGCGGCCAGCGGGGCCAAGGTGGCCGTGCATTACAAC
GCCAGCCGGGAACCGGCCGAGCAACTCGTCGATCGCATCCAGGCGGCTGGCAGCGAAGCCGTCCTCATCCAGGGCGACGT
GACCGAGCCCGGTGCGCCGGCGCGGATCGTCAAAGCGGCCGTGGATGCCTTCGGCCGGCTCGACGTGCTCGTCAACAATG
CCGGCGGGCTGGTGGAGCGCGTGCCCATCCCCGATTACACGCCGGAATTTGCCACCCGCGTGCTCGACCTCAATGTCACG
CAGGTGATTGCCTTCGTGACCGCGGCGGTACAGCAGATGACGGGCCAGCCCGATCCGGGCGGCTCCATCATCAATGTGTC
CTCCGTCGCAGCCCGCAACGGCGGCGGCAACGGGGCCGTTCTGTACGCGGCGGCCAAGGGCTTCATCTCGACCGCCACCC
ACGGCTGGGCCAAGGAACTCGCCAAGAGCGGCATCCGCGTCAATGCGGTGGCCCCCGGCGTGATCGCGACCCCCTTCCAC
GAGCGCTTCTCGACGCCCCAGCAGATGGCCGCCATGCAGGCGACCATCCCCATGGACCGCATCGGCATTCCGGAAGAATG
CGTGGGGGCGTTCCTGTTCCTCGCCTCCGACGCAGCCAGCGGCTACATCACCGGGCAGATCCTCGAGGTCAACGGCGGCC
AGTACATGCCCTGA

Upstream 100 bases:

>100_bases
ATCTGCCAACCGATCCGCGCTTCACCGGCGCGGTCAAGGCGGCGCTCGGCCGTCTCTATGCGGAAGGGGCTGCCGCCAGC
GTCGACGCCGCCACGCGGGG

Downstream 100 bases:

>100_bases
CCCCGGCCGGTTTCGGGGGTAATGGTGAGGCGGTTTGCCCACAGATCGGCCGATAAATTGCTGACTATATTTTAGGACTT
CTTGCGGGGGAGCCCCTCGT

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: GSP39 [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTLRRRTATFGHARRRRRFPFRFSERKPMSPHRLLRPSPTPLFPDLAGKSVLVTGASTGIGAAVAEGFAASGAKVAVHYN
ASREPAEQLVDRIQAAGSEAVLIQGDVTEPGAPARIVKAAVDAFGRLDVLVNNAGGLVERVPIPDYTPEFATRVLDLNVT
QVIAFVTAAVQQMTGQPDPGGSIINVSSVAARNGGGNGAVLYAAAKGFISTATHGWAKELAKSGIRVNAVAPGVIATPFH
ERFSTPQQMAAMQATIPMDRIGIPEECVGAFLFLASDAASGYITGQILEVNGGQYMP

Sequences:

>Translated_297_residues
MTLRRRTATFGHARRRRRFPFRFSERKPMSPHRLLRPSPTPLFPDLAGKSVLVTGASTGIGAAVAEGFAASGAKVAVHYN
ASREPAEQLVDRIQAAGSEAVLIQGDVTEPGAPARIVKAAVDAFGRLDVLVNNAGGLVERVPIPDYTPEFATRVLDLNVT
QVIAFVTAAVQQMTGQPDPGGSIINVSSVAARNGGGNGAVLYAAAKGFISTATHGWAKELAKSGIRVNAVAPGVIATPFH
ERFSTPQQMAAMQATIPMDRIGIPEECVGAFLFLASDAASGYITGQILEVNGGQYMP
>Mature_296_residues
TLRRRTATFGHARRRRRFPFRFSERKPMSPHRLLRPSPTPLFPDLAGKSVLVTGASTGIGAAVAEGFAASGAKVAVHYNA
SREPAEQLVDRIQAAGSEAVLIQGDVTEPGAPARIVKAAVDAFGRLDVLVNNAGGLVERVPIPDYTPEFATRVLDLNVTQ
VIAFVTAAVQQMTGQPDPGGSIINVSSVAARNGGGNGAVLYAAAKGFISTATHGWAKELAKSGIRVNAVAPGVIATPFHE
RFSTPQQMAAMQATIPMDRIGIPEECVGAFLFLASDAASGYITGQILEVNGGQYMP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=35.7142857142857, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=33.596837944664, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=32.9501915708812, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=34.5238095238095, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=31.7460317460317, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=33.6585365853659, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=31.5175097276265, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI59889578, Length=205, Percent_Identity=33.6585365853659, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=267, Percent_Identity=31.0861423220974, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=31.3492063492063, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4758504, Length=232, Percent_Identity=34.051724137931, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI66933014, Length=265, Percent_Identity=30.9433962264151, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI4504505, Length=203, Percent_Identity=37.4384236453202, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503301, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI224922801, Length=145, Percent_Identity=36.551724137931, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=39.344262295082, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=37.5, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=35.632183908046, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=35.2, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=34.6613545816733, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=31.6205533596838, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=32.5301204819277, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=33.596837944664, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=30.9917355371901, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786812, Length=265, Percent_Identity=29.811320754717, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=30.3643724696356, Blast_Score=75, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=32.4324324324324, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=33.2046332046332, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=33.0855018587361, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=32.319391634981, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.9391634980989, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=33.7037037037037, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=35.8565737051793, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=31.2267657992565, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.9160305343511, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=31.2267657992565, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=32.8413284132841, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=30.4347826086957, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=30.8880308880309, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=33.457249070632, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=31.5789473684211, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=34.5238095238095, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.4511278195489, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=32.7137546468402, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=32.046332046332, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=27.6515151515151, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=28.3018867924528, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=279, Percent_Identity=31.8996415770609, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=29.4820717131474, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=32.8, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=272, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=32.9501915708812, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=211, Percent_Identity=29.3838862559242, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=269, Percent_Identity=30.1115241635688, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=214, Percent_Identity=26.6355140186916, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=33.6787564766839, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=32.8282828282828, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=34.8958333333333, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=30, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=34.4961240310078, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=35.5212355212355, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=34.1176470588235, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI21357041, Length=263, Percent_Identity=33.8403041825095, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=31.3953488372093, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=34.2412451361868, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=32.6771653543307, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24644337, Length=260, Percent_Identity=34.6153846153846, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17737361, Length=230, Percent_Identity=31.7391304347826, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI18859837, Length=197, Percent_Identity=36.0406091370558, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31202; Mature: 31071

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRRRTATFGHARRRRRFPFRFSERKPMSPHRLLRPSPTPLFPDLAGKSVLVTGASTGI
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCH
GAAVAEGFAASGAKVAVHYNASREPAEQLVDRIQAAGSEAVLIQGDVTEPGAPARIVKAA
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
VDAFGRLDVLVNNAGGLVERVPIPDYTPEFATRVLDLNVTQVIAFVTAAVQQMTGQPDPG
HHHHCCEEEEEECCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
GSIINVSSVAARNGGGNGAVLYAAAKGFISTATHGWAKELAKSGIRVNAVAPGVIATPFH
CCEEEEHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCH
ERFSTPQQMAAMQATIPMDRIGIPEECVGAFLFLASDAASGYITGQILEVNGGQYMP
HHHCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure 
TLRRRTATFGHARRRRRFPFRFSERKPMSPHRLLRPSPTPLFPDLAGKSVLVTGASTGI
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCH
GAAVAEGFAASGAKVAVHYNASREPAEQLVDRIQAAGSEAVLIQGDVTEPGAPARIVKAA
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
VDAFGRLDVLVNNAGGLVERVPIPDYTPEFATRVLDLNVTQVIAFVTAAVQQMTGQPDPG
HHHHCCEEEEEECCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
GSIINVSSVAARNGGGNGAVLYAAAKGFISTATHGWAKELAKSGIRVNAVAPGVIATPFH
CCEEEEHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCH
ERFSTPQQMAAMQATIPMDRIGIPEECVGAFLFLASDAASGYITGQILEVNGGQYMP
HHHCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]