| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is 158424967
Identifier: 158424967
GI number: 158424967
Start: 3870712
End: 3871899
Strand: Direct
Name: 158424967
Synonym: AZC_3343
Alternate gene names: NA
Gene position: 3870712-3871899 (Clockwise)
Preceding gene: 158424966
Following gene: 158424968
Centisome position: 72.08
GC content: 65.4
Gene sequence:
>1188_bases ATGACTTTCTCGAACATCAGCCGCCGCACCTTTGTGGGTGGCGTGGCCGGCGCGGCGGGTCTTGCCGCGTTCGGCGGCCG CGCGCAGGCGCAGCTCGCCCTGCCGAAATCGCCCATCACCCTCAATGTGGTGGACGTGGCCGGCAATCTCGCGCTGACCC AGAAGCCCATCGAGAACTACCGGAAGGCGAAGCCGAACCTCGTCTCCAAGATCTCCTTCACCAAGGCCCCCGCGCCGGAA CTGCCGGGCAAGATCAAGGCCCAGCAGGAAGCCGGCCGTGTCGATATCGACATCGTGCTCACCGGCACGGACGCGCTCGC CGCCGGCATCGACCAGAAGCTCTGGGTGGAAATGCTGCCGGCTCACGCCTCGGCCCTGCCCAAGCTCAACGACATCTATC TGGAACCCGCCGCGCGCATGCAGACGCTGGCGAGCGGCCAGGGCGTGGTCGTGACCTATTATCCTTCCGGCCCGCTCATC GAATACATGCCGACCGTGAAGACCCCGCCGACCACGGCGGAGGAGCTTCTGGCCTGGACGCGCGAAAACAAGAACCGCTT CCTCTATGCCCGCCCCGCCAATTCCGGCCCCGGCCGCACCTGGCTCATGGGCCTGCCCTATCTGCTCAAGGATGCGGACC CGACTGACCCGATCAAGGGCTGGGACAAGACCTGGGCCTATCTGAAGGCGCTGGGCGAGAACATCGAGTATTATCCCTCC GGCACCACGCCCACCATGAAGGAACTGGGCGAGGGCTCGCGCGACATCATCGTCTCCACCACCGGGTGGGACATCAATCC GCGCGTGCTCGGCATCGTGCCGAAGGAGGCCAAGGTCGGCGCCCTCAAGGGCTTCCACTGGGTGGCCGACGCGCATTACG TCTGCGTGCCCAAGGGCCTGCCGGACGAGAAGATGGCGGTCATTCTCGACCTCATCTCCTTCATCCTGCAGCCGCAGCAG CAGGCCTACACCTATGACGAGGGCTATTTCTATCCGGGCCCGGCGGTGAAGAACGTGCCGCTGGACCTCGCCCCCGCCGA AAGCCAGGCCGCCATCAAGGAATATGGCCGGCCGGAATATGCCGCGCTGATCGCCGACAATCCCATCGAGCTCCCGCTGA TGCCGGACAAGATGGTGCAGGCCTTCCGCCGCTGGGACGAAGAGATCGGCGCGGCGAAGAAGAAGTAG
Upstream 100 bases:
>100_bases CCGTCACCGACTTTGAAATCGAGCCCGATCTTCCGGCCAGACCGGCAGTCGATCCGATCGGGGCGGGCTCGCGAGGAAAC GCCAAGGGAGAAATGCGACC
Downstream 100 bases:
>100_bases CCGCACGCATCCGCGCGCCGCGCACGCCGTGGCGCGCCTCTCGACACTCTCGGAACCCGCCGGCGCGTCACGCGCCGGCA TCCTGACCGTGCAACTTCCG
Product: ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MTFSNISRRTFVGGVAGAAGLAAFGGRAQAQLALPKSPITLNVVDVAGNLALTQKPIENYRKAKPNLVSKISFTKAPAPE LPGKIKAQQEAGRVDIDIVLTGTDALAAGIDQKLWVEMLPAHASALPKLNDIYLEPAARMQTLASGQGVVVTYYPSGPLI EYMPTVKTPPTTAEELLAWTRENKNRFLYARPANSGPGRTWLMGLPYLLKDADPTDPIKGWDKTWAYLKALGENIEYYPS GTTPTMKELGEGSRDIIVSTTGWDINPRVLGIVPKEAKVGALKGFHWVADAHYVCVPKGLPDEKMAVILDLISFILQPQQ QAYTYDEGYFYPGPAVKNVPLDLAPAESQAAIKEYGRPEYAALIADNPIELPLMPDKMVQAFRRWDEEIGAAKKK
Sequences:
>Translated_395_residues MTFSNISRRTFVGGVAGAAGLAAFGGRAQAQLALPKSPITLNVVDVAGNLALTQKPIENYRKAKPNLVSKISFTKAPAPE LPGKIKAQQEAGRVDIDIVLTGTDALAAGIDQKLWVEMLPAHASALPKLNDIYLEPAARMQTLASGQGVVVTYYPSGPLI EYMPTVKTPPTTAEELLAWTRENKNRFLYARPANSGPGRTWLMGLPYLLKDADPTDPIKGWDKTWAYLKALGENIEYYPS GTTPTMKELGEGSRDIIVSTTGWDINPRVLGIVPKEAKVGALKGFHWVADAHYVCVPKGLPDEKMAVILDLISFILQPQQ QAYTYDEGYFYPGPAVKNVPLDLAPAESQAAIKEYGRPEYAALIADNPIELPLMPDKMVQAFRRWDEEIGAAKKK >Mature_394_residues TFSNISRRTFVGGVAGAAGLAAFGGRAQAQLALPKSPITLNVVDVAGNLALTQKPIENYRKAKPNLVSKISFTKAPAPEL PGKIKAQQEAGRVDIDIVLTGTDALAAGIDQKLWVEMLPAHASALPKLNDIYLEPAARMQTLASGQGVVVTYYPSGPLIE YMPTVKTPPTTAEELLAWTRENKNRFLYARPANSGPGRTWLMGLPYLLKDADPTDPIKGWDKTWAYLKALGENIEYYPSG TTPTMKELGEGSRDIIVSTTGWDINPRVLGIVPKEAKVGALKGFHWVADAHYVCVPKGLPDEKMAVILDLISFILQPQQQ AYTYDEGYFYPGPAVKNVPLDLAPAESQAAIKEYGRPEYAALIADNPIELPLMPDKMVQAFRRWDEEIGAAKKK
Specific function: Unknown
COG id: COG4134
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43059; Mature: 42928
Theoretical pI: Translated: 8.29; Mature: 8.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFSNISRRTFVGGVAGAAGLAAFGGRAQAQLALPKSPITLNVVDVAGNLALTQKPIENY CCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCEEECHHHHHHH RKAKPNLVSKISFTKAPAPELPGKIKAQQEAGRVDIDIVLTGTDALAAGIDQKLWVEMLP HHCCCCHHHHEECCCCCCCCCCCCEEEHHHCCCEEEEEEEECCHHHHHCCCHHHHHHHHH AHASALPKLNDIYLEPAARMQTLASGQGVVVTYYPSGPLIEYMPTVKTPPTTAEELLAWT HHHHHCCCCCCEEECCHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHH RENKNRFLYARPANSGPGRTWLMGLPYLLKDADPTDPIKGWDKTWAYLKALGENIEYYPS HCCCCEEEEEECCCCCCCCEEEECCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC GTTPTMKELGEGSRDIIVSTTGWDINPRVLGIVPKEAKVGALKGFHWVADAHYVCVPKGL CCCHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHCCEEEEECCEEEEECCCC PDEKMAVILDLISFILQPQQQAYTYDEGYFYPGPAVKNVPLDLAPAESQAAIKEYGRPEY CHHHHHHHHHHHHHHHCCCHHHEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCE AALIADNPIELPLMPDKMVQAFRRWDEEIGAAKKK EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TFSNISRRTFVGGVAGAAGLAAFGGRAQAQLALPKSPITLNVVDVAGNLALTQKPIENY CCCCCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCEEECHHHHHHH RKAKPNLVSKISFTKAPAPELPGKIKAQQEAGRVDIDIVLTGTDALAAGIDQKLWVEMLP HHCCCCHHHHEECCCCCCCCCCCCEEEHHHCCCEEEEEEEECCHHHHHCCCHHHHHHHHH AHASALPKLNDIYLEPAARMQTLASGQGVVVTYYPSGPLIEYMPTVKTPPTTAEELLAWT HHHHHCCCCCCEEECCHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHH RENKNRFLYARPANSGPGRTWLMGLPYLLKDADPTDPIKGWDKTWAYLKALGENIEYYPS HCCCCEEEEEECCCCCCCCEEEECCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC GTTPTMKELGEGSRDIIVSTTGWDINPRVLGIVPKEAKVGALKGFHWVADAHYVCVPKGL CCCHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHCCEEEEECCEEEEECCCC PDEKMAVILDLISFILQPQQQAYTYDEGYFYPGPAVKNVPLDLAPAESQAAIKEYGRPEY CHHHHHHHHHHHHHHHCCCHHHEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCE AALIADNPIELPLMPDKMVQAFRRWDEEIGAAKKK EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA