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The map label for this gene is yciR [C]

Identifier: 158424850

GI number: 158424850

Start: 3697982

End: 3699817

Strand: Direct

Name: yciR [C]

Synonym: AZC_3226

Alternate gene names: 158424850

Gene position: 3697982-3699817 (Clockwise)

Preceding gene: 158424849

Following gene: 158424854

Centisome position: 68.87

GC content: 62.85

Gene sequence:

>1836_bases
ATGAAGTGCCCTCCGGTGCCTCCCCACGAGAAGGAGCGGCTCGCCGCTCTGGACAGCTACCGCCTCTCTGGTGAAATGCC
TGTTGCGGACCTCTCCCCGCTCGTCGAGATGGCTCTGCACGTCTTCAAGGTCCCCATGGCAGCGGTGAACATGATCGGTT
CCGATCACGTCTTCTTCGCCGCCAGTGCGGGTTTCGGTGCAGTGGATAAGCGCAGGGAGGTTTCCTTTTGTGCCCACACC
ATCCTTCAGGGCAAGGTGATGGTTGTGCCGGATGCAGAGCAGGACGAGCGTTTCCACGACAACCCGCTTGTTACCGGCGC
AGCCGGAATTCGCTTTTATGCGGGGGCGCCCCTCTTGTCGGGGGATGGTCATGCCATTGGCGCTCTTTGCATTCTGGATA
CGTTTCCGCGCGTTGGATTTGCTTCCGAAGAGCGTGAACGTCTGAGCCAACTGGCGCATGTCGTCATGGACAGGCTGGAG
ATCCGCCGTATTGGCGACCTTGCGTCAAGGCGCGGAAATGAGATCCACGTCCGCGCCGTTGATCCTGAGCAGCTTTCCCT
CCTCGCCAGCACCGATGCGCTCACGGGTCTGGCAAATCGCCGCCAATTCTATCGGGCGGTAGAGGCGACCCTGCTCTGCG
GGCATCCCTGTGCTGTCCTGATGCTCGACATCGACGGTTTCAAGGACATCAACAATATCCTGGGGCCGGAGGCGGCGGAC
GACGTCCTGAAAGCGATCGCCGGACTGCTGTCCGCGGAGACCACGGCTGGCGCTACCGTTGCACGCGTTGGTGGGGACGA
ATTTGCCGTGGTCCTTGGAGGTCTTTCCGAGGCCATGGCCGAGTCGTTCGCTCGCCTGCTCCTCTCGAAGATCACCAGCC
TTCATCCTCTTGTCGGTGAGGATGTCACGATCAGTGCCAGCTGCGGAATTGCCTTCTCACCCCACGACACGAAGGCTGCG
GCGGAGTTGATCGGTGATGCGGACCTCGCGCTCCATGCTGCCAAGATCAGTCGCAGCGCAAGCATCGCGCTCTACTCGCC
CGCGCTGCGGAATGAAGCCCTGGATCGGCGGTTGTCCAGCCTGGACCTGCATCGAGCCGTGTCTAACGGAGAGCTTCGGC
TGTTCTACCAACCTCAGGTGCGTCTTGACGACGGGGCCCTGGTCGGCGCAGAGGCGCTGATCCGCTGGCTTCACCCAAGC
CGAGGTCTCCTCCTGCCTGCGGTGTTTCTGCCTTCGCTGGACGCCGGCCCCCTGGCATCCGTGGTGGGGCGCTGGGTGAT
CGAGGAAGGTTGTGCCCAGGCCGCGCGGTGGCGGCGGTCTGGGGCCGGGGGCTTCCGCATGGCGGTCAACCTTTTCGCTT
CGCAGGTTCGCAGCGGTGACCTGCCGAAGCAGGTCGAAGATGCCCTGGACCGCCACAGCCTCCCGCCGGAAGCGCTGGAA
CTGGAAATCACCGAGAACATCGTACTGTCGAACGATGCCATCGCCCTGGACGCCCTGACGGAGCTCAGGGCGATGGGCGT
TGGCATTGCGTTTGATGATTTCGGCACCGGCTTCGCCTCTCTCAGCCTGCTGACGCGTTATCCGGTGAACTGCATCAAGA
TCGATCGCAGCTTCGTCCAAGCCATGCTTCGCTCACCTCGCGAAGCGGCTGTCGTCTCGTCGATCCTTCAGATGGGGCGG
GCGCTGGAAATAGACGTCATAGCCGAGGGCATTGAGACCGAGGAAGAACGCTCCTACCTCGCCGATCGCGCCTGCCCGGA
AGGACAGGGATATCTGTTCGGCCGGCCCATGCCGGCGCAGGAATTCGAGGCCCTGCTTCTCAGCCCCGGCCGCTGA

Upstream 100 bases:

>100_bases
TCCATGACGCCTTCGCGTTCAATTGACGTTTATGCTACTTTAAAGGGAATAAGCCCAATTTCAGTTGTCATTTTCGATTG
TTATGGGAGGGATTTAAGTC

Downstream 100 bases:

>100_bases
CGCGCGCGAAGGCTTCTGCCCGCCGGAACGGTGGTCCAAGACGACTTCTTGGACCACGTCCCATGCCGGCAGGACGGGCA
TTCCAGATGGCGGTACATTG

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MKCPPVPPHEKERLAALDSYRLSGEMPVADLSPLVEMALHVFKVPMAAVNMIGSDHVFFAASAGFGAVDKRREVSFCAHT
ILQGKVMVVPDAEQDERFHDNPLVTGAAGIRFYAGAPLLSGDGHAIGALCILDTFPRVGFASEERERLSQLAHVVMDRLE
IRRIGDLASRRGNEIHVRAVDPEQLSLLASTDALTGLANRRQFYRAVEATLLCGHPCAVLMLDIDGFKDINNILGPEAAD
DVLKAIAGLLSAETTAGATVARVGGDEFAVVLGGLSEAMAESFARLLLSKITSLHPLVGEDVTISASCGIAFSPHDTKAA
AELIGDADLALHAAKISRSASIALYSPALRNEALDRRLSSLDLHRAVSNGELRLFYQPQVRLDDGALVGAEALIRWLHPS
RGLLLPAVFLPSLDAGPLASVVGRWVIEEGCAQAARWRRSGAGGFRMAVNLFASQVRSGDLPKQVEDALDRHSLPPEALE
LEITENIVLSNDAIALDALTELRAMGVGIAFDDFGTGFASLSLLTRYPVNCIKIDRSFVQAMLRSPREAAVVSSILQMGR
ALEIDVIAEGIETEEERSYLADRACPEGQGYLFGRPMPAQEFEALLLSPGR

Sequences:

>Translated_611_residues
MKCPPVPPHEKERLAALDSYRLSGEMPVADLSPLVEMALHVFKVPMAAVNMIGSDHVFFAASAGFGAVDKRREVSFCAHT
ILQGKVMVVPDAEQDERFHDNPLVTGAAGIRFYAGAPLLSGDGHAIGALCILDTFPRVGFASEERERLSQLAHVVMDRLE
IRRIGDLASRRGNEIHVRAVDPEQLSLLASTDALTGLANRRQFYRAVEATLLCGHPCAVLMLDIDGFKDINNILGPEAAD
DVLKAIAGLLSAETTAGATVARVGGDEFAVVLGGLSEAMAESFARLLLSKITSLHPLVGEDVTISASCGIAFSPHDTKAA
AELIGDADLALHAAKISRSASIALYSPALRNEALDRRLSSLDLHRAVSNGELRLFYQPQVRLDDGALVGAEALIRWLHPS
RGLLLPAVFLPSLDAGPLASVVGRWVIEEGCAQAARWRRSGAGGFRMAVNLFASQVRSGDLPKQVEDALDRHSLPPEALE
LEITENIVLSNDAIALDALTELRAMGVGIAFDDFGTGFASLSLLTRYPVNCIKIDRSFVQAMLRSPREAAVVSSILQMGR
ALEIDVIAEGIETEEERSYLADRACPEGQGYLFGRPMPAQEFEALLLSPGR
>Mature_611_residues
MKCPPVPPHEKERLAALDSYRLSGEMPVADLSPLVEMALHVFKVPMAAVNMIGSDHVFFAASAGFGAVDKRREVSFCAHT
ILQGKVMVVPDAEQDERFHDNPLVTGAAGIRFYAGAPLLSGDGHAIGALCILDTFPRVGFASEERERLSQLAHVVMDRLE
IRRIGDLASRRGNEIHVRAVDPEQLSLLASTDALTGLANRRQFYRAVEATLLCGHPCAVLMLDIDGFKDINNILGPEAAD
DVLKAIAGLLSAETTAGATVARVGGDEFAVVLGGLSEAMAESFARLLLSKITSLHPLVGEDVTISASCGIAFSPHDTKAA
AELIGDADLALHAAKISRSASIALYSPALRNEALDRRLSSLDLHRAVSNGELRLFYQPQVRLDDGALVGAEALIRWLHPS
RGLLLPAVFLPSLDAGPLASVVGRWVIEEGCAQAARWRRSGAGGFRMAVNLFASQVRSGDLPKQVEDALDRHSLPPEALE
LEITENIVLSNDAIALDALTELRAMGVGIAFDDFGTGFASLSLLTRYPVNCIKIDRSFVQAMLRSPREAAVVSSILQMGR
ALEIDVIAEGIETEEERSYLADRACPEGQGYLFGRPMPAQEFEALLLSPGR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=423, Percent_Identity=31.6784869976359, Blast_Score=238, Evalue=7e-64,
Organism=Escherichia coli, GI87081921, Length=459, Percent_Identity=31.3725490196078, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=27.7777777777778, Blast_Score=169, Evalue=6e-43,
Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=32.9268292682927, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=28.75, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=30.4166666666667, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=32.258064516129, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=27.8481012658228, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=30, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=28.8, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788849, Length=250, Percent_Identity=30.8, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=233, Percent_Identity=30.9012875536481, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=341, Percent_Identity=26.3929618768328, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=33.9393939393939, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI87082007, Length=151, Percent_Identity=36.4238410596026, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=124, Percent_Identity=34.6774193548387, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=32.7272727272727, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=251, Percent_Identity=27.4900398406374, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=157, Percent_Identity=28.0254777070064, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=32.0754716981132, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787262, Length=153, Percent_Identity=27.4509803921569, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 65614; Mature: 65614

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCPPVPPHEKERLAALDSYRLSGEMPVADLSPLVEMALHVFKVPMAAVNMIGSDHVFFA
CCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ASAGFGAVDKRREVSFCAHTILQGKVMVVPDAEQDERFHDNPLVTGAAGIRFYAGAPLLS
ECCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCCCEEEEECCCEEC
GDGHAIGALCILDTFPRVGFASEERERLSQLAHVVMDRLEIRRIGDLASRRGNEIHVRAV
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
DPEQLSLLASTDALTGLANRRQFYRAVEATLLCGHPCAVLMLDIDGFKDINNILGPEAAD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCHHH
DVLKAIAGLLSAETTAGATVARVGGDEFAVVLGGLSEAMAESFARLLLSKITSLHPLVGE
HHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DVTISASCGIAFSPHDTKAAAELIGDADLALHAAKISRSASIALYSPALRNEALDRRLSS
CEEEEECCCEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH
LDLHRAVSNGELRLFYQPQVRLDDGALVGAEALIRWLHPSRGLLLPAVFLPSLDAGPLAS
HHHHHHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCEEHHHHCCCCCCCHHHH
VVGRWVIEEGCAQAARWRRSGAGGFRMAVNLFASQVRSGDLPKQVEDALDRHSLPPEALE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHEE
LEITENIVLSNDAIALDALTELRAMGVGIAFDDFGTGFASLSLLTRYPVNCIKIDRSFVQ
EEEECCEEECCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCHHEEHHHHHHH
AMLRSPREAAVVSSILQMGRALEIDVIAEGIETEEERSYLADRACPEGQGYLFGRPMPAQ
HHHHCCHHHHHHHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHCCCCCCCCEEECCCCCHH
EFEALLLSPGR
HHHHHHCCCCC
>Mature Secondary Structure
MKCPPVPPHEKERLAALDSYRLSGEMPVADLSPLVEMALHVFKVPMAAVNMIGSDHVFFA
CCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ASAGFGAVDKRREVSFCAHTILQGKVMVVPDAEQDERFHDNPLVTGAAGIRFYAGAPLLS
ECCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCCCEEEEECCCEEC
GDGHAIGALCILDTFPRVGFASEERERLSQLAHVVMDRLEIRRIGDLASRRGNEIHVRAV
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
DPEQLSLLASTDALTGLANRRQFYRAVEATLLCGHPCAVLMLDIDGFKDINNILGPEAAD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCHHH
DVLKAIAGLLSAETTAGATVARVGGDEFAVVLGGLSEAMAESFARLLLSKITSLHPLVGE
HHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DVTISASCGIAFSPHDTKAAAELIGDADLALHAAKISRSASIALYSPALRNEALDRRLSS
CEEEEECCCEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH
LDLHRAVSNGELRLFYQPQVRLDDGALVGAEALIRWLHPSRGLLLPAVFLPSLDAGPLAS
HHHHHHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCEEHHHHCCCCCCCHHHH
VVGRWVIEEGCAQAARWRRSGAGGFRMAVNLFASQVRSGDLPKQVEDALDRHSLPPEALE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHEE
LEITENIVLSNDAIALDALTELRAMGVGIAFDDFGTGFASLSLLTRYPVNCIKIDRSFVQ
EEEECCEEECCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCHHEEHHHHHHH
AMLRSPREAAVVSSILQMGRALEIDVIAEGIETEEERSYLADRACPEGQGYLFGRPMPAQ
HHHHCCHHHHHHHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHCCCCCCCCEEECCCCCHH
EFEALLLSPGR
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]