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The map label for this gene is nodW [H]

Identifier: 158424718

GI number: 158424718

Start: 3541381

End: 3541764

Strand: Direct

Name: nodW [H]

Synonym: AZC_3094

Alternate gene names: 158424718

Gene position: 3541381-3541764 (Clockwise)

Preceding gene: 158424717

Following gene: 158424719

Centisome position: 65.95

GC content: 60.94

Gene sequence:

>384_bases
GTGACTGCGCCTTTGATTGCGTTCATTGACGATGACCCCGCCATCGGCGAGGCCATCGCCAATTTCTTTGCTGCCTATGA
TTATGAAGCGGCGGTCTTCAACGACGCCGAGACGTTTTTGGCGTCAACGGCCATCGATCGCGCCGACTGCATCATTACCG
ACGTCCGACTCGGCGGCATGTCCGGGCTTGATCTGCTGGACCGGCTGCGGGCCCGTCCCGCCTGTCCTCCCGTGATCGTG
ATCACCGCATTTCCCCAGGATGCGATCCGCAACCGCGCCTTGTCGGCCGGAGCCACGGCCTTCTTCCTGAAGCCGTTACC
GATGGACGAACTGCTGACCAGCGTCATGCAGGCGCTTGCAAAGGGTTTTGACGGGACGCAATGA

Upstream 100 bases:

>100_bases
TCCGGAAATAAGAACATGCGGCGTCGTTTCGCCGCTGGGCAGCGGGTGGGCGGAGCCTTCGGGTTCCGCCCCCCGCCCAC
CGCCCAAGTGGAGGAAGGCT

Downstream 100 bases:

>100_bases
TGCCGCTTCGGCATGATCATTCCGAGCGGCCATAGCGCACCGCAGCCATGACGCCTGTTCCCCCTTCACGCGCCGACCGC
TCTTCGCCGGGCGAGGTTCT

Product: two component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MTAPLIAFIDDDPAIGEAIANFFAAYDYEAAVFNDAETFLASTAIDRADCIITDVRLGGMSGLDLLDRLRARPACPPVIV
ITAFPQDAIRNRALSAGATAFFLKPLPMDELLTSVMQALAKGFDGTQ

Sequences:

>Translated_127_residues
MTAPLIAFIDDDPAIGEAIANFFAAYDYEAAVFNDAETFLASTAIDRADCIITDVRLGGMSGLDLLDRLRARPACPPVIV
ITAFPQDAIRNRALSAGATAFFLKPLPMDELLTSVMQALAKGFDGTQ
>Mature_126_residues
TAPLIAFIDDDPAIGEAIANFFAAYDYEAAVFNDAETFLASTAIDRADCIITDVRLGGMSGLDLLDRLRARPACPPVIVI
TAFPQDAIRNRALSAGATAFFLKPLPMDELLTSVMQALAKGFDGTQ

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 13556; Mature: 13424

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPLIAFIDDDPAIGEAIANFFAAYDYEAAVFNDAETFLASTAIDRADCIITDVRLGGM
CCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCCCEEEEEECCCCC
SGLDLLDRLRARPACPPVIVITAFPQDAIRNRALSAGATAFFLKPLPMDELLTSVMQALA
CCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
KGFDGTQ
HCCCCCC
>Mature Secondary Structure 
TAPLIAFIDDDPAIGEAIANFFAAYDYEAAVFNDAETFLASTAIDRADCIITDVRLGGM
CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCCCEEEEEECCCCC
SGLDLLDRLRARPACPPVIVITAFPQDAIRNRALSAGATAFFLKPLPMDELLTSVMQALA
CCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
KGFDGTQ
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]