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The map label for this gene is yciR [C]

Identifier: 158424709

GI number: 158424709

Start: 3529329

End: 3531536

Strand: Reverse

Name: yciR [C]

Synonym: AZC_3085

Alternate gene names: 158424709

Gene position: 3531536-3529329 (Counterclockwise)

Preceding gene: 158424710

Following gene: 158424708

Centisome position: 65.77

GC content: 69.2

Gene sequence:

>2208_bases
ATGGCGGACGAGGCGGAGCAGGCCGGGCTGCGCATACTGGGGGACGTCCTTTCGGCGGCCCATTCAGCCGGCGACCTCTC
GTGCCTCTCTCCCGACCTCCTCGCGCGTATCGCTGACACCTTCCATCTCCAGCGGGTTTCGCTCTTTCAGGTGCACGAGG
CCGAGGGCAGGGGCATCGCGGCCACCTGCGTGATCGATTGGCGGCGGCCGGGCCTCGCCTTTCCGGCCATGACGGAGGGG
TCCCATCCGCCGCTCACGGCGGCCGGAGGTGATCCCCTTCTGGCGCAATGGGCGGCGCGACGGCGCCGCGGCGAGACGAT
CATCGGCCGGACGCGCGATCTCACCGGCTATCTGTACGGCTTCTTTTCCCACTATGGCGTCGTCACGTTCCTGACCGAAC
CGGTCATGGTGCATGGGCGCTGGTGGGGCCACTTCTGCGTGGACACGCCGGATGCCGAACATGAGTGGACGGCGGTCGAG
CGGCAGGCCTTCAAGTGCATCGCCGCCGTGCTGGCGGGGCTGCTGGCCCGCTCGGGCACCGAAGGTCTGGTCAGCGAGGC
CGCGCGCCGGGCCATGCTGGACACCTCCATCGATGCGGTGATCGTGGCCGACGAGGCGGGCGCCATCGTCGAGTTCAACC
ACGCGGCGGAGGCCATCTTCGGTCACACGCGCGAGGGGGTGATCGGCCGGCCCATGACCGAGACGATCATCCCGGCCCAT
TACATCGACCGCCACCGCCAGGGATTCATGCGCCATCTGGCGACCGGCGAGAACCACATCATGCGCCGGCTCGTCGAGGT
GGAGGCGCTGCGGGCGGATGGCAGCGTCTTTCCGGCCGAACTGACCGTGAACGAGCATCGCGCCGGTGGGCGCCGCCTGT
TCAGCGCCTTCGTCCGCGACATCTCCGACCGCATCACGTCCCGCCGCGCGCTGGAGCGGCTGGCGTTCACGGACATGCAC
ACCGGGCTCAGCAACCGCACCGGGCTGCTGCGGCTGTGCACCGGACGGCCGACCCGGCCCTCCGGCGCGGTGGTGCTGAT
GCTGCGCGACCTCGGTGTGGTCAAGACGAGCTTCGGCGACGACTGGGCGGAGCCCATGATCGTGGAGACCGCCAACCTGC
TCAGCCGGATGCTGCCGCAGGAGGCGTGCCTCGGTCGCACCGGCGAGAGCGAGTTCACGGTCGTGACCTGGCAGCCGGGA
GCGGCGGCGGAACTCGCGGAAACGCTCATCGGGCGCCTGCGCTCGGCCATCGAGAGCGGCGGCCGGCGCTTCTATCTTCG
GGTCGGTCTCGGGGTGGTGGAGCGGCCGGGGGATGCCACCTATCTCCTGCGGGATGCGGAAATGGCAGCGCGCGACTGCC
GGGACGGCCACCTGCTGCACTTCGCCGAACACATGCGGGCGCAGCACCAGCAGCGGCTGGAACTGGAGATGGCCCTGCGG
GACGTCATCCAGCGGCGGACATCGGCGCTCTCGCTCCATTACCAGCCGGTGGTCAGCGCCCGGACCGGCGGGCTTGTCGG
TTTCGAGGCTCTGGTGCGCTGGTATTCCGAGACGCACGGTCCGGTCTCGCCCGCATTGTTCGTGCCTCTGGCGGAAGCGG
GAGGGTTCGCGGAGCGGCTGGGGGCCTGGGTCATCGAGACCGCCATCTCCGCCTGCGCCGGCTGGAATGTCCGCCGGCGC
GCGCATGGGCTGGCCCCCTGGCACATCGCCATCAACCTTTCGGCCACGGAGGTGGTGGCGCCGGACCTCATCGAGCGGGT
GCGCCAGACGATGGCCTTTCACGGGCTCCCGCCCCAGTGCGTCTGTTTCGAGCTGACCGAAAGCGCCATCCTGAACCAGC
CCGAGATCGCCATCGAGACCCTCTCGCGCCTGCGCGCCCTTGGCTGCACCACGGCCATCGACGATTTCGGCACCGGCTAT
TCGAGCCTCAGCTATCTCCAGCGTCTGCCCATGGACGTGTTGAAGATTGACCGCAGTTTCGTCCTCGACATGGTGGACAA
CAGCCGTTCGCGGGAGATCGTGCGGGTCATGATCGAGATGGCCCACGGCCTCGGCATGAGCGTGGTGGCGGAGGGCGTTG
AGACCACCGGCGCCTTGCAGATCCTGCGTCAGATGGGCTGCGACCGCGCGCAGGGATTCCTCTTCGGCCGTGCCATGCCG
GGGGATGTGGCGGGGACCCTGCCGGAGACACTCGCTCCCACCGGTTAG

Upstream 100 bases:

>100_bases
GTTGTAAGGGGCCTGCATCGACGGCATCGCGGGTGATGCGGGCATTCAGGATGTGGTATCAAAATGCCGGCGGGGGCATG
CGGGCCTCCGGGGGGAAGGC

Downstream 100 bases:

>100_bases
GTGTGGGGACCGGGAACAATCTGCCGTTGCTGCTGGTGCCTGTCACATTTTTGCACCAGTGTCGTTCCACTGCATCACTG
CCGAACGACTCAGGGGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 734

Protein sequence:

>735_residues
MADEAEQAGLRILGDVLSAAHSAGDLSCLSPDLLARIADTFHLQRVSLFQVHEAEGRGIAATCVIDWRRPGLAFPAMTEG
SHPPLTAAGGDPLLAQWAARRRRGETIIGRTRDLTGYLYGFFSHYGVVTFLTEPVMVHGRWWGHFCVDTPDAEHEWTAVE
RQAFKCIAAVLAGLLARSGTEGLVSEAARRAMLDTSIDAVIVADEAGAIVEFNHAAEAIFGHTREGVIGRPMTETIIPAH
YIDRHRQGFMRHLATGENHIMRRLVEVEALRADGSVFPAELTVNEHRAGGRRLFSAFVRDISDRITSRRALERLAFTDMH
TGLSNRTGLLRLCTGRPTRPSGAVVLMLRDLGVVKTSFGDDWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPG
AAAELAETLIGRLRSAIESGGRRFYLRVGLGVVERPGDATYLLRDAEMAARDCRDGHLLHFAEHMRAQHQQRLELEMALR
DVIQRRTSALSLHYQPVVSARTGGLVGFEALVRWYSETHGPVSPALFVPLAEAGGFAERLGAWVIETAISACAGWNVRRR
AHGLAPWHIAINLSATEVVAPDLIERVRQTMAFHGLPPQCVCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGTGY
SSLSYLQRLPMDVLKIDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGALQILRQMGCDRAQGFLFGRAMP
GDVAGTLPETLAPTG

Sequences:

>Translated_735_residues
MADEAEQAGLRILGDVLSAAHSAGDLSCLSPDLLARIADTFHLQRVSLFQVHEAEGRGIAATCVIDWRRPGLAFPAMTEG
SHPPLTAAGGDPLLAQWAARRRRGETIIGRTRDLTGYLYGFFSHYGVVTFLTEPVMVHGRWWGHFCVDTPDAEHEWTAVE
RQAFKCIAAVLAGLLARSGTEGLVSEAARRAMLDTSIDAVIVADEAGAIVEFNHAAEAIFGHTREGVIGRPMTETIIPAH
YIDRHRQGFMRHLATGENHIMRRLVEVEALRADGSVFPAELTVNEHRAGGRRLFSAFVRDISDRITSRRALERLAFTDMH
TGLSNRTGLLRLCTGRPTRPSGAVVLMLRDLGVVKTSFGDDWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPG
AAAELAETLIGRLRSAIESGGRRFYLRVGLGVVERPGDATYLLRDAEMAARDCRDGHLLHFAEHMRAQHQQRLELEMALR
DVIQRRTSALSLHYQPVVSARTGGLVGFEALVRWYSETHGPVSPALFVPLAEAGGFAERLGAWVIETAISACAGWNVRRR
AHGLAPWHIAINLSATEVVAPDLIERVRQTMAFHGLPPQCVCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGTGY
SSLSYLQRLPMDVLKIDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGALQILRQMGCDRAQGFLFGRAMP
GDVAGTLPETLAPTG
>Mature_734_residues
ADEAEQAGLRILGDVLSAAHSAGDLSCLSPDLLARIADTFHLQRVSLFQVHEAEGRGIAATCVIDWRRPGLAFPAMTEGS
HPPLTAAGGDPLLAQWAARRRRGETIIGRTRDLTGYLYGFFSHYGVVTFLTEPVMVHGRWWGHFCVDTPDAEHEWTAVER
QAFKCIAAVLAGLLARSGTEGLVSEAARRAMLDTSIDAVIVADEAGAIVEFNHAAEAIFGHTREGVIGRPMTETIIPAHY
IDRHRQGFMRHLATGENHIMRRLVEVEALRADGSVFPAELTVNEHRAGGRRLFSAFVRDISDRITSRRALERLAFTDMHT
GLSNRTGLLRLCTGRPTRPSGAVVLMLRDLGVVKTSFGDDWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPGA
AAELAETLIGRLRSAIESGGRRFYLRVGLGVVERPGDATYLLRDAEMAARDCRDGHLLHFAEHMRAQHQQRLELEMALRD
VIQRRTSALSLHYQPVVSARTGGLVGFEALVRWYSETHGPVSPALFVPLAEAGGFAERLGAWVIETAISACAGWNVRRRA
HGLAPWHIAINLSATEVVAPDLIERVRQTMAFHGLPPQCVCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGTGYS
SLSYLQRLPMDVLKIDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGALQILRQMGCDRAQGFLFGRAMPG
DVAGTLPETLAPTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain

Homologues:

Organism=Escherichia coli, GI1787541, Length=577, Percent_Identity=28.9428076256499, Blast_Score=196, Evalue=5e-51,
Organism=Escherichia coli, GI87081921, Length=447, Percent_Identity=30.2013422818792, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=38.034188034188, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=37.2950819672131, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=34.6320346320346, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=234, Percent_Identity=35.8974358974359, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=34.7826086956522, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI226510982, Length=281, Percent_Identity=30.6049822064057, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1786507, Length=231, Percent_Identity=35.9307359307359, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081980, Length=235, Percent_Identity=31.9148936170213, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=276, Percent_Identity=27.8985507246377, Blast_Score=109, Evalue=8e-25,
Organism=Escherichia coli, GI1788502, Length=234, Percent_Identity=29.9145299145299, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787410, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789650, Length=426, Percent_Identity=21.3615023474178, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3085_AZOC5 (Q04855)

Other databases:

- EMBL:   X63841
- EMBL:   AP009384
- PIR:   S18623
- RefSeq:   YP_001526001.1
- ProteinModelPortal:   Q04855
- GeneID:   5689854
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3085
- OMA:   ERGCDEV
- ProtClustDB:   CLSK2795700
- BioCyc:   ACAU438753:AZC_3085-MONOMER
- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- SMART:   SM00052
- SMART:   SM00065
- SMART:   SM00267
- SMART:   SM00086
- SMART:   SM00091
- TIGRFAMs:   TIGR00229

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS; SSF55073 A/G_cyclase

EC number: NA

Molecular weight: Translated: 80477; Mature: 80346

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50883 EAL; PS50887 GGDEF; PS50113 PAC; PS50112 PAS; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEAEQAGLRILGDVLSAAHSAGDLSCLSPDLLARIADTFHLQRVSLFQVHEAEGRGIA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCEE
ATCVIDWRRPGLAFPAMTEGSHPPLTAAGGDPLLAQWAARRRRGETIIGRTRDLTGYLYG
EEEEEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHH
FFSHYGVVTFLTEPVMVHGRWWGHFCVDTPDAEHEWTAVERQAFKCIAAVLAGLLARSGT
HHHHCCCHHHHHCCEEEECEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EGLVSEAARRAMLDTSIDAVIVADEAGAIVEFNHAAEAIFGHTREGVIGRPMTETIIPAH
HHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHHCCHH
YIDRHRQGFMRHLATGENHIMRRLVEVEALRADGSVFPAELTVNEHRAGGRRLFSAFVRD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
ISDRITSRRALERLAFTDMHTGLSNRTGLLRLCTGRPTRPSGAVVLMLRDLGVVKTSFGD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCHHEECCCC
DWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPGAAAELAETLIGRLRSAIESG
CCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
GRRFYLRVGLGVVERPGDATYLLRDAEMAARDCRDGHLLHFAEHMRAQHQQRLELEMALR
CCEEEEEECCCEEECCCCCEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DVIQRRTSALSLHYQPVVSARTGGLVGFEALVRWYSETHGPVSPALFVPLAEAGGFAERL
HHHHHHHHHHEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHEEEEHHCCCHHHHH
GAWVIETAISACAGWNVRRRAHGLAPWHIAINLSATEVVAPDLIERVRQTMAFHGLPPQC
HHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCC
VCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGTGYSSLSYLQRLPMDVLKIDRSF
EEHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
VLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGALQILRQMGCDRAQGFLFGRAMP
HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEECCCC
GDVAGTLPETLAPTG
CCCCCCCCHHCCCCC
>Mature Secondary Structure 
ADEAEQAGLRILGDVLSAAHSAGDLSCLSPDLLARIADTFHLQRVSLFQVHEAEGRGIA
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCEE
ATCVIDWRRPGLAFPAMTEGSHPPLTAAGGDPLLAQWAARRRRGETIIGRTRDLTGYLYG
EEEEEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHH
FFSHYGVVTFLTEPVMVHGRWWGHFCVDTPDAEHEWTAVERQAFKCIAAVLAGLLARSGT
HHHHCCCHHHHHCCEEEECEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EGLVSEAARRAMLDTSIDAVIVADEAGAIVEFNHAAEAIFGHTREGVIGRPMTETIIPAH
HHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHHCCHH
YIDRHRQGFMRHLATGENHIMRRLVEVEALRADGSVFPAELTVNEHRAGGRRLFSAFVRD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
ISDRITSRRALERLAFTDMHTGLSNRTGLLRLCTGRPTRPSGAVVLMLRDLGVVKTSFGD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCHHEECCCC
DWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPGAAAELAETLIGRLRSAIESG
CCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
GRRFYLRVGLGVVERPGDATYLLRDAEMAARDCRDGHLLHFAEHMRAQHQQRLELEMALR
CCEEEEEECCCEEECCCCCEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DVIQRRTSALSLHYQPVVSARTGGLVGFEALVRWYSETHGPVSPALFVPLAEAGGFAERL
HHHHHHHHHHEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHEEEEHHCCCHHHHH
GAWVIETAISACAGWNVRRRAHGLAPWHIAINLSATEVVAPDLIERVRQTMAFHGLPPQC
HHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCC
VCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGTGYSSLSYLQRLPMDVLKIDRSF
EEHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
VLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGALQILRQMGCDRAQGFLFGRAMP
HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEECCCC
GDVAGTLPETLAPTG
CCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370