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The map label for this gene is appB [H]

Identifier: 158424534

GI number: 158424534

Start: 3323069

End: 3324040

Strand: Reverse

Name: appB [H]

Synonym: AZC_2910

Alternate gene names: 158424534

Gene position: 3324040-3323069 (Counterclockwise)

Preceding gene: 158424535

Following gene: 158424533

Centisome position: 61.9

GC content: 64.92

Gene sequence:

>972_bases
ATGCTGGGCTTTGCCATCCAGAGGCTCATTCAGGCCGCCCTTGTGGTGCTGGTCATGTCGGCGCTGGTGTTCGCCGGCGT
GTTCGCCATCGGCAATCCCATCGATCTGCTCATCTCGCCCGAGGCGACGCAGGATATCCGCGCCGCCACCATCGCCAAAT
ACGGCTTCGACCTGCCGCTCTGGCAGCAGTATCTCCACTTCCTCGGGCGGGCCCTGCACGGGGATTTCGGCCAGTCCTTC
GTCTACAACATGCCGGTCGGACAGCTTATTCTCTCGCGCCTGCCCGCGACACTGGAACTGACGCTGGCCGCCGTCCTCGG
CGCGACGCTGCTCGGCGTGCCCCTTGGCATGTATGCGGGCTACCGGCCGAACAGCCCCGCCGCGAAGCTGCTCATGGCCG
CTTCCATCATCGGCTTTTCCGTTCCCACCTTCTGGGTCGGGCTGGTGCTGATCTTCGCTTTCGCGGTCCAACTCGGTTGG
CTGCCGGCGGGCGGGCGAGGCGCGACGGCCAGCCTGTTCGGCGTCGAATGGAGCTTTCTCACGCTGGACGGCCTCCAGCA
CATGTTGCTCCCGGCCATCAATCTCGCGCTGTTCAAGTTCGCGCTCATGATCCGCCTTGCCCGTTCCGGCACGCGGGAGG
TGATGCTGACCGACACGGTGAAATTCGCCCGCGCTGCCGGCCTCTCGGAACGCACCATCCTGCTGCGGCATGTGCTGCGG
CTGATCGCCATTCCCATCGTCACCGTCTTCGGGCTGGAGTTCGGCTCGACGCTCGCCTTCGCGGTGGTGACGGAAACCAT
CTTCTCCTGGCCGGGGCTGGGCAAGCTGATCATCGACTCCATCACCTCGCTCGATCGTCCGGTGATGGTCGCCTATCTCA
TGCTGGTGGCACTGTTCTTCATCGGCATCAATCTGGTGGTGGACCTCTCCTATGCCGCGCTCGACCCGCGCCTGCGGAAA
GGCCGCGCCTGA

Upstream 100 bases:

>100_bases
CGGCCTCTATCAGCGCCCCGATGTCGAAATGGAGGCGCTCTGGGCGGTGGCGGTGGAGGAGACCCGCGCGCTCCTCACGC
ATGGATGGCTCTGAGGCACC

Downstream 100 bases:

>100_bases
TGGATCGCGCCGCGCCGCTCGCCCGCTTCTTCGCCGAGTTCCGCGAGAACCGCTCGGCGGTGCTCGGCCTCGCCATCGTG
GTGACGCTGCTGGTGCTGGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLGFAIQRLIQAALVVLVMSALVFAGVFAIGNPIDLLISPEATQDIRAATIAKYGFDLPLWQQYLHFLGRALHGDFGQSF
VYNMPVGQLILSRLPATLELTLAAVLGATLLGVPLGMYAGYRPNSPAAKLLMAASIIGFSVPTFWVGLVLIFAFAVQLGW
LPAGGRGATASLFGVEWSFLTLDGLQHMLLPAINLALFKFALMIRLARSGTREVMLTDTVKFARAAGLSERTILLRHVLR
LIAIPIVTVFGLEFGSTLAFAVVTETIFSWPGLGKLIIDSITSLDRPVMVAYLMLVALFFIGINLVVDLSYAALDPRLRK
GRA

Sequences:

>Translated_323_residues
MLGFAIQRLIQAALVVLVMSALVFAGVFAIGNPIDLLISPEATQDIRAATIAKYGFDLPLWQQYLHFLGRALHGDFGQSF
VYNMPVGQLILSRLPATLELTLAAVLGATLLGVPLGMYAGYRPNSPAAKLLMAASIIGFSVPTFWVGLVLIFAFAVQLGW
LPAGGRGATASLFGVEWSFLTLDGLQHMLLPAINLALFKFALMIRLARSGTREVMLTDTVKFARAAGLSERTILLRHVLR
LIAIPIVTVFGLEFGSTLAFAVVTETIFSWPGLGKLIIDSITSLDRPVMVAYLMLVALFFIGINLVVDLSYAALDPRLRK
GRA
>Mature_323_residues
MLGFAIQRLIQAALVVLVMSALVFAGVFAIGNPIDLLISPEATQDIRAATIAKYGFDLPLWQQYLHFLGRALHGDFGQSF
VYNMPVGQLILSRLPATLELTLAAVLGATLLGVPLGMYAGYRPNSPAAKLLMAASIIGFSVPTFWVGLVLIFAFAVQLGW
LPAGGRGATASLFGVEWSFLTLDGLQHMLLPAINLALFKFALMIRLARSGTREVMLTDTVKFARAAGLSERTILLRHVLR
LIAIPIVTVFGLEFGSTLAFAVVTETIFSWPGLGKLIIDSITSLDRPVMVAYLMLVALFFIGINLVVDLSYAALDPRLRK
GRA

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=37.8125, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1789965, Length=345, Percent_Identity=35.9420289855072, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789888, Length=325, Percent_Identity=35.3846153846154, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=33.695652173913, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=31.2693498452012, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=35.7142857142857, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788504, Length=289, Percent_Identity=30.4498269896194, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34919; Mature: 34919

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGFAIQRLIQAALVVLVMSALVFAGVFAIGNPIDLLISPEATQDIRAATIAKYGFDLPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCHH
WQQYLHFLGRALHGDFGQSFVYNMPVGQLILSRLPATLELTLAAVLGATLLGVPLGMYAG
HHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
YRPNSPAAKLLMAASIIGFSVPTFWVGLVLIFAFAVQLGWLPAGGRGATASLFGVEWSFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEECCCHHH
TLDGLQHMLLPAINLALFKFALMIRLARSGTREVMLTDTVKFARAAGLSERTILLRHVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHH
LIAIPIVTVFGLEFGSTLAFAVVTETIFSWPGLGKLIIDSITSLDRPVMVAYLMLVALFF
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
IGINLVVDLSYAALDPRLRKGRA
HHHHHHHHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MLGFAIQRLIQAALVVLVMSALVFAGVFAIGNPIDLLISPEATQDIRAATIAKYGFDLPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCHH
WQQYLHFLGRALHGDFGQSFVYNMPVGQLILSRLPATLELTLAAVLGATLLGVPLGMYAG
HHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
YRPNSPAAKLLMAASIIGFSVPTFWVGLVLIFAFAVQLGWLPAGGRGATASLFGVEWSFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEECCCHHH
TLDGLQHMLLPAINLALFKFALMIRLARSGTREVMLTDTVKFARAAGLSERTILLRHVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHH
LIAIPIVTVFGLEFGSTLAFAVVTETIFSWPGLGKLIIDSITSLDRPVMVAYLMLVALFF
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
IGINLVVDLSYAALDPRLRKGRA
HHHHHHHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]