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The map label for this gene is csd [H]

Identifier: 158424487

GI number: 158424487

Start: 3260980

End: 3262338

Strand: Reverse

Name: csd [H]

Synonym: AZC_2863

Alternate gene names: 158424487

Gene position: 3262338-3260980 (Counterclockwise)

Preceding gene: 158424488

Following gene: 158424480

Centisome position: 60.75

GC content: 71.3

Gene sequence:

>1359_bases
GTGTGCCGCCGGGCAGAAGAGCCCTGGCGGCATGGAGGACCGGATGCCTTTCCTCGTCTCACTCCCCGCGGCAGACATCG
CTCTCGGCATCGACGGCGTGACGCGCATCCGATGGGTGGGCGAGACCGATTCGCGGGTTTCCGGCCTCGCTCGGGCGCGG
CTGCGATGATGGCGGGTCCCTTCACATCTTCCGAGATTGCGGAGCTGCGGGCGCAAACGCCCGCGACCGGCCATCGCATC
CATCTCAACCATGCCAGCACCAGCCTGATGCCGCGGGCGGTCACTGGCGTGATGACGGACTTCATCGCGCTGGAGCAGGC
CGTGGGCACCCACGCGGCCATGGAGGCGCACGCGCGAGACATTGAGGGCGTGCGCCATGCTGTGGCGGCGCTGCTCAACT
GCCCGCCGCGCAACATCGCGTTTGTGGAGACCGCCAGCCGGGGATGGGCGCTGGCGCTCGGCGCTTGCGTCTCCTCGGGC
CTGCGGCGCATCGCGCTCGCCCGCAGCGACTGGGGCGCGAACATCCTCAATGCCAGCGCCATGGCGACGGGGACCGCGCT
GGAGGTGTCGCTCGTGCCCATAGGCCCGCTCGGGCAATCGAGCCCGGCGGCGCTGGTGCAGGCGGGCGCTGGAGGCGCCG
TCGCCTTCTCCCTCGTGCCCACGTCCAGCGGTGTCGCTGCTGACGTTGAGACGATCGCGGAAGAGGCGCGCCGGCGCGAG
GCGCTGGTGATGATCGATGCTGCGCAGGCGGTGGGGCAGATACCCGTGGACGTTTCGGCGCTCGGCGCGGACGTGCTGGT
CTTTCCCGCCCGCAAATGGCTGCGCGGGCCGAAGGGCGCCGCCGTCCTGTTCGTGTCCGACCGCATCCTCGCGCAGGCGG
GGCCCCCGCTCCGCGATCTCGGCGGCGGGACGTGGAGTGGCGCGGACGATTTCCTGTGGCGGGACGATGCGCGCCGCTTC
GAGAGCTTCGAATTCAATCCCGCCGTGCGTCTGGGGCTCGGGGCTGCGGCCCGTCTCGCACGCGAGGTCGGCCCGGGGCG
GATCGCCGCCCGTATACGCGCATTGGTCGATCTGGCCTGTACGCGTCTGGCCGCCCTCGGCGCGCCGCTACCGATGGAGG
CGGGCGATCCCGCCGCGACGGGCATCATGACCTGGGCCGACCGGCGCAGGGATGTCGGCGCGCTCGTGGAGGCTCTGCGC
CAGCGGGGCATCTTTGCCGCCGGCATCGGCGAGAGCCAGGCGCGCCTTGCTCTGGAGGCGCGCGGCGGCCCGATCATTCG
GGCCTCGGTGCATTACTTCAATACGGAGGACGAGATCGAGGCTTTCGCGACGGGCTTCGCCGCCCTCTGGCACATCTGA

Upstream 100 bases:

>100_bases
CAACGCCGGGTGATGGCGCGGTCTCGAACCGCCGCCCGAACCGACGGGGAAGGAGGCGAAAGCTCTCCTCCGCCGGCCGT
GCATCTTCGGCTATCCTCAT

Downstream 100 bases:

>100_bases
GGTTCCAGAGGGTGGCGAACGGGTCAGAACCGGTAGGTGGCCCCCAGGATGGGCCCCTGCATCTGCACGTTGTACAGGAA
GTCGCCGGCCCGATAGTCCA

Product: selenocysteine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MCRRAEEPWRHGGPDAFPRLTPRGRHRSRHRRRDAHPMGGRDRFAGFRPRSGAAAMMAGPFTSSEIAELRAQTPATGHRI
HLNHASTSLMPRAVTGVMTDFIALEQAVGTHAAMEAHARDIEGVRHAVAALLNCPPRNIAFVETASRGWALALGACVSSG
LRRIALARSDWGANILNASAMATGTALEVSLVPIGPLGQSSPAALVQAGAGGAVAFSLVPTSSGVAADVETIAEEARRRE
ALVMIDAAQAVGQIPVDVSALGADVLVFPARKWLRGPKGAAVLFVSDRILAQAGPPLRDLGGGTWSGADDFLWRDDARRF
ESFEFNPAVRLGLGAAARLAREVGPGRIAARIRALVDLACTRLAALGAPLPMEAGDPAATGIMTWADRRRDVGALVEALR
QRGIFAAGIGESQARLALEARGGPIIRASVHYFNTEDEIEAFATGFAALWHI

Sequences:

>Translated_452_residues
MCRRAEEPWRHGGPDAFPRLTPRGRHRSRHRRRDAHPMGGRDRFAGFRPRSGAAAMMAGPFTSSEIAELRAQTPATGHRI
HLNHASTSLMPRAVTGVMTDFIALEQAVGTHAAMEAHARDIEGVRHAVAALLNCPPRNIAFVETASRGWALALGACVSSG
LRRIALARSDWGANILNASAMATGTALEVSLVPIGPLGQSSPAALVQAGAGGAVAFSLVPTSSGVAADVETIAEEARRRE
ALVMIDAAQAVGQIPVDVSALGADVLVFPARKWLRGPKGAAVLFVSDRILAQAGPPLRDLGGGTWSGADDFLWRDDARRF
ESFEFNPAVRLGLGAAARLAREVGPGRIAARIRALVDLACTRLAALGAPLPMEAGDPAATGIMTWADRRRDVGALVEALR
QRGIFAAGIGESQARLALEARGGPIIRASVHYFNTEDEIEAFATGFAALWHI
>Mature_452_residues
MCRRAEEPWRHGGPDAFPRLTPRGRHRSRHRRRDAHPMGGRDRFAGFRPRSGAAAMMAGPFTSSEIAELRAQTPATGHRI
HLNHASTSLMPRAVTGVMTDFIALEQAVGTHAAMEAHARDIEGVRHAVAALLNCPPRNIAFVETASRGWALALGACVSSG
LRRIALARSDWGANILNASAMATGTALEVSLVPIGPLGQSSPAALVQAGAGGAVAFSLVPTSSGVAADVETIAEEARRRE
ALVMIDAAQAVGQIPVDVSALGADVLVFPARKWLRGPKGAAVLFVSDRILAQAGPPLRDLGGGTWSGADDFLWRDDARRF
ESFEFNPAVRLGLGAAARLAREVGPGRIAARIRALVDLACTRLAALGAPLPMEAGDPAATGIMTWADRRRDVGALVEALR
QRGIFAAGIGESQARLALEARGGPIIRASVHYFNTEDEIEAFATGFAALWHI

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=354, Percent_Identity=26.5536723163842, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI48994898, Length=218, Percent_Identity=25.2293577981651, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 47759; Mature: 47759

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRRAEEPWRHGGPDAFPRLTPRGRHRSRHRRRDAHPMGGRDRFAGFRPRSGAAAMMAGP
CCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCEEEECC
FTSSEIAELRAQTPATGHRIHLNHASTSLMPRAVTGVMTDFIALEQAVGTHAAMEAHARD
CCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGVRHAVAALLNCPPRNIAFVETASRGWALALGACVSSGLRRIALARSDWGANILNASA
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHH
MATGTALEVSLVPIGPLGQSSPAALVQAGAGGAVAFSLVPTSSGVAADVETIAEEARRRE
HCCCCEEEEEEEECCCCCCCCCHHHEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCC
ALVMIDAAQAVGQIPVDVSALGADVLVFPARKWLRGPKGAAVLFVSDRILAQAGPPLRDL
EEEEEECHHHHCCCCCCHHHHCCCEEEECCHHHCCCCCCCEEEEEECHHHHHCCCCHHHC
GGGTWSGADDFLWRDDARRFESFEFNPAVRLGLGAAARLAREVGPGRIAARIRALVDLAC
CCCCCCCCCCCCCCHHHHHHHCCCCCCHHEECCHHHHHHHHHCCCHHHHHHHHHHHHHHH
TRLAALGAPLPMEAGDPAATGIMTWADRRRDVGALVEALRQRGIFAAGIGESQARLALEA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCCEEEEEE
RGGPIIRASVHYFNTEDEIEAFATGFAALWHI
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCRRAEEPWRHGGPDAFPRLTPRGRHRSRHRRRDAHPMGGRDRFAGFRPRSGAAAMMAGP
CCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCEEEECC
FTSSEIAELRAQTPATGHRIHLNHASTSLMPRAVTGVMTDFIALEQAVGTHAAMEAHARD
CCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGVRHAVAALLNCPPRNIAFVETASRGWALALGACVSSGLRRIALARSDWGANILNASA
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHH
MATGTALEVSLVPIGPLGQSSPAALVQAGAGGAVAFSLVPTSSGVAADVETIAEEARRRE
HCCCCEEEEEEEECCCCCCCCCHHHEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCC
ALVMIDAAQAVGQIPVDVSALGADVLVFPARKWLRGPKGAAVLFVSDRILAQAGPPLRDL
EEEEEECHHHHCCCCCCHHHHCCCEEEECCHHHCCCCCCCEEEEEECHHHHHCCCCHHHC
GGGTWSGADDFLWRDDARRFESFEFNPAVRLGLGAAARLAREVGPGRIAARIRALVDLAC
CCCCCCCCCCCCCCHHHHHHHCCCCCCHHEECCHHHHHHHHHCCCHHHHHHHHHHHHHHH
TRLAALGAPLPMEAGDPAATGIMTWADRRRDVGALVEALRQRGIFAAGIGESQARLALEA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCCEEEEEE
RGGPIIRASVHYFNTEDEIEAFATGFAALWHI
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]