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The map label for this gene is yfdE [H]

Identifier: 158424488

GI number: 158424488

Start: 3262426

End: 3263568

Strand: Reverse

Name: yfdE [H]

Synonym: AZC_2864

Alternate gene names: 158424488

Gene position: 3263568-3262426 (Counterclockwise)

Preceding gene: 158424489

Following gene: 158424487

Centisome position: 60.78

GC content: 70.95

Gene sequence:

>1143_bases
ATGACCGACGCCCCTTCCGATCTGCCGCTGGCCGGCGTGCGCGTGCTGGACCTCTCCCGCATCCTCGCCGGTCCCTGGTG
CGCCATGGTGCTGGGCGACCTCGGCGCGGATGTGGTGAAGGTGGAGCATCCCGAGCGGGGCGACGATACGCGCGACTGGG
GCCTGCGCACCGGGCGCACCACCACCTCCTATTTCGATGCGGTGAACCGCAACAAGCGCTCCGTCAGCATCGACCTTGCG
ACACCCGAGGGACTGGCGCAGGTGAAGGCGATGGCCCGCGACGCCGACATCGTGGTGCAGAATTTCAAGACCGGCGGGGC
GGACAAGCTCGGGCTCGGATACGAGGCGCTGGCGGCGGAGAACCCCCGTCTCATCTATTGCTCCATTTCCGGCTACGGCA
GCGAGGGGCCGGAGGCGAGCCGCCCCGGCTATGACCTTCTGGTCCAGGGCGAGGCGGGTCTCATGGCGCTGAACGGCGAG
GCCGAGCGCCCGCCGCTGAAGTTCGGCCTCGCGGCGGTGGACCTCTTCACCGGCCAGTATGCGGCGCAGGCCCTGCTGGC
CGCGCTCTACAAGCGCGAGCGCACCGGCAAGGGCAGCCGGGTGGAGCTGGCGCTGTTCGACAGCGGGCTGGCGCTCACCT
CCTATTATGGCCTTGAAGCGCTGGTGCAGGGCATCGATCCGCCGCGCTACGGCAATGCCCATCCCTCCATCGTGCCCTAC
GGCGTCTTCGACGCGCAGGATGGGGCGCTGGTCATCACGGTGGGCAACAACGCCCAGTTCCAGCGCTTCTGCACGAGCGT
GATCGGGCGGCCCGACCTCGCCGCCGATCCCCGTTTCGCCACCAATCTGGAGCGCTCCCGCAACCGAGCCGACCTGCTGC
CGGAGCTGCGGGCGGAACTCGCCCGCCGCACCCGCGCCGAACTGCTGGCGAGCCTGCGGGCCGCCGGCATCCCGGCCGGC
GAGGTGCTGGGTCTGCACGAGGCGCTGACCTCCGGCCGGGCACAGCGTGCGGGCATGGTGGTGCGGAGCGAGGAGGGAGC
CGGGGCGCCCCGCTATATTCTGGCGCCGCCCTATCGCTTCGACGGCGCCCGTCTGCCCGTCCGCGCCCTGCCGCCGGAAC
TGGAAGCGACCAACGCCGGGTGA

Upstream 100 bases:

>100_bases
ACCAGCCCAGAATTCCTCATGGAGGAGGTGCGTCCGCGCCTCATCGAGATGGTGCGTCGGCTGGATGGCGTGATGGGCGC
CTGACCCCGAGGACAGACGA

Downstream 100 bases:

>100_bases
TGGCGCGGTCTCGAACCGCCGCCCGAACCGACGGGGAAGGAGGCGAAAGCTCTCCTCCGCCGGCCGTGCATCTTCGGCTA
TCCTCATGTGTGCCGCCGGG

Product: acyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MTDAPSDLPLAGVRVLDLSRILAGPWCAMVLGDLGADVVKVEHPERGDDTRDWGLRTGRTTTSYFDAVNRNKRSVSIDLA
TPEGLAQVKAMARDADIVVQNFKTGGADKLGLGYEALAAENPRLIYCSISGYGSEGPEASRPGYDLLVQGEAGLMALNGE
AERPPLKFGLAAVDLFTGQYAAQALLAALYKRERTGKGSRVELALFDSGLALTSYYGLEALVQGIDPPRYGNAHPSIVPY
GVFDAQDGALVITVGNNAQFQRFCTSVIGRPDLAADPRFATNLERSRNRADLLPELRAELARRTRAELLASLRAAGIPAG
EVLGLHEALTSGRAQRAGMVVRSEEGAGAPRYILAPPYRFDGARLPVRALPPELEATNAG

Sequences:

>Translated_380_residues
MTDAPSDLPLAGVRVLDLSRILAGPWCAMVLGDLGADVVKVEHPERGDDTRDWGLRTGRTTTSYFDAVNRNKRSVSIDLA
TPEGLAQVKAMARDADIVVQNFKTGGADKLGLGYEALAAENPRLIYCSISGYGSEGPEASRPGYDLLVQGEAGLMALNGE
AERPPLKFGLAAVDLFTGQYAAQALLAALYKRERTGKGSRVELALFDSGLALTSYYGLEALVQGIDPPRYGNAHPSIVPY
GVFDAQDGALVITVGNNAQFQRFCTSVIGRPDLAADPRFATNLERSRNRADLLPELRAELARRTRAELLASLRAAGIPAG
EVLGLHEALTSGRAQRAGMVVRSEEGAGAPRYILAPPYRFDGARLPVRALPPELEATNAG
>Mature_379_residues
TDAPSDLPLAGVRVLDLSRILAGPWCAMVLGDLGADVVKVEHPERGDDTRDWGLRTGRTTTSYFDAVNRNKRSVSIDLAT
PEGLAQVKAMARDADIVVQNFKTGGADKLGLGYEALAAENPRLIYCSISGYGSEGPEASRPGYDLLVQGEAGLMALNGEA
ERPPLKFGLAAVDLFTGQYAAQALLAALYKRERTGKGSRVELALFDSGLALTSYYGLEALVQGIDPPRYGNAHPSIVPYG
VFDAQDGALVITVGNNAQFQRFCTSVIGRPDLAADPRFATNLERSRNRADLLPELRAELARRTRAELLASLRAAGIPAGE
VLGLHEALTSGRAQRAGMVVRSEEGAGAPRYILAPPYRFDGARLPVRALPPELEATNAG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=35.9249329758713, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI300863124, Length=321, Percent_Identity=38.9408099688474, Blast_Score=251, Evalue=9e-67,
Organism=Homo sapiens, GI13376042, Length=321, Percent_Identity=35.202492211838, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=31.6353887399464, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI266456254, Length=351, Percent_Identity=27.6353276353276, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI42794625, Length=351, Percent_Identity=27.6353276353276, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=30.5660377358491, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266458397, Length=256, Percent_Identity=31.25, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=37.8571428571429, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=37.8571428571429, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=343, Percent_Identity=33.8192419825073, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1788717, Length=385, Percent_Identity=29.0909090909091, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1786222, Length=327, Percent_Identity=27.217125382263, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=329, Percent_Identity=23.1003039513678, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=336, Percent_Identity=22.9166666666667, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648431, Length=375, Percent_Identity=40.5333333333333, Blast_Score=275, Evalue=5e-74,
Organism=Drosophila melanogaster, GI24585488, Length=210, Percent_Identity=28.0952380952381, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40529; Mature: 40398

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAPSDLPLAGVRVLDLSRILAGPWCAMVLGDLGADVVKVEHPERGDDTRDWGLRTGRT
CCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCHHCCCCCCCC
TTSYFDAVNRNKRSVSIDLATPEGLAQVKAMARDADIVVQNFKTGGADKLGLGYEALAAE
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHCCC
NPRLIYCSISGYGSEGPEASRPGYDLLVQGEAGLMALNGEAERPPLKFGLAAVDLFTGQY
CCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
AAQALLAALYKRERTGKGSRVELALFDSGLALTSYYGLEALVQGIDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
GVFDAQDGALVITVGNNAQFQRFCTSVIGRPDLAADPRFATNLERSRNRADLLPELRAEL
EEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
ARRTRAELLASLRAAGIPAGEVLGLHEALTSGRAQRAGMVVRSEEGAGAPRYILAPPYRF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCEEEECCCCCC
DGARLPVRALPPELEATNAG
CCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
TDAPSDLPLAGVRVLDLSRILAGPWCAMVLGDLGADVVKVEHPERGDDTRDWGLRTGRT
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCHHCCCCCCCC
TTSYFDAVNRNKRSVSIDLATPEGLAQVKAMARDADIVVQNFKTGGADKLGLGYEALAAE
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHCCC
NPRLIYCSISGYGSEGPEASRPGYDLLVQGEAGLMALNGEAERPPLKFGLAAVDLFTGQY
CCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
AAQALLAALYKRERTGKGSRVELALFDSGLALTSYYGLEALVQGIDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
GVFDAQDGALVITVGNNAQFQRFCTSVIGRPDLAADPRFATNLERSRNRADLLPELRAEL
EEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
ARRTRAELLASLRAAGIPAGEVLGLHEALTSGRAQRAGMVVRSEEGAGAPRYILAPPYRF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCEEEECCCCCC
DGARLPVRALPPELEATNAG
CCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]