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The map label for this gene is yciR [C]

Identifier: 158424458

GI number: 158424458

Start: 3225829

End: 3228057

Strand: Reverse

Name: yciR [C]

Synonym: AZC_2834

Alternate gene names: 158424458

Gene position: 3228057-3225829 (Counterclockwise)

Preceding gene: 158424459

Following gene: 158424457

Centisome position: 60.12

GC content: 68.95

Gene sequence:

>2229_bases
ATGACCGCCGGATTCCGGGGGGCGCCGGAACCCGCGTCGACGGAGGCTCCCATCACGTTTGCCCTGAAGCGCAGCGGGAA
ACCCTCGAACCACTGGCTCCTGACCGCCATGCTGGTCATCGCCGGCGGCTTGCTGGCCTTTCTCGTCTGGGGGCTGATGC
AATGGGATCTCGCCCGCGAACAGCGCGAGCGGGAGGCGGTCCGGGCCTTTCTCGACGCCCATACCCAGCACATGGTCCAG
GCGCTGAAGGCCGCGGCCTCCAACGCGGAAAATCCCGCCCCATCGGGAGGCGCGCTCAGCGAGGCGTGGTTCCAGCAGGC
CTTTGGCCGCCCGCTGAATGACACCTTCGGCTTCGAACAGAACTTCCTGCTCGATCAGGACGGACAGGTGCTCTACGCTT
CCTCGTCCGGCCAGAGCCTCTCGCCCGGTGCGCTGGAGGACATGAAGCCGGCGCTCAGGCAGATCGTGCAGCAGGCGCAG
GCCCAGAAGGAAGCTTCGGGCGTCGTCTCCCAAGGCAAGCTGTCGGGTCTTGCGGCTGTCCGCGCGGTCACTGTCAATCG
CGCCCCGGGCACCCGGACGGCGGGCGGCGCGGGGCCGGTCTATGCGGTGACGGTCGATCTCCTCAATCAGGACCTGTTCC
GGGAACTCGGCCAGAATTTCAATGCGGGCGCCTTCCATCTGCAGGAGGGGGCTGGCCCCACGACCACCACGCTGGCGCTG
CGCGACATGGTGGATGGCCGGCCGATCTCCATCACCTGGCCGGAGGATCGGCCGGGGCTCACCTTCCTGAAGCAGGTGGC
GCCGCCGGTGGCGCTGCTCTCCACCTTCCTTCTGGCCATGTGCGTCCTCATGCTGCGGGAAGCCCGCCGATCGGCGGCGG
CGCTGGCCGAGAGCGAGGCGCAGGCCACCATCCTCGCCTCGCAGGACACACTGACCGGTCTCGCCAACCGCGCGCAGGTG
CTGGCGCAGCTCCAGAACGTGCTGATGGACCTGCCGCCGGAGCGCGGCGTCGCGCTGATGTTCGTGGACCTCGACAGCTT
CAAGGACATCAACGACACGCTCGGCCATGCCGCCGGCGACACCCTGCTGCGCACGGTGGGCGATCGCCTGTCCGCCTGCG
CCGCGCCCTCGGGCCTTGCCGGACGGATTGGCGGCGACGAGTTCGTGCTGCTCATGCCGTTTGCGCATGCCCGGGAGGTG
GACGGCATCGTCGCAGCGGTGTTCCGCTCGCTGGAGCAGACCATCGCCATCGACGGTGCGGAACTCGGCGTCAGTGCCTC
CATCGGCATCGCGCTCGCGCCCCATGACGCCACCTATGGCGACGACCTCATGCGGCGGGCCGACATGGCGCTCTACCGCG
CCAAGCATATGGGACGCAGCGCGGCGGTGCGCTTCCAGCCGCATTTCGAGCGCGAGCTCCAGCACCGCCTGACGCTGGAG
ACCGAACTGGCGGAGGCGCTGGAGCGCGGACAGTTCTCCATGGTCTACCAGCCGCAGGTGGATCTTGAGACCCGCCGCAT
CGTGGGTCTGGAAGCCCTGGTGCGCTGGAACCATCCCCAGCGCGGGCGGCTGCTGCCGGGCGAGTTCCTGTGGGTCGCGG
AAGGCACCCGCCTCATCACCCGCATCGATGCCTGGGTGCTGCGCCATGCCTGCCTGGAGGCCAAGGCGTTCGGTGGCATT
TCGCTGGCGGTGAACATGTCGCCGGTGAACCTGCGCTACCCCGGCATGGCCGAGCGCATTCTGGACGTGCTGCGGGAGAC
CGGCTTTCCGCCGGAGCGGCTGGAGATCGAGCTGACCGAAAGCGCCATGCTGGACAGCGGCCGGGATGTGAAGGAGACGC
TGGATCGTCTGCGGGCCCACGGCGTGCGCCTCGCACTCGATGACTTCGGCACCGGCCATGCCTCGCTGCTGCACGTGCGC
AACTTTCCCGTCACCAAGATCAAGATCGACCGCTCGTTCATCGCCAATCTCGGGGTGGAGCGTGATGCGGCCTCCATCGT
CGAGCATGTGATCCGGCTCGGCCGCTCGCTCGGCATCACGCTCACCGCCGAGGGCGTGGACAATCTCGAGCAGGTGCGCT
TCCTGCGGGCCTTCGGCGCCCAGCAGGCGCAGGGTTTCCTCTTCTCCGCGCCGCTGCCGGCAGCCGCCGCCGCCGATCTC
GTGGCGCAGAACCGGGAGCAGTTCCAGACCACGCGCCGCCCGCCCGGCCGTTCCGTCCCGCCCGTCTGA

Upstream 100 bases:

>100_bases
GGCGCGCGTTAAAATTAGGGTGTAATCCACCAGCGCACGTGATTTCTTCGCACATGCGACACAGATCAGCTTGCGGGTTG
CAGGCGAGGGTCCCTAGAAC

Downstream 100 bases:

>100_bases
GGCGGGTCCGCCGCGTCTCCCCGCCGCTTTCCCGCCCGCCGCTTCCTGTTCTACGATCCCCCAGCAGCCGGACCGCAGAA
GTCCGCGCCCATGTCGGACG

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 742; Mature: 741

Protein sequence:

>742_residues
MTAGFRGAPEPASTEAPITFALKRSGKPSNHWLLTAMLVIAGGLLAFLVWGLMQWDLAREQREREAVRAFLDAHTQHMVQ
ALKAAASNAENPAPSGGALSEAWFQQAFGRPLNDTFGFEQNFLLDQDGQVLYASSSGQSLSPGALEDMKPALRQIVQQAQ
AQKEASGVVSQGKLSGLAAVRAVTVNRAPGTRTAGGAGPVYAVTVDLLNQDLFRELGQNFNAGAFHLQEGAGPTTTTLAL
RDMVDGRPISITWPEDRPGLTFLKQVAPPVALLSTFLLAMCVLMLREARRSAAALAESEAQATILASQDTLTGLANRAQV
LAQLQNVLMDLPPERGVALMFVDLDSFKDINDTLGHAAGDTLLRTVGDRLSACAAPSGLAGRIGGDEFVLLMPFAHAREV
DGIVAAVFRSLEQTIAIDGAELGVSASIGIALAPHDATYGDDLMRRADMALYRAKHMGRSAAVRFQPHFERELQHRLTLE
TELAEALERGQFSMVYQPQVDLETRRIVGLEALVRWNHPQRGRLLPGEFLWVAEGTRLITRIDAWVLRHACLEAKAFGGI
SLAVNMSPVNLRYPGMAERILDVLRETGFPPERLEIELTESAMLDSGRDVKETLDRLRAHGVRLALDDFGTGHASLLHVR
NFPVTKIKIDRSFIANLGVERDAASIVEHVIRLGRSLGITLTAEGVDNLEQVRFLRAFGAQQAQGFLFSAPLPAAAAADL
VAQNREQFQTTRRPPGRSVPPV

Sequences:

>Translated_742_residues
MTAGFRGAPEPASTEAPITFALKRSGKPSNHWLLTAMLVIAGGLLAFLVWGLMQWDLAREQREREAVRAFLDAHTQHMVQ
ALKAAASNAENPAPSGGALSEAWFQQAFGRPLNDTFGFEQNFLLDQDGQVLYASSSGQSLSPGALEDMKPALRQIVQQAQ
AQKEASGVVSQGKLSGLAAVRAVTVNRAPGTRTAGGAGPVYAVTVDLLNQDLFRELGQNFNAGAFHLQEGAGPTTTTLAL
RDMVDGRPISITWPEDRPGLTFLKQVAPPVALLSTFLLAMCVLMLREARRSAAALAESEAQATILASQDTLTGLANRAQV
LAQLQNVLMDLPPERGVALMFVDLDSFKDINDTLGHAAGDTLLRTVGDRLSACAAPSGLAGRIGGDEFVLLMPFAHAREV
DGIVAAVFRSLEQTIAIDGAELGVSASIGIALAPHDATYGDDLMRRADMALYRAKHMGRSAAVRFQPHFERELQHRLTLE
TELAEALERGQFSMVYQPQVDLETRRIVGLEALVRWNHPQRGRLLPGEFLWVAEGTRLITRIDAWVLRHACLEAKAFGGI
SLAVNMSPVNLRYPGMAERILDVLRETGFPPERLEIELTESAMLDSGRDVKETLDRLRAHGVRLALDDFGTGHASLLHVR
NFPVTKIKIDRSFIANLGVERDAASIVEHVIRLGRSLGITLTAEGVDNLEQVRFLRAFGAQQAQGFLFSAPLPAAAAADL
VAQNREQFQTTRRPPGRSVPPV
>Mature_741_residues
TAGFRGAPEPASTEAPITFALKRSGKPSNHWLLTAMLVIAGGLLAFLVWGLMQWDLAREQREREAVRAFLDAHTQHMVQA
LKAAASNAENPAPSGGALSEAWFQQAFGRPLNDTFGFEQNFLLDQDGQVLYASSSGQSLSPGALEDMKPALRQIVQQAQA
QKEASGVVSQGKLSGLAAVRAVTVNRAPGTRTAGGAGPVYAVTVDLLNQDLFRELGQNFNAGAFHLQEGAGPTTTTLALR
DMVDGRPISITWPEDRPGLTFLKQVAPPVALLSTFLLAMCVLMLREARRSAAALAESEAQATILASQDTLTGLANRAQVL
AQLQNVLMDLPPERGVALMFVDLDSFKDINDTLGHAAGDTLLRTVGDRLSACAAPSGLAGRIGGDEFVLLMPFAHAREVD
GIVAAVFRSLEQTIAIDGAELGVSASIGIALAPHDATYGDDLMRRADMALYRAKHMGRSAAVRFQPHFERELQHRLTLET
ELAEALERGQFSMVYQPQVDLETRRIVGLEALVRWNHPQRGRLLPGEFLWVAEGTRLITRIDAWVLRHACLEAKAFGGIS
LAVNMSPVNLRYPGMAERILDVLRETGFPPERLEIELTESAMLDSGRDVKETLDRLRAHGVRLALDDFGTGHASLLHVRN
FPVTKIKIDRSFIANLGVERDAASIVEHVIRLGRSLGITLTAEGVDNLEQVRFLRAFGAQQAQGFLFSAPLPAAAAADLV
AQNREQFQTTRRPPGRSVPPV

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=417, Percent_Identity=32.6139088729017, Blast_Score=225, Evalue=1e-59,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=31.7972350230415, Blast_Score=206, Evalue=4e-54,
Organism=Escherichia coli, GI226510982, Length=415, Percent_Identity=31.3253012048193, Blast_Score=176, Evalue=5e-45,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=31.1475409836066, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=33.8912133891213, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=32.0158102766798, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=30.7377049180328, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=30.4526748971193, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=27.710843373494, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=28.5106382978723, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI1788381, Length=347, Percent_Identity=30.2593659942363, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788849, Length=268, Percent_Identity=29.1044776119403, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87081881, Length=208, Percent_Identity=32.2115384615385, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787410, Length=215, Percent_Identity=27.4418604651163, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87082096, Length=202, Percent_Identity=27.2277227722772, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1786584, Length=205, Percent_Identity=29.2682926829268, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=183, Percent_Identity=32.7868852459016, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=28.4313725490196, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=30.0613496932515, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI145693134, Length=126, Percent_Identity=34.9206349206349, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=190, Percent_Identity=30.5263157894737, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=28.9156626506024, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 80378; Mature: 80247

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGFRGAPEPASTEAPITFALKRSGKPSNHWLLTAMLVIAGGLLAFLVWGLMQWDLARE
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREREAVRAFLDAHTQHMVQALKAAASNAENPAPSGGALSEAWFQQAFGRPLNDTFGFEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
NFLLDQDGQVLYASSSGQSLSPGALEDMKPALRQIVQQAQAQKEASGVVSQGKLSGLAAV
CCEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RAVTVNRAPGTRTAGGAGPVYAVTVDLLNQDLFRELGQNFNAGAFHLQEGAGPTTTTLAL
HEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
RDMVDGRPISITWPEDRPGLTFLKQVAPPVALLSTFLLAMCVLMLREARRSAAALAESEA
HHHCCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QATILASQDTLTGLANRAQVLAQLQNVLMDLPPERGVALMFVDLDSFKDINDTLGHAAGD
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
TLLRTVGDRLSACAAPSGLAGRIGGDEFVLLMPFAHAREVDGIVAAVFRSLEQTIAIDGA
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCH
ELGVSASIGIALAPHDATYGDDLMRRADMALYRAKHMGRSAAVRFQPHFERELQHRLTLE
HCCCEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
TELAEALERGQFSMVYQPQVDLETRRIVGLEALVRWNHPQRGRLLPGEFLWVAEGTRLIT
HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHH
RIDAWVLRHACLEAKAFGGISLAVNMSPVNLRYPGMAERILDVLRETGFPPERLEIELTE
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEECH
SAMLDSGRDVKETLDRLRAHGVRLALDDFGTGHASLLHVRNFPVTKIKIDRSFIANLGVE
HHHHCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCEEEEECHHHHHHCCCC
RDAASIVEHVIRLGRSLGITLTAEGVDNLEQVRFLRAFGAQQAQGFLFSAPLPAAAAADL
CHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHCCEEEECCCCHHHHHHH
VAQNREQFQTTRRPPGRSVPPV
HHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TAGFRGAPEPASTEAPITFALKRSGKPSNHWLLTAMLVIAGGLLAFLVWGLMQWDLARE
CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREREAVRAFLDAHTQHMVQALKAAASNAENPAPSGGALSEAWFQQAFGRPLNDTFGFEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
NFLLDQDGQVLYASSSGQSLSPGALEDMKPALRQIVQQAQAQKEASGVVSQGKLSGLAAV
CCEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RAVTVNRAPGTRTAGGAGPVYAVTVDLLNQDLFRELGQNFNAGAFHLQEGAGPTTTTLAL
HEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
RDMVDGRPISITWPEDRPGLTFLKQVAPPVALLSTFLLAMCVLMLREARRSAAALAESEA
HHHCCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QATILASQDTLTGLANRAQVLAQLQNVLMDLPPERGVALMFVDLDSFKDINDTLGHAAGD
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
TLLRTVGDRLSACAAPSGLAGRIGGDEFVLLMPFAHAREVDGIVAAVFRSLEQTIAIDGA
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCH
ELGVSASIGIALAPHDATYGDDLMRRADMALYRAKHMGRSAAVRFQPHFERELQHRLTLE
HCCCEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
TELAEALERGQFSMVYQPQVDLETRRIVGLEALVRWNHPQRGRLLPGEFLWVAEGTRLIT
HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHH
RIDAWVLRHACLEAKAFGGISLAVNMSPVNLRYPGMAERILDVLRETGFPPERLEIELTE
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEECH
SAMLDSGRDVKETLDRLRAHGVRLALDDFGTGHASLLHVRNFPVTKIKIDRSFIANLGVE
HHHHCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCEEEEECHHHHHHCCCC
RDAASIVEHVIRLGRSLGITLTAEGVDNLEQVRFLRAFGAQQAQGFLFSAPLPAAAAADL
CHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHCCEEEECCCCHHHHHHH
VAQNREQFQTTRRPPGRSVPPV
HHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]